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Search of human proteins with 13376816
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376816 CXXC finger 4 [Homo sapiens]
(198 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376816 CXXC finger 4 [Homo sapiens] 413 e-116
gi|158261990 CXXC finger 5 [Homo sapiens] 140 5e-34
gi|156139122 CXXC finger 6 [Homo sapiens] 86 2e-17
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 44 7e-05
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 41 8e-04
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 38 0.006
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 38 0.006
gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo ... 37 0.011
gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1 [Ho... 37 0.011
gi|21464117 methyl-CpG binding domain protein 1 isoform 1 [Homo ... 37 0.011
gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... 36 0.019
gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo... 36 0.019
gi|13489073 egl nine homolog 1 [Homo sapiens] 36 0.024
gi|157168349 F-box and leucine-rich repeat protein 19 [Homo sapi... 35 0.054
gi|170763515 DMRT-like family A1 [Homo sapiens] 34 0.071
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 34 0.093
gi|47933389 solute carrier family 2, member 9 protein isoform 2 ... 33 0.12
gi|47933387 solute carrier family 2, member 9 protein isoform 1 ... 33 0.12
gi|47716512 mex-3 homolog B [Homo sapiens] 33 0.16
gi|4557595 forkhead box F2 [Homo sapiens] 33 0.21
gi|4557733 latent transforming growth factor beta binding protei... 32 0.35
gi|13376611 zinc finger protein 703 [Homo sapiens] 32 0.35
gi|7710143 methyl-CpG binding domain protein 1 isoform 4 [Homo s... 32 0.35
gi|156105673 methyl-CpG binding domain protein 1 isoform 3 [Homo... 32 0.35
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 32 0.46
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 32 0.46
gi|44771211 mediator complex subunit 13-like [Homo sapiens] 32 0.46
gi|113722116 plexin A2 [Homo sapiens] 31 0.60
gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens] 31 0.79
gi|126352608 elastin isoform e precursor [Homo sapiens] 31 0.79
>gi|13376816 CXXC finger 4 [Homo sapiens]
Length = 198
Score = 413 bits (1062), Expect = e-116
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MHHRNDSQRLGKAGCPPEPSLQMANTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNL 60
MHHRNDSQRLGKAGCPPEPSLQMANTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNL
Sbjct: 1 MHHRNDSQRLGKAGCPPEPSLQMANTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNL 60
Query: 61 PERVGTFSAIPALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSS 120
PERVGTFSAIPALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSS
Sbjct: 61 PERVGTFSAIPALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSS 120
Query: 121 SSSGGAGGANPAKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPG 180
SSSGGAGGANPAKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPG
Sbjct: 121 SSSGGAGGANPAKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPG 180
Query: 181 TSLERTPVPSAEAFRWFF 198
TSLERTPVPSAEAFRWFF
Sbjct: 181 TSLERTPVPSAEAFRWFF 198
>gi|158261990 CXXC finger 5 [Homo sapiens]
Length = 322
Score = 140 bits (354), Expect = 5e-34
Identities = 78/173 (45%), Positives = 100/173 (57%), Gaps = 19/173 (10%)
Query: 25 NTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIV 84
+T L + EH PL M++ G + E + E + S P LG + PG+ +
Sbjct: 168 STEMLKRVVQEHL-PL----MSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFI 222
Query: 85 MTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVCVP 144
MT A + +SA +A LA+ P +S+ SSG KKKRKRCG+C P
Sbjct: 223 MTP------AGVFLAESALHMAGLAEYPMQGELASAISSG--------KKKRKRCGMCAP 268
Query: 145 CKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSAEAFRWF 197
C+R INC CSSCRNRKTGHQICKFRKCEELKKKP +LE+ +P+ AFRWF
Sbjct: 269 CRRRINCEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPTGAAFRWF 321
>gi|156139122 CXXC finger 6 [Homo sapiens]
Length = 2136
Score = 85.9 bits (211), Expect = 2e-17
Identities = 40/62 (64%), Positives = 45/62 (72%)
Query: 118 SSSSSSGGAGGANPAKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKK 177
S+SSSS KKKRKRCGVC PC++ NCG C+ C+NRK HQICK RKCEELKK
Sbjct: 570 STSSSSYTTLLPTLEKKKRKRCGVCEPCQQKTNCGECTYCKNRKNSHQICKKRKCEELKK 629
Query: 178 KP 179
KP
Sbjct: 630 KP 631
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 44.3 bits (103), Expect = 7e-05
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 131 PAKKKRK--RCGVCVPCKRLINCGVCSSCRN------RKTGHQICKFRKCEELKKKP 179
P KK R+ RCG C C+ +CGVC++C + R Q CK RKC+ L+ P
Sbjct: 1145 PVKKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMP 1201
Score = 30.8 bits (68), Expect = 0.79
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 74 GGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGA 129
GG PP + A + A +S A A+ A SSSSSSSS +G A
Sbjct: 49 GGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPA 104
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 40.8 bits (94), Expect = 8e-04
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Query: 133 KKKRKRCGVCVPCKRLINCGVCSSCRNR------KTGHQICKFRKCEELK-------KKP 179
K + RCG C C R+ +CG C +C ++ T Q C +RKC++++ K
Sbjct: 960 KMRMARCGHCRGCLRVQDCGSCVNCLDKPKFGGPNTKKQCCVYRKCDKIEARKMERLAKK 1019
Query: 180 GTSLERTPVP 189
G ++ +T +P
Sbjct: 1020 GRTIVKTLLP 1029
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 37.7 bits (86), Expect = 0.006
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 133 KKKRKRCGVCVPCKRLINCGVCSSCRNRKTG------HQICKFRKCE 173
K+ + CG C C+R +CG C CR+ K Q C+ R+C+
Sbjct: 163 KRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQ 209
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 37.7 bits (86), Expect = 0.006
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 133 KKKRKRCGVCVPCKRLINCGVCSSCRNRKTG------HQICKFRKCE 173
K+ + CG C C+R +CG C CR+ K Q C+ R+C+
Sbjct: 163 KRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQ 209
>gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo
sapiens]
Length = 586
Score = 37.0 bits (84), Expect = 0.011
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 133 KKKRKRCGVCVPCKRLINCGVCSSCRNR-KTG-----HQICKFRKCEELKKK 178
+++ ++CG C C R ++CG C C ++ K G Q C++R+C + K
Sbjct: 309 RRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMK 360
Score = 32.0 bits (71), Expect = 0.35
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 135 KRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICK--FRKCE 173
KR CG C C+ +CG CS+C + H + F KCE
Sbjct: 172 KRVGCGECAACQVTEDCGACSTCL-LQLPHDVASGLFCKCE 211
>gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1 [Homo
sapiens]
Length = 556
Score = 37.0 bits (84), Expect = 0.011
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 133 KKKRKRCGVCVPCKRLINCGVCSSCRNR-KTG-----HQICKFRKCEELKKK 178
+++ ++CG C C R ++CG C C ++ K G Q C++R+C + K
Sbjct: 283 RRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMK 334
Score = 27.3 bits (59), Expect = 8.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 135 KRKRCGVCVPCKRLINCGVCSSC 157
K + CGVC C+ +CG C C
Sbjct: 172 KSRGCGVCRGCQTQEDCGHCPIC 194
>gi|21464117 methyl-CpG binding domain protein 1 isoform 1 [Homo
sapiens]
Length = 605
Score = 37.0 bits (84), Expect = 0.011
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 133 KKKRKRCGVCVPCKRLINCGVCSSCRNR-KTG-----HQICKFRKCEELKKK 178
+++ ++CG C C R ++CG C C ++ K G Q C++R+C + K
Sbjct: 332 RRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMK 383
Score = 32.0 bits (71), Expect = 0.35
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 135 KRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICK--FRKCE 173
KR CG C C+ +CG CS+C + H + F KCE
Sbjct: 172 KRVGCGECAACQVTEDCGACSTCL-LQLPHDVASGLFCKCE 211
>gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Homo
sapiens]
Length = 1632
Score = 36.2 bits (82), Expect = 0.019
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 135 KRKRCGVCVPCKRLINCGVCSSCRNR-KTG-----HQICKFRKCEELKKK 178
KR+RCGVC C++ CG C +C++ K G Q C+ R+C + K
Sbjct: 665 KRRRCGVCEVCQQ-PECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMK 713
>gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo
sapiens]
Length = 1616
Score = 36.2 bits (82), Expect = 0.019
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 135 KRKRCGVCVPCKRLINCGVCSSCRNR-KTG-----HQICKFRKCEELKKK 178
KR+RCGVC C++ CG C +C++ K G Q C+ R+C + K
Sbjct: 649 KRRRCGVCEVCQQ-PECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMK 697
>gi|13489073 egl nine homolog 1 [Homo sapiens]
Length = 426
Score = 35.8 bits (81), Expect = 0.024
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 120 SSSSGGAGGANPAKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKK 177
++ SGG GG +P+++ R+ C +C + L+ C C ++ CK + ++ KK
Sbjct: 2 ANDSGGPGGPSPSERDRQYCELCGKMENLLRCSRC------RSSFYCCKEHQRQDWKK 53
>gi|157168349 F-box and leucine-rich repeat protein 19 [Homo
sapiens]
Length = 694
Score = 34.7 bits (78), Expect = 0.054
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 119 SSSSSGGAGGANPAKKKRKRCGVCVPCKRLINCGVCSSCRNRK------TGHQICKFRKC 172
SSSS G G A+++R RC C C R CG C CR+ K Q C R+C
Sbjct: 22 SSSSRGPGAG---ARRRRTRCRRCRACVR-TECGDCHFCRDMKKFGGPGRMKQSCLLRQC 77
>gi|170763515 DMRT-like family A1 [Homo sapiens]
Length = 504
Score = 34.3 bits (77), Expect = 0.071
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 69 AIPALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGG 128
A+P G+ +PP + +L AAA+AA +A + CP S + G G
Sbjct: 34 ALPVPSGMQVPPAFLRPPSLFLRAAAAAAAAAAA--TSGSGGCPPAPGLESGVGAVGCGY 91
Query: 129 ANPAKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKC 172
K C R N GV S+ + K + C++R C
Sbjct: 92 PRTPK-----------CARCRNHGVVSALKGHK---RFCRWRDC 121
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 33.9 bits (76), Expect = 0.093
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 114 NHSSSSSSSSGGAGGANPAKKKRKR-CGVC---------VPCKRLINCGVCSS--CRNRK 161
N ++S SSS+GG+ ++P + +RK C +C VPC + C C++ C R
Sbjct: 582 NGTNSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCGHNLFCMECANKICEKRT 641
Query: 162 TGHQICK 168
+C+
Sbjct: 642 PSCPVCQ 648
>gi|47933389 solute carrier family 2, member 9 protein isoform 2
[Homo sapiens]
Length = 511
Score = 33.5 bits (75), Expect = 0.12
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 28 FLSTLSPEHCRPLAGECMNKLKC-GAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMT 86
+LS +SP+ R G+ C G +++ LPE +G S P L G+ + P V+ +
Sbjct: 159 YLSEISPKEIRGSLGQVTAIFICIGVFTGQLLGLPELLGKESTWPYLFGVIVVPAVVQLL 218
Query: 87 AL 88
+L
Sbjct: 219 SL 220
>gi|47933387 solute carrier family 2, member 9 protein isoform 1
[Homo sapiens]
Length = 540
Score = 33.5 bits (75), Expect = 0.12
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 28 FLSTLSPEHCRPLAGECMNKLKC-GAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMT 86
+LS +SP+ R G+ C G +++ LPE +G S P L G+ + P V+ +
Sbjct: 188 YLSEISPKEIRGSLGQVTAIFICIGVFTGQLLGLPELLGKESTWPYLFGVIVVPAVVQLL 247
Query: 87 AL 88
+L
Sbjct: 248 SL 249
>gi|47716512 mex-3 homolog B [Homo sapiens]
Length = 569
Score = 33.1 bits (74), Expect = 0.16
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 109 ADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVCVPCK---RLINCG---VCSSCRNR 160
+D + SSSSSSSS + + +K + C VC + L+ CG C C NR
Sbjct: 488 SDTSGSSSSSSSSSSSSSSSSGLRRKGSRDCSVCFESEVIAALVPCGHNLFCMECANR 545
>gi|4557595 forkhead box F2 [Homo sapiens]
Length = 444
Score = 32.7 bits (73), Expect = 0.21
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 20/110 (18%)
Query: 80 PGVIVMTALHSPAAASAAV-----TDSAFQIANLADCPQNHSSSSSSSS---------GG 125
PG + + P AA+AA T S+ ++ A C + SSS+S+S+ GG
Sbjct: 20 PGALQAALMSPPPAAAAAAAAAPETTSSSSSSSSASCASSSSSSNSASAPSAACKSAGGG 79
Query: 126 AGGANPAKKKRKRCGVCVPCK------RLINCGVCSSCRNRKTGHQICKF 169
GA K+ G+ P K LI + SS R T +I +F
Sbjct: 80 GAGAGSGGAKKASSGLRRPEKPPYSYIALIVMAIQSSPSKRLTLSEIYQF 129
>gi|4557733 latent transforming growth factor beta binding protein 2
[Homo sapiens]
Length = 1821
Score = 32.0 bits (71), Expect = 0.35
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 145 CKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSAEAFR 195
C R + G C+ ++ QIC C + K G+ E+ P+P EAFR
Sbjct: 674 CYRSLGPGTCTLPLAQRITKQICC---CSRVGKAWGSECEKCPLPGTEAFR 721
>gi|13376611 zinc finger protein 703 [Homo sapiens]
Length = 590
Score = 32.0 bits (71), Expect = 0.35
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Query: 10 LGKAGCPPEPSLQMANTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNLPE---RVGT 66
L +A P L+M + + L PE+ +PL+ ++ ++ A ++ + L + ++G
Sbjct: 42 LRQANRLPIRVLKMLSAHTGHLLHPEYLQPLSSTPVSPIELDAKKSPLALLAQTCSQIGK 101
Query: 67 FSAIPALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGA 126
P+ S+ + A P ++ +A + L D P SS S G+
Sbjct: 102 PDPPPSSKLNSVAAAANGLGAEKDPGRSAPGAASAAAALKQLGDSPAEDKSSFKPYSKGS 161
Query: 127 GGANPAK 133
GG + K
Sbjct: 162 GGGDSRK 168
>gi|7710143 methyl-CpG binding domain protein 1 isoform 4 [Homo
sapiens]
Length = 503
Score = 32.0 bits (71), Expect = 0.35
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 135 KRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICK--FRKCE 173
KR CG C C+ +CG CS+C + H + F KCE
Sbjct: 172 KRVGCGECAACQVTEDCGACSTCL-LQLPHDVASGLFCKCE 211
>gi|156105673 methyl-CpG binding domain protein 1 isoform 3 [Homo
sapiens]
Length = 549
Score = 32.0 bits (71), Expect = 0.35
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 135 KRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICK--FRKCE 173
KR CG C C+ +CG CS+C + H + F KCE
Sbjct: 172 KRVGCGECAACQVTEDCGACSTCL-LQLPHDVASGLFCKCE 211
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 31.6 bits (70), Expect = 0.46
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 49 KCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANL 108
K GAA A P+ TF P L LPP T AAA+AAV A + L
Sbjct: 474 KDGAASA-----PQPPPTFPPGPYL----LPPDPPT-TDSEKAAAAAAAVVYGAVPVPLL 523
Query: 109 ADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVC 142
P + +S +GG+G + P K CG+C
Sbjct: 524 GAHPLLLGGAGTSGAGGSGASVPG--KTFCCGIC 555
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 31.6 bits (70), Expect = 0.46
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 49 KCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANL 108
K GAA A P+ TF P L LPP T AAA+AAV A + L
Sbjct: 474 KDGAASA-----PQPPPTFPPGPYL----LPPDPPT-TDSEKAAAAAAAVVYGAVPVPLL 523
Query: 109 ADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVC 142
P + +S +GG+G + P K CG+C
Sbjct: 524 GAHPLLLGGAGTSGAGGSGASVPG--KTFCCGIC 555
>gi|44771211 mediator complex subunit 13-like [Homo sapiens]
Length = 2210
Score = 31.6 bits (70), Expect = 0.46
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 68 SAIPALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCP---QNHSSSSSSSSG 124
SA P G P T +PAA+S+A S +++ A P Q ++SSS SG
Sbjct: 1553 SAAPPAGSAFNPTSNSSST---NPAASSSASGSSVPPVSSSASAPGISQISTTSSSGFSG 1609
Query: 125 GAGGANPA 132
GG NP+
Sbjct: 1610 SVGGQNPS 1617
>gi|113722116 plexin A2 [Homo sapiens]
Length = 1894
Score = 31.2 bits (69), Expect = 0.60
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 135 KRKRCGVCVPCKRLINCGVCSSCRNRKTGHQIC 167
+R+ CG+C+ R CG CS R R T HQ C
Sbjct: 807 QRESCGLCLKADRKFECGWCSGER-RCTLHQHC 838
>gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens]
Length = 1162
Score = 30.8 bits (68), Expect = 0.79
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 132 AKKKRKRCGVCVPCKRLINCGVCSSCRNRK------TGHQICKFRKC 172
A+++R RC C C + CGVC CR+ K Q C R+C
Sbjct: 564 ARRRRVRCRKCKACVQG-ECGVCHYCRDMKKFGGPGRMKQSCVLRQC 609
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 30.8 bits (68), Expect = 0.79
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 65 GTFSAIPALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADC-PQNHSSSSSSSS 123
G + ALGG+ +P GV+ + AAA AA + F + A
Sbjct: 582 GVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGV 641
Query: 124 GGAGGANPA 132
GG GG PA
Sbjct: 642 GGLGGIPPA 650
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,337,789
Number of Sequences: 37866
Number of extensions: 439532
Number of successful extensions: 2556
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 2365
Number of HSP's gapped (non-prelim): 218
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.