Guide to the Human Genome
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Name: MFAP3 Sequence: fasta or formatted (362aa) NCBI GI: 5174555
Description:

microfibrillar-associated protein 3 isoform 1

Referenced in:

Extracellular Matrix

Other entries for this name:
alt prot [216aa] microfibrillar-associated protein 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         26           2
 C cysteine            2.5          9           2
 D aspartate           6.4         23           3
 E glutamate           7.5         27           2
 F phenylalanine       5.0         18           2
 G glycine             5.2         19           2
 H histidine           2.2          8           1
 I isoleucine          6.9         25           2
 K lysine              4.1         15           1
 L leucine             8.3         30           2
 M methionine          2.5          9           2
 N asparagine          4.4         16           1
 P proline             3.6         13           2
 Q glutamine           3.3         12           2
 R arginine            4.7         17           1
 S serine             10.8         39           2
 T threonine           5.2         19           1
 V valine              6.9         25           1
 W tryptophan          0.6          2           1
 Y tyrosine            2.8         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   microfibrillar-associated protein 3 isoform 1 
MFAP3                 0.581   microfibrillar-associated protein 3 isoform 2 [Homo...
MFAP3L                0.400   microfibrillar-associated protein 3-like isoform 1 ...
MFAP3L                0.365   microfibrillar-associated protein 3-like isoform 2 [...
LRRN3                 0.024   leucine rich repeat neuronal 3 
LRRN3                 0.024   leucine rich repeat neuronal 3 
LRRN3                 0.024   leucine rich repeat neuronal 3 
IGSF9B                0.024   immunoglobulin superfamily, member 9B 
HMCN1                 0.022   hemicentin 1 
CD22                  0.020   CD22 molecule 
CKAP5                 0.020   colonic and hepatic tumor over-expressed protein iso...
CKAP5                 0.020   colonic and hepatic tumor over-expressed protein iso...
LRRC4C                0.020   netrin-G1 ligand 
CNTN6                 0.019   contactin 6 
LRRN1                 0.019   leucine rich repeat neuronal 1 
PXDNL                 0.019   peroxidasin homolog-like 
CNTN1                 0.017   contactin 1 isoform 1 precursor 
CNTN1                 0.017   contactin 1 isoform 2 precursor 
LRRC4B                0.017   leucine rich repeat containing 4B 
TTN                   0.017   titin isoform N2-A 
IGSF10                0.017   immunoglobulin superfamily, member 10 
BOC                   0.017   brother of CDO 
DCC                   0.016   deleted in colorectal carcinoma 
FLT4                  0.014   fms-related tyrosine kinase 4 isoform 1 precursor [...
FLT4                  0.014   fms-related tyrosine kinase 4 isoform 2 precursor [...
PXDN                  0.014   peroxidasin 
TMIGD1                0.014   transmembrane and immunoglobulin domain containing [...
MDGA1                 0.014   MAM domain containing glycosylphosphatidylinositol a...
CEACAM18              0.014   carcinoembryonic antigen-related cell adhesion mole...
CNTN4                 0.014   contactin 4 isoform a precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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