Guide to the Human Genome
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Name: TMIGD1 Sequence: fasta or formatted (262aa) NCBI GI: 45592949
Description:

transmembrane and immunoglobulin domain containing

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         10           2
 C cysteine            3.1          8           1
 D aspartate           4.2         11           1
 E glutamate           6.1         16           3
 F phenylalanine       3.4          9           1
 G glycine             4.6         12           1
 H histidine           1.5          4           1
 I isoleucine          6.5         17           2
 K lysine              7.3         19           2
 L leucine            10.7         28           3
 M methionine          3.1          8           2
 N asparagine          5.3         14           1
 P proline             3.4          9           2
 Q glutamine           4.2         11           2
 R arginine            3.8         10           2
 S serine             11.5         30           3
 T threonine           6.1         16           2
 V valine              8.8         23           2
 W tryptophan          1.1          3           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane and immunoglobulin domain containing [... 
NCAM1                 0.083   neural cell adhesion molecule 1 isoform 2 
NCAM1                 0.075   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.075   neural cell adhesion molecule 1 isoform 3 
DSCAM                 0.071   Down syndrome cell adhesion molecule isoform CHD2-42...
FSTL5                 0.067   follistatin-like 5 isoform c 
FSTL5                 0.067   follistatin-like 5 isoform b 
FSTL5                 0.067   follistatin-like 5 isoform a 
MUSK                  0.065   skeletal muscle receptor tyrosine kinase 
PXDNL                 0.063   peroxidasin homolog-like 
DCC                   0.061   deleted in colorectal carcinoma 
HMCN2                 0.061   PREDICTED: hemicentin 2 
FSTL4                 0.061   follistatin-like 4 
HMCN2                 0.061   PREDICTED: hemicentin 2 
HMCN2                 0.061   PREDICTED: hemicentin 2 
SIGLEC8               0.061   sialic acid binding Ig-like lectin 8 
HMCN1                 0.059   hemicentin 1 
KDR                   0.057   kinase insert domain receptor precursor 
CNTN3                 0.057   contactin 3 
FLJ20674              0.057   hypothetical protein FLJ20674 
NCAM2                 0.057   neural cell adhesion molecule 2 precursor 
ROBO2                 0.055   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.055   roundabout, axon guidance receptor, homolog 2 isofor...
TTN                   0.055   titin isoform N2-A 
SIGLEC12              0.055   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC12              0.055   sialic acid binding immunoglobulin-like lectin-like ...
HSPG2                 0.051   heparan sulfate proteoglycan 2 
PTK7                  0.051   PTK7 protein tyrosine kinase 7 isoform a precursor [...
PTK7                  0.051   PTK7 protein tyrosine kinase 7 isoform d precursor [...
PTK7                  0.051   PTK7 protein tyrosine kinase 7 isoform b precursor [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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