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Search of human proteins with 5174555
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5174555 microfibrillar-associated protein 3 isoform 1 [Homo
sapiens]
(362 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5174555 microfibrillar-associated protein 3 isoform 1 [Homo s... 720 0.0
gi|205277369 microfibrillar-associated protein 3 isoform 2 [Homo... 429 e-120
gi|153792329 microfibrillar-associated protein 3-like isoform 1 ... 303 2e-82
gi|57222338 microfibrillar-associated protein 3-like isoform 2 [... 279 3e-75
gi|153791507 leucine rich repeat neuronal 3 [Homo sapiens] 42 7e-04
gi|153792651 leucine rich repeat neuronal 3 [Homo sapiens] 42 7e-04
gi|153792227 leucine rich repeat neuronal 3 [Homo sapiens] 42 7e-04
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens] 42 0.001
gi|118572606 hemicentin 1 [Homo sapiens] 40 0.003
gi|157168355 CD22 molecule [Homo sapiens] 39 0.009
gi|57222563 colonic and hepatic tumor over-expressed protein iso... 39 0.009
gi|57164942 colonic and hepatic tumor over-expressed protein iso... 39 0.009
gi|51317373 netrin-G1 ligand [Homo sapiens] 39 0.009
gi|7657361 contactin 6 [Homo sapiens] 38 0.012
gi|153791330 leucine rich repeat neuronal 1 [Homo sapiens] 38 0.016
gi|126517478 peroxidasin homolog-like [Homo sapiens] 38 0.016
gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens] 37 0.021
gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens] 37 0.021
gi|122937309 leucine rich repeat containing 4B [Homo sapiens] 37 0.028
gi|110349719 titin isoform N2-A [Homo sapiens] 37 0.036
gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens] 37 0.036
gi|15147240 brother of CDO [Homo sapiens] 37 0.036
gi|110431348 deleted in colorectal carcinoma [Homo sapiens] 36 0.061
gi|104294888 fms-related tyrosine kinase 4 isoform 1 precursor [... 35 0.080
gi|103472027 fms-related tyrosine kinase 4 isoform 2 precursor [... 35 0.080
gi|109150416 peroxidasin [Homo sapiens] 35 0.080
gi|45592949 transmembrane and immunoglobulin domain containing [... 35 0.080
gi|24111244 MAM domain containing glycosylphosphatidylinositol a... 35 0.10
gi|122937205 carcinoembryonic antigen-related cell adhesion mole... 35 0.10
gi|28373122 contactin 4 isoform a precursor [Homo sapiens] 35 0.14
>gi|5174555 microfibrillar-associated protein 3 isoform 1 [Homo
sapiens]
Length = 362
Score = 720 bits (1859), Expect = 0.0
Identities = 362/362 (100%), Positives = 362/362 (100%)
Query: 1 MKLHCCLFTLVASIIVPAAFVLEDVDFDQMVSLEANRSSYNASFPSSFELSASSHSDDDV 60
MKLHCCLFTLVASIIVPAAFVLEDVDFDQMVSLEANRSSYNASFPSSFELSASSHSDDDV
Sbjct: 1 MKLHCCLFTLVASIIVPAAFVLEDVDFDQMVSLEANRSSYNASFPSSFELSASSHSDDDV 60
Query: 61 IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRG 120
IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRG
Sbjct: 61 IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRG 120
Query: 121 LYTCFVTSPIRASYSVTLRVIFTSGDMSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKT 180
LYTCFVTSPIRASYSVTLRVIFTSGDMSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKT
Sbjct: 121 LYTCFVTSPIRASYSVTLRVIFTSGDMSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKT 180
Query: 181 EKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVP 240
EKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVP
Sbjct: 181 EKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVP 240
Query: 241 LPPLILNCRAFVEEMFEAVRVDDPDDLGERIKERPALNAQGGIYVINPEMGRSNSPGGDS 300
LPPLILNCRAFVEEMFEAVRVDDPDDLGERIKERPALNAQGGIYVINPEMGRSNSPGGDS
Sbjct: 241 LPPLILNCRAFVEEMFEAVRVDDPDDLGERIKERPALNAQGGIYVINPEMGRSNSPGGDS 300
Query: 301 DDGSLNEQGQEIAVQVSVHLQSETKSIDTESQGSSHFSPPDDIGSAESNCNYKDGAYENC 360
DDGSLNEQGQEIAVQVSVHLQSETKSIDTESQGSSHFSPPDDIGSAESNCNYKDGAYENC
Sbjct: 301 DDGSLNEQGQEIAVQVSVHLQSETKSIDTESQGSSHFSPPDDIGSAESNCNYKDGAYENC 360
Query: 361 QL 362
QL
Sbjct: 361 QL 362
>gi|205277369 microfibrillar-associated protein 3 isoform 2 [Homo
sapiens]
Length = 216
Score = 429 bits (1103), Expect = e-120
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 147 MSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRI 206
MSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRI
Sbjct: 1 MSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRI 60
Query: 207 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDD 266
PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDD
Sbjct: 61 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDD 120
Query: 267 LGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKS 326
LGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKS
Sbjct: 121 LGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKS 180
Query: 327 IDTESQGSSHFSPPDDIGSAESNCNYKDGAYENCQL 362
IDTESQGSSHFSPPDDIGSAESNCNYKDGAYENCQL
Sbjct: 181 IDTESQGSSHFSPPDDIGSAESNCNYKDGAYENCQL 216
>gi|153792329 microfibrillar-associated protein 3-like isoform 1
[Homo sapiens]
Length = 409
Score = 303 bits (776), Expect = 2e-82
Identities = 167/283 (59%), Positives = 202/283 (71%), Gaps = 8/283 (2%)
Query: 59 DVIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQL----DGRSRGG-KWLVSDN-FLNIT 112
D II KEG S I C + W+NS G+ L D + RGG KW + D+ LNIT
Sbjct: 54 DHIIVKEGNSALINCSVYGIPDPQFKWYNSIGKLLKEEEDEKERGGGKWQMHDSGLLNIT 113
Query: 113 NVAFDDRGLYTCFVTSPI-RASYSVTLRVIFTSGDMSVYYMIVCLIAFTITLILNVTRLC 171
V+F DRG YTC ++ + +VTLRVIFTSGDM VYYM+VCL+AFTI ++LN+TRLC
Sbjct: 114 KVSFSDRGKYTCVASNIYGTVNNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMVLNITRLC 173
Query: 172 MMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARY 231
MMSSHL+KTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARY
Sbjct: 174 MMSSHLKKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARY 233
Query: 232 IEELARSVPLPPLILNCRAFVEEMFEAVRVDDP-DDLGERIKERPALNAQGGIYVINPEM 290
IEELARSVPLPPLI+NCR +EE+ E V +++ + E + +Y I +
Sbjct: 234 IEELARSVPLPPLIMNCRTIMEEIMEVVGLEEQGQNFVRHTPEGQEAADRDEVYTIPNSL 293
Query: 291 GRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKSIDTESQG 333
RS+SP DSD SL+EQ Q+IA++VSVH QS+ + D + G
Sbjct: 294 KRSDSPAADSDASSLHEQPQQIAIKVSVHPQSKKEHADDQEGG 336
>gi|57222338 microfibrillar-associated protein 3-like isoform 2
[Homo sapiens]
Length = 306
Score = 279 bits (713), Expect = 3e-75
Identities = 146/227 (64%), Positives = 175/227 (77%), Gaps = 2/227 (0%)
Query: 109 LNITNVAFDDRGLYTCFVTSPI-RASYSVTLRVIFTSGDMSVYYMIVCLIAFTITLILNV 167
LNIT V+F DRG YTC ++ + +VTLRVIFTSGDM VYYM+VCL+AFTI ++LN+
Sbjct: 7 LNITKVSFSDRGKYTCVASNIYGTVNNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMVLNI 66
Query: 168 TRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTME 227
TRLCMMSSHL+KTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTME
Sbjct: 67 TRLCMMSSHLKKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTME 126
Query: 228 FARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDP-DDLGERIKERPALNAQGGIYVI 286
FARYIEELARSVPLPPLI+NCR +EE+ E V +++ + E + +Y I
Sbjct: 127 FARYIEELARSVPLPPLIMNCRTIMEEIMEVVGLEEQGQNFVRHTPEGQEAADRDEVYTI 186
Query: 287 NPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKSIDTESQG 333
+ RS+SP DSD SL+EQ Q+IA++VSVH QS+ + D + G
Sbjct: 187 PNSLKRSDSPAADSDASSLHEQPQQIAIKVSVHPQSKKEHADDQEGG 233
>gi|153791507 leucine rich repeat neuronal 3 [Homo sapiens]
Length = 708
Score = 42.4 bits (98), Expect = 7e-04
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 43 SFPSSFELSASSHSDDDVIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKW 102
SFPS+ + A S+ VS C TA +++W GQ+L + K+
Sbjct: 427 SFPSNLNVEAGSY-------------VSFHCRATAEPQPEIYWITPSGQKLLPNTLTDKF 473
Query: 103 LV-SDNFLNITNVAFDDRGLYTCFVTSPIRASY-SVTLRV 140
V S+ L+I V + GLYTC T+ + A SV ++V
Sbjct: 474 YVHSEGTLDINGVTPKEGGLYTCIATNLVGADLKSVMIKV 513
>gi|153792651 leucine rich repeat neuronal 3 [Homo sapiens]
Length = 708
Score = 42.4 bits (98), Expect = 7e-04
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 43 SFPSSFELSASSHSDDDVIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKW 102
SFPS+ + A S+ VS C TA +++W GQ+L + K+
Sbjct: 427 SFPSNLNVEAGSY-------------VSFHCRATAEPQPEIYWITPSGQKLLPNTLTDKF 473
Query: 103 LV-SDNFLNITNVAFDDRGLYTCFVTSPIRASY-SVTLRV 140
V S+ L+I V + GLYTC T+ + A SV ++V
Sbjct: 474 YVHSEGTLDINGVTPKEGGLYTCIATNLVGADLKSVMIKV 513
>gi|153792227 leucine rich repeat neuronal 3 [Homo sapiens]
Length = 708
Score = 42.4 bits (98), Expect = 7e-04
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 43 SFPSSFELSASSHSDDDVIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKW 102
SFPS+ + A S+ VS C TA +++W GQ+L + K+
Sbjct: 427 SFPSNLNVEAGSY-------------VSFHCRATAEPQPEIYWITPSGQKLLPNTLTDKF 473
Query: 103 LV-SDNFLNITNVAFDDRGLYTCFVTSPIRASY-SVTLRV 140
V S+ L+I V + GLYTC T+ + A SV ++V
Sbjct: 474 YVHSEGTLDINGVTPKEGGLYTCIATNLVGADLKSVMIKV 513
>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
Length = 1349
Score = 41.6 bits (96), Expect = 0.001
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 61 IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRG 120
I AKEG S+++ C + V W K L G S GK+ VSD L +T+V+ +DRG
Sbjct: 149 IEAKEGGSITMTCTAFGNPKPIVTW--LKEGTLLGAS--GKYQVSDGSLTVTSVSREDRG 204
Query: 121 LYTC 124
YTC
Sbjct: 205 AYTC 208
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 40.0 bits (92), Expect = 0.003
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 64 KEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRGLYT 123
KE SV++ C +T + ++ WH GQ L + FL ITNV G YT
Sbjct: 2492 KEKQSVTLTCEVTGNPVPEITWHKD-GQPLQ-EDEAHHIISGGRFLQITNVQVPHTGRYT 2549
Query: 124 CFVTSP 129
C +SP
Sbjct: 2550 CLASSP 2555
Score = 31.6 bits (70), Expect = 1.2
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 60 VIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDR 119
V+ +EGTSVS+EC A + W+ K ++ S + L L+I D
Sbjct: 3068 VVNVREGTSVSLECESNAVPPPVITWY--KNGRMITESTHVEILADGQMLHIKKAEVSDT 3125
Query: 120 GLYTC 124
G Y C
Sbjct: 3126 GQYVC 3130
Score = 30.8 bits (68), Expect = 2.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 69 VSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRGLYTCFVTS 128
V++EC + + + D+HW G+ L + L L++ N +D+G Y C V++
Sbjct: 1471 VALECQVKGTPFPDIHWFKD-GKPLFLGDPNVELLDRGQVLHLKNARRNDKGRYQCTVSN 1529
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 53 SSHSDDDVIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNIT 112
+S S II G S+S+EC + V W + +++G + L + L +
Sbjct: 2294 NSGSHPTEIIVTRGKSISLECEVQGIPPPTVTWMKDGHPLI--KAKGVEILDEGHILQLK 2351
Query: 113 NVAFDDRGLYTC 124
N+ D G Y C
Sbjct: 2352 NIHVSDTGRYVC 2363
>gi|157168355 CD22 molecule [Homo sapiens]
Length = 847
Score = 38.5 bits (88), Expect = 0.009
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 11/79 (13%)
Query: 66 GTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRGLYTCF 125
G SVS++C ++SH ++V + K +L G+ ++ LN +++ +D G Y+C+
Sbjct: 522 GNSVSLQCDFSSSHPKEVQFFWEKNGRLLGK---------ESQLNFDSISPEDAGSYSCW 572
Query: 126 VTSPI--RASYSVTLRVIF 142
V + I AS + TL V++
Sbjct: 573 VNNSIGQTASKAWTLEVLY 591
>gi|57222563 colonic and hepatic tumor over-expressed protein
isoform b [Homo sapiens]
Length = 1972
Score = 38.5 bits (88), Expect = 0.009
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 181 EKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVP 240
EKA+N F KL K E ++++ +I K A +FK P
Sbjct: 472 EKAVNPFLADVDKLKLDKIKECSEKVELIHGKKAGLAADKKEFK---------------P 516
Query: 241 LPPLILNCRAFVEEMFEAVRVDDPDDLGERIKERPALNAQGGIYVINPEMGRSNSPGGDS 300
LP A ++ + + P L K+ PA A G P+ G+ +PGG
Sbjct: 517 LPGRTAASGAAGDKDTKDISAPKPGPL----KKAPAAKAGG-----PPKKGKPAAPGGAG 567
Query: 301 DDGSLNEQGQEIAVQVSVHLQSETKSIDTESQGSSHFSPPDDIGSAESNCNYKD 354
+ G+ N++G E V L SI+ + +S PP I +S+ N+K+
Sbjct: 568 NTGTKNKKGLETKEIVEPEL-----SIEVCEEKASAVLPPTCIQLLDSS-NWKE 615
>gi|57164942 colonic and hepatic tumor over-expressed protein
isoform a [Homo sapiens]
Length = 2032
Score = 38.5 bits (88), Expect = 0.009
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 181 EKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVP 240
EKA+N F KL K E ++++ +I K A +FK P
Sbjct: 472 EKAVNPFLADVDKLKLDKIKECSEKVELIHGKKAGLAADKKEFK---------------P 516
Query: 241 LPPLILNCRAFVEEMFEAVRVDDPDDLGERIKERPALNAQGGIYVINPEMGRSNSPGGDS 300
LP A ++ + + P L K+ PA A G P+ G+ +PGG
Sbjct: 517 LPGRTAASGAAGDKDTKDISAPKPGPL----KKAPAAKAGG-----PPKKGKPAAPGGAG 567
Query: 301 DDGSLNEQGQEIAVQVSVHLQSETKSIDTESQGSSHFSPPDDIGSAESNCNYKD 354
+ G+ N++G E V L SI+ + +S PP I +S+ N+K+
Sbjct: 568 NTGTKNKKGLETKEIVEPEL-----SIEVCEEKASAVLPPTCIQLLDSS-NWKE 615
>gi|51317373 netrin-G1 ligand [Homo sapiens]
Length = 640
Score = 38.5 bits (88), Expect = 0.009
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 65 EGTSVSIECLLTASHYEDVHWHNSKGQQLD-GRSRGGKWLVSDNFLNITNVAFDDRGLYT 123
EG + ++C + S V W G + G + ++SD LN TNV D G+YT
Sbjct: 367 EGMAAELKCRASTS-LTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYT 425
Query: 124 CFVTSPI-RASYSVTLRVIFTSGDMSVYYMIV 154
C V++ + + S TL V + Y+ V
Sbjct: 426 CMVSNSVGNTTASATLNVTAATTTPFSYFSTV 457
>gi|7657361 contactin 6 [Homo sapiens]
Length = 1028
Score = 38.1 bits (87), Expect = 0.012
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 59 DVIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDD 118
+ I A + +SV +EC + D+ W G L G+ + K S L I N +D
Sbjct: 235 ETIQAAKDSSVKLECFALGNPVPDISWRRLDGSPLPGKVKYSK---SQAILEIPNFQQED 291
Query: 119 RGLYTCFVTS 128
G Y C ++
Sbjct: 292 EGFYECIASN 301
>gi|153791330 leucine rich repeat neuronal 1 [Homo sapiens]
Length = 716
Score = 37.7 bits (86), Expect = 0.016
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 66 GTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKW-LVSDNFLNITNVAFDDRGLYTC 124
GT+V ++C A +++W G ++ + K+ L S+ L I+N+ +D G YTC
Sbjct: 440 GTTVFLDCRAMAEPEPEIYWVTPIGNKITVETLSDKYKLSSEGTLEISNIQIEDSGRYTC 499
>gi|126517478 peroxidasin homolog-like [Homo sapiens]
Length = 1463
Score = 37.7 bits (86), Expect = 0.016
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 57 DDDVIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAF 116
D +V+I GTS ++EC+ T + + W G +LD G + + + + L + N+
Sbjct: 338 DTEVLI---GTSTTLECMATGHPHPLITWTRDNGLELD----GSRHVATSSGLYLQNITQ 390
Query: 117 DDRGLYTC 124
D G +TC
Sbjct: 391 RDHGRFTC 398
>gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens]
Length = 1018
Score = 37.4 bits (85), Expect = 0.021
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 24/122 (19%)
Query: 61 IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVS--------DNFLNIT 112
I+A +G V IEC A+ W S+G +WLV+ D L I
Sbjct: 424 ILAAKGGRVIIECKPKAAPKPKFSW-----------SKGTEWLVNSSRILIWEDGSLEIN 472
Query: 113 NVAFDDRGLYTCFVTSPIRASYSVTLRVIFTSGDMSVYYMIVCLIAFTITLILNVTRLCM 172
N+ +D G+YTCF + R + T ++ T +I+ I IT+ N T C
Sbjct: 473 NITRNDGGIYTCFAENN-RGKANSTGTLVITDPTR----IILAPINADITVGENATMQCA 527
Query: 173 MS 174
S
Sbjct: 528 AS 529
Score = 30.8 bits (68), Expect = 2.0
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 61 IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRG 120
+ A G +V++EC + D+ W + L+ + S L I N+ +D G
Sbjct: 251 VYALMGQNVTLECFALGNPVPDIRWR----KVLEPMPSTAEISTSGAVLKIFNIQLEDEG 306
Query: 121 LYTC 124
+Y C
Sbjct: 307 IYEC 310
Score = 28.9 bits (63), Expect = 7.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 109 LNITNVAFDDRGLYTCFVTSP 129
L I NV D+G Y+CFV+SP
Sbjct: 196 LYIANVEASDKGNYSCFVSSP 216
>gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens]
Length = 1007
Score = 37.4 bits (85), Expect = 0.021
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 24/122 (19%)
Query: 61 IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVS--------DNFLNIT 112
I+A +G V IEC A+ W S+G +WLV+ D L I
Sbjct: 413 ILAAKGGRVIIECKPKAAPKPKFSW-----------SKGTEWLVNSSRILIWEDGSLEIN 461
Query: 113 NVAFDDRGLYTCFVTSPIRASYSVTLRVIFTSGDMSVYYMIVCLIAFTITLILNVTRLCM 172
N+ +D G+YTCF + R + T ++ T +I+ I IT+ N T C
Sbjct: 462 NITRNDGGIYTCFAENN-RGKANSTGTLVITDPTR----IILAPINADITVGENATMQCA 516
Query: 173 MS 174
S
Sbjct: 517 AS 518
Score = 30.8 bits (68), Expect = 2.0
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 61 IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRG 120
+ A G +V++EC + D+ W + L+ + S L I N+ +D G
Sbjct: 240 VYALMGQNVTLECFALGNPVPDIRWR----KVLEPMPSTAEISTSGAVLKIFNIQLEDEG 295
Query: 121 LYTC 124
+Y C
Sbjct: 296 IYEC 299
Score = 28.9 bits (63), Expect = 7.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 109 LNITNVAFDDRGLYTCFVTSP 129
L I NV D+G Y+CFV+SP
Sbjct: 185 LYIANVEASDKGNYSCFVSSP 205
>gi|122937309 leucine rich repeat containing 4B [Homo sapiens]
Length = 713
Score = 37.0 bits (84), Expect = 0.028
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 65 EGTSVSIECLLTASHYEDVHWHNSKGQQLD-GRSRGGKWLVSDNFLNITNVAFDDRGLYT 123
EG + ++C T + V+W G + G R ++ D LN TNV D G YT
Sbjct: 377 EGMAAELKCR-TGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYT 435
Query: 124 CFVT-SPIRASYSVTLRV 140
C VT S + S TL V
Sbjct: 436 CMVTNSAGNTTASATLNV 453
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 36.6 bits (83), Expect = 0.036
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 9/140 (6%)
Query: 6 CLFTLVASIIVPAAFVLEDVDFDQMVSLEANRSSYNASF----PSSFELSASSHSDDDVI 61
C +A++ +P A + + + S EA SS +A+ P SF D
Sbjct: 3693 CFEDKIATLEIPLAKLKDSGTYVCTASNEAGSSSCSATVTVREPPSFVKKV-----DPSY 3747
Query: 62 IAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRGL 121
+ G S + C L S V W + + + + ++ S+ L+IT+V +D G
Sbjct: 3748 LMLPGESARLHCKLKGSPVIQVTWFKNNKELSESNTVRMYFVNSEAILDITDVKVEDSGS 3807
Query: 122 YTCFVTSPIRASYSVTLRVI 141
Y+C + + + T VI
Sbjct: 3808 YSCEAVNDVGSDSCSTEIVI 3827
Score = 36.2 bits (82), Expect = 0.047
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 65 EGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDN--FLNITNVAFDDRGLY 122
+G+ + +EC++ SH + W K Q S K+ DN FL I+ + D G Y
Sbjct: 4688 KGSFIDLECIVAGSHPISIQWF--KDDQEISASEKYKFSFHDNTAFLEISQLEGTDSGTY 4745
Query: 123 TCFVTS 128
TC T+
Sbjct: 4746 TCSATN 4751
Score = 32.7 bits (73), Expect = 0.52
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 62 IAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRGL 121
+AK+G S+ +EC ++ S V W + + + ++ S L I + +D G
Sbjct: 6375 VAKQGESIQLECKISGSPEIKVSWFRNDSELHESWKYNMSFINSVALLTINEASAEDSGD 6434
Query: 122 YTC 124
Y C
Sbjct: 6435 YIC 6437
Score = 32.3 bits (72), Expect = 0.68
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 66 GTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRGLYTCF 125
G V +C ++ S V W+ D + +L + LNI G Y+C
Sbjct: 8071 GLPVVFDCAISGSEPISVSWYKDGKPLKDSPNVQTSFLDNTATLNIFKTDRSLAGQYSCT 8130
Query: 126 VTSPIRASYSVTLRVIFTSGDMSVYYMI 153
T+PI S S + R+I T G ++ I
Sbjct: 8131 ATNPI-GSASSSARLILTEGKNPPFFDI 8157
Score = 31.6 bits (70), Expect = 1.2
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 65 EGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFL---NITNVAFDDRGL 121
+G V +EC L + V W+ K + G+ ++S+NFL +I NV D G
Sbjct: 7412 KGADVHLECELQGTPPFHVSWYKDKRELRSGKKYK---IMSENFLTSIHILNVDAADIGE 7468
Query: 122 YTCFVTSPI 130
Y C T+ +
Sbjct: 7469 YQCKATNDV 7477
Score = 29.6 bits (65), Expect = 4.4
Identities = 16/65 (24%), Positives = 25/65 (38%)
Query: 66 GTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRGLYTCF 125
G S EC +T + V W + G +L + L + V D G YTC+
Sbjct: 8167 GESADFECHVTGTQPIKVSWAKDSREIRSGGKYQISYLENSAHLTVLKVDKGDSGQYTCY 8226
Query: 126 VTSPI 130
+ +
Sbjct: 8227 AVNEV 8231
Score = 28.9 bits (63), Expect = 7.5
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 66 GTSVSIECLLTASHYEDVHWHNSKGQQLDGR--SRGGKWLVSD----NFLNITNVAFDDR 119
G + C +T + + W Q DG S W +SD + L ++N+ DR
Sbjct: 3565 GKAAKFICTVTGTPVIETIW------QKDGAALSPSPNWRISDAENKHILELSNLTIQDR 3618
Query: 120 GLYTC 124
G+Y+C
Sbjct: 3619 GVYSC 3623
Score = 28.9 bits (63), Expect = 7.5
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 60 VIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNF---LNITNVAF 116
++ + VS+EC L+ + +V W+ K Q RS + S NF ++I NV
Sbjct: 5525 IVETLKNAEVSLECELSGTPPFEVVWYKDKRQL---RSSKKYKIASKNFHTSIHILNVDT 5581
Query: 117 DDRGLYTC 124
D G Y C
Sbjct: 5582 SDIGEYHC 5589
Score = 28.9 bits (63), Expect = 7.5
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 94 DGRS--RGGKWLVSDN----FLNITNVAFDDRGLYTCFV---TSPIRASYSVTLRVI 141
DG++ +GGK+ +S++ FL I D GLYTC V + +S +T++ I
Sbjct: 32888 DGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 32944
Score = 28.5 bits (62), Expect = 9.8
Identities = 13/70 (18%), Positives = 27/70 (38%)
Query: 61 IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRG 120
+ K G + + C + D+ W+ + + R + L + +D G
Sbjct: 30542 VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEG 30601
Query: 121 LYTCFVTSPI 130
+YTC T+ +
Sbjct: 30602 VYTCIATNEV 30611
>gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens]
Length = 2623
Score = 36.6 bits (83), Expect = 0.036
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 60 VIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGR--SRGGKWLVSDNFLNITNVAFD 117
VI+ G S+ + C + V+W S G ++ + +L S+ L I N+A
Sbjct: 1851 VIVGTWGESLKLPCTAKGTPQPSVYWVLSDGTEVKPLQFTNSKLFLFSNGTLYIRNLASS 1910
Query: 118 DRGLYTCFVTS 128
DRG Y C TS
Sbjct: 1911 DRGTYECIATS 1921
Score = 33.1 bits (74), Expect = 0.40
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 61 IIAKEGTSVSIECLLTASHYEDVHW----HNSKGQQLDGRSRGGKWLVSDNFLNITNVAF 116
I+ + G + + C+ ++ W H+ R+ G + L L I N
Sbjct: 2538 IVTRTGAAFQLHCVALGVPKPEITWEMPDHSLLSTASKERTHGSEQLHLQGTLVIQNPQT 2597
Query: 117 DDRGLYTCFVTSPIRASYSVT 137
D G+Y C +P+ + Y+ T
Sbjct: 2598 SDSGIYKCTAKNPLGSDYAAT 2618
Score = 31.2 bits (69), Expect = 1.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 66 GTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDN-FLNITNVAFDDRGLYTC 124
G S+S+ C+ ++ W G +D GK+++ DN L I DRG Y C
Sbjct: 2447 GESLSLHCVSDGIPKPNIKWTMPSGYVVDRPQINGKYILHDNGTLVIKEATAYDRGNYIC 2506
Score = 29.6 bits (65), Expect = 4.4
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 61 IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVS--DNFLNITNVAFDD 118
I G++V ++C V W + + S+G + V D L + N++ D
Sbjct: 1755 ITVHSGSTVELKCRAEGRPSPTVTWILANQTVVSESSQGSRQAVVTVDGTLVLHNLSIYD 1814
Query: 119 RGLYTCFVTSP 129
RG Y C ++P
Sbjct: 1815 RGFYKCVASNP 1825
>gi|15147240 brother of CDO [Homo sapiens]
Length = 1114
Score = 36.6 bits (83), Expect = 0.036
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 60 VIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDR 119
VI EG + I C L SH + ++ K + L+ SRG ++ L I N + +D
Sbjct: 137 VIEVDEGNTAVIACHLPESHPKAQVRYSVKQEWLEA-SRGNYLIMPSGNLQIVNASQEDE 195
Query: 120 GLYTCFVTSPI 130
G+Y C +P+
Sbjct: 196 GMYKCAAYNPV 206
>gi|110431348 deleted in colorectal carcinoma [Homo sapiens]
Length = 1447
Score = 35.8 bits (81), Expect = 0.061
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 61 IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRG 120
++A EG +EC ++ W + + + RS+ L N L I+NV DD G
Sbjct: 249 VVAIEGKDAVLECCVSGYPPPSFTWLRGE-EVIQLRSKKYSLLGGSNLL-ISNVTDDDSG 306
Query: 121 LYTCFVT---SPIRASYSVTLRV 140
+YTC VT I AS +T+ V
Sbjct: 307 MYTCVVTYKNENISASAELTVLV 329
>gi|104294888 fms-related tyrosine kinase 4 isoform 1 precursor
[Homo sapiens]
Length = 1363
Score = 35.4 bits (80), Expect = 0.080
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 61 IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRG 120
++ S+ ++CL+ +H + W+ K ++L G S+ L+I V +D G
Sbjct: 687 LLVNVSDSLEMQCLVAGAHAPSIVWY--KDERLLEEKSGVDLADSNQKLSIQRVREEDAG 744
Query: 121 LYTCFVTSP---IRASYSVTLRVIFTSGDMSVYYMI---VCLIAFTITLIL 165
Y C V + + +S SV + G M + ++ V + F + L+L
Sbjct: 745 RYLCSVCNAKGCVNSSASVAVEGSEDKGSMEIVILVGTGVIAVFFWVLLLL 795
>gi|103472027 fms-related tyrosine kinase 4 isoform 2 precursor
[Homo sapiens]
Length = 1298
Score = 35.4 bits (80), Expect = 0.080
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 61 IIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRG 120
++ S+ ++CL+ +H + W+ K ++L G S+ L+I V +D G
Sbjct: 687 LLVNVSDSLEMQCLVAGAHAPSIVWY--KDERLLEEKSGVDLADSNQKLSIQRVREEDAG 744
Query: 121 LYTCFVTSP---IRASYSVTLRVIFTSGDMSVYYMI---VCLIAFTITLIL 165
Y C V + + +S SV + G M + ++ V + F + L+L
Sbjct: 745 RYLCSVCNAKGCVNSSASVAVEGSEDKGSMEIVILVGTGVIAVFFWVLLLL 795
>gi|109150416 peroxidasin [Homo sapiens]
Length = 1479
Score = 35.4 bits (80), Expect = 0.080
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 52 ASSHSDDDVIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVS-DNFLN 110
AS SD V + G +V + C + W N G Q+ + GK+ +S + FL
Sbjct: 528 ASIPSDTTVEV---GANVQLPCSSQGEPEPAITW-NKDGVQV---TESGKFHISPEGFLT 580
Query: 111 ITNVAFDDRGLYTCFVTSPI-RASYSVTLRV----IFTSGDMSVYYMIVCLIAFTITLIL 165
I +V D G Y C + I AS S+ L V + +GD V IV IA T+ +
Sbjct: 581 INDVGPADAGRYECVARNTIGSASVSMVLSVNVPDVSRNGDPFVATSIVEAIA-TVDRAI 639
Query: 166 NVTRLCMMSSHLR 178
N TR + S R
Sbjct: 640 NSTRTHLFDSRPR 652
>gi|45592949 transmembrane and immunoglobulin domain containing
[Homo sapiens]
Length = 262
Score = 35.4 bits (80), Expect = 0.080
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 28 DQMVSLEANRSSYNASFPSSFELSASSHSDDDVIIAKEGTSVSIECLLTASHYEDVHWHN 87
DQ VS+ N +FP S +D +EG++V + C + A+ + W+
Sbjct: 108 DQSVSVSV---VLNVTFPPLL-------SGNDFQTVEEGSNVKLVCNVKANPQAQMMWYK 157
Query: 88 SKGQQLDGRSRGGKWLVSDNF-LNITNVAFDDRGLYTCFVTSPIRASYSVTLRVIFTSGD 146
+ +SR S++F L+IT V D G Y+C S ++ S+ +I D
Sbjct: 158 NSSLLDLEKSRHQIQQTSESFQLSITKVEKPDNGTYSCIAKSSLKTE-SLDFHLIVK--D 214
Query: 147 MSVYYMIVCLIAFTITLILNV 167
+V I +IA + + L +
Sbjct: 215 KTVGVPIEPIIAACVVIFLTL 235
>gi|24111244 MAM domain containing glycosylphosphatidylinositol
anchor 1 [Homo sapiens]
Length = 955
Score = 35.0 bits (79), Expect = 0.10
Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 17/180 (9%)
Query: 41 NASFPSSFELSASSHSDDDVIIAKEGTSVSIECLLTASH-YEDVHWHNSKGQ-QLDGRSR 98
N + P + +LS + + ++ G +V+++CLLT + W + G L ++
Sbjct: 235 NTTAPPALKLSVN-----ETLVVNPGENVTVQCLLTGGDPLPQLQWSHGPGPLPLGALAQ 289
Query: 99 GGKWLVSDNFLNITNVAFDDRGLYTCFVTSPIRASYSVTLRVIFTSGDMSVYYMIVCLIA 158
GG L+I +V D G Y C T+ + T+ ++ S + + + +I
Sbjct: 290 GGT-------LSIPSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSMKNATFQITPDVIK 342
Query: 159 FTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAK---RIPIITSAKTL 215
+ + L EK ++F+ ++ K + + +P +TS+ L
Sbjct: 343 ESENIQLGQDLKLSCHVDAVPQEKVTYQWFKNGKPARMSKRLLVTRNDPELPAVTSSLEL 402
>gi|122937205 carcinoembryonic antigen-related cell adhesion
molecule 18 [Homo sapiens]
Length = 398
Score = 35.0 bits (79), Expect = 0.10
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 35 ANRSSYNASFPSSFELSASSHSD-DDVIIAKEGTSVSIECLLTASHYEDVHW-HNSKGQQ 92
+ R S ++ + L S+ D + ++ A+ G+ V +EC+ + HW HN
Sbjct: 277 SERISLTVAYGPDYVLLRSNPDDFNGIVTAEIGSQVEMECICYSFLDLKYHWIHN----- 331
Query: 93 LDGRSRGGKWLVSDNFLNITNVAFDDRGLYTCFVTSPI 130
G SD +N++++A++ G Y C V +P+
Sbjct: 332 ------GSLLNFSDAKMNLSSLAWEQMGRYRCTVENPV 363
>gi|28373122 contactin 4 isoform a precursor [Homo sapiens]
Length = 1026
Score = 34.7 bits (78), Expect = 0.14
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 59 DVIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDD 118
+ + +G +V +EC + + W + G+ + ++R K S+ L I N +D
Sbjct: 233 ETVPTAKGATVKLECFALGNPVPTIIWRRADGKPIARKARRHK---SNGILEIPNFQQED 289
Query: 119 RGLYTC 124
GLY C
Sbjct: 290 AGLYEC 295
Score = 30.4 bits (67), Expect = 2.6
Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 30/225 (13%)
Query: 60 VIIAKEGTSVSIECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDR 119
V + K G V IEC AS W KG+ + + + D L I NV D
Sbjct: 416 VTLVKVGGEVVIECKPKASPKPVYTW--KKGRDIL-KENERITISEDGNLRIINVTKSDA 472
Query: 120 GLYTCFVTSPIRASYSVTLRVIF---------TSGDMSVYYMIVCLIAFTITLILNVTRL 170
G YTC T+ + S V+ +S D++V IV T L++
Sbjct: 473 GSYTCIATNHFGTASSTGNLVVKDPTRVMVPPSSMDVTVGESIVLPCQVTHDHSLDIVFT 532
Query: 171 CMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFAR 230
+ HL ++ + F R G + + + I + + K + + + + + A
Sbjct: 533 WSFNGHLIDFDRDGDHFERVGGQDSAGDL--MIRNIQLKHAGKYVCMVQTSVDRLSAAA- 589
Query: 231 YIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDDLGERIKERP 275
+ + R P PP EAV +D+ D ++ RP
Sbjct: 590 --DLIVRGPPGPP-------------EAVTIDEITDTTAQLSWRP 619
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,719,240
Number of Sequences: 37866
Number of extensions: 523046
Number of successful extensions: 2137
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 1851
Number of HSP's gapped (non-prelim): 370
length of query: 362
length of database: 18,247,518
effective HSP length: 104
effective length of query: 258
effective length of database: 14,309,454
effective search space: 3691839132
effective search space used: 3691839132
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.