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Search of human proteins with 5174465
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5174465 heparan sulfate D-glucosaminyl 3-O-sulfotransferase
3A1 [Homo sapiens]
(406 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5174465 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3... 830 0.0
gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3... 544 e-155
gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase... 440 e-123
gi|116089312 heparan sulfate (glucosamine) 3-O-sulfotransferase ... 428 e-120
gi|5174463 heparan sulfate D-glucosaminyl 3-O-sulfotransferase ... 420 e-117
gi|45267824 heparan sulfate (glucosamine) 3-O-sulfotransferase 5... 244 8e-65
gi|4826764 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1... 226 4e-59
gi|4758766 N-deacetylase/N-sulfotransferase (heparan glucosaminy... 128 1e-29
gi|12007650 heparan sulfate N-deacetylase/N-sulfotransferase 4 [... 124 2e-28
gi|4505353 heparan glucosaminyl N-deacetylase/N-sulfotransferase... 122 8e-28
gi|4505351 N-deacetylase/N-sulfotransferase (heparan glucosaminy... 120 3e-27
gi|45505173 B cell RAG associated protein [Homo sapiens] 52 1e-06
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 41 0.002
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 36 0.055
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ... 36 0.055
gi|5032105 small optic lobes [Homo sapiens] 36 0.055
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 35 0.12
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 35 0.16
gi|226437602 NK1 homeobox 2 [Homo sapiens] 34 0.21
gi|39812378 RAN binding protein 9 [Homo sapiens] 34 0.21
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 34 0.21
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 34 0.21
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 34 0.21
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 34 0.21
gi|23238228 chondroitin 6-sulfotransferase 7 [Homo sapiens] 34 0.21
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 34 0.21
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 34 0.21
gi|28830308 sulfotransferase family, cytosolic, 1C, member 2 [Ho... 34 0.21
gi|145580586 kintoun isoform 2 [Homo sapiens] 34 0.27
gi|145580588 kintoun isoform 1 [Homo sapiens] 34 0.27
>gi|5174465 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A1
[Homo sapiens]
Length = 406
Score = 830 bits (2143), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MAPPGPASALSTSAEPLSRSIFRKFLLMLCSLLTSLYVFYCLAERCQTLSGPVVGLSGGG 60
MAPPGPASALSTSAEPLSRSIFRKFLLMLCSLLTSLYVFYCLAERCQTLSGPVVGLSGGG
Sbjct: 1 MAPPGPASALSTSAEPLSRSIFRKFLLMLCSLLTSLYVFYCLAERCQTLSGPVVGLSGGG 60
Query: 61 EEAGAPGGGVLAGGPRELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEEAAWEEESPGL 120
EEAGAPGGGVLAGGPRELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEEAAWEEESPGL
Sbjct: 61 EEAGAPGGGVLAGGPRELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEEAAWEEESPGL 120
Query: 121 SGGPGGSGAGSTVAEAPPGTLALLLDEGSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRA 180
SGGPGGSGAGSTVAEAPPGTLALLLDEGSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRA
Sbjct: 121 SGGPGGSGAGSTVAEAPPGTLALLLDEGSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRA 180
Query: 181 VGAEPHFFDRSYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIV 240
VGAEPHFFDRSYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIV
Sbjct: 181 VGAEPHFFDRSYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIV 240
Query: 241 VVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLR 300
VVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLR
Sbjct: 241 VVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLR 300
Query: 301 HFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSR 360
HFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSR
Sbjct: 301 HFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSR 360
Query: 361 PHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTGHDFGWDG 406
PHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTGHDFGWDG
Sbjct: 361 PHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTGHDFGWDG 406
>gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3B1
[Homo sapiens]
Length = 390
Score = 544 bits (1401), Expect = e-155
Identities = 291/385 (75%), Positives = 299/385 (77%), Gaps = 27/385 (7%)
Query: 23 RKFLLMLCSLLTSLYVF-YCLAERCQTLSGPVVGLSGGGEEAGAPGGGVLAGGPRELAVW 81
RK L+ L LY+F Y A C G + L G G A A P LA
Sbjct: 31 RKLALLFAMLCVWLYMFLYSCAGSCAAAPGLL--LLGSGSRA--------AHDPPALATA 80
Query: 82 PAAAQRKRLLQLPQWRRRRPPA-PRDDGEEAAWEEESPGLSGGPGGSGAGSTVAEAPPGT 140
P P+ R PPA P G+E A SP V ++P
Sbjct: 81 PDGTP-------PRLPFRAPPATPLASGKEMAEGAASP--------EEQSPEVPDSPSPI 125
Query: 141 LALLLDEGSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYR 200
+ GSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYR
Sbjct: 126 SSFFSGSGSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYR 185
Query: 201 DLMPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKR 260
DLMPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKR
Sbjct: 186 DLMPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKR 245
Query: 261 PDIPTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPA 320
PDIPTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPA
Sbjct: 246 PDIPTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPA 305
Query: 321 GELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVV 380
GELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVV
Sbjct: 306 GELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVV 365
Query: 381 RRLREFYRPFNLKFYQMTGHDFGWD 405
RRLREFYRPFNLKFYQMTGHDFGWD
Sbjct: 366 RRLREFYRPFNLKFYQMTGHDFGWD 390
>gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4
[Homo sapiens]
Length = 456
Score = 440 bits (1131), Expect = e-123
Identities = 222/347 (63%), Positives = 260/347 (74%), Gaps = 23/347 (6%)
Query: 64 GAPGGGVLAGGPRELAVW---PAAAQRKRLLQ--LPQWRRRRPPAPRDDGEEAAWEEESP 118
G G G+ +GG W P A Q LP+ R+ E + +E+
Sbjct: 122 GTDGWGLPSGGGGAQDAWLRTPLAPSEMITAQSALPE---------REAQESSTTDEDLA 172
Query: 119 GLSGGPGGSGAGSTVAEAPPGTLALLLDEGSKQLPQAIIIGVKKGGTRALLEFLRVHPDV 178
G G S G V+ D G K+LPQA+IIGVKKGGTRALLE +RVHPDV
Sbjct: 173 GRRAANGSSERGGAVSTP---------DYGEKKLPQALIIGVKKGGTRALLEAIRVHPDV 223
Query: 179 RAVGAEPHFFDRSYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKL 238
RAVG EPHFFDR+Y+KGL WYR++MP+TLDGQITMEKTPSYFVT EAP RI +M+KD KL
Sbjct: 224 RAVGVEPHFFDRNYEKGLEWYRNVMPKTLDGQITMEKTPSYFVTNEAPKRIHSMAKDIKL 283
Query: 239 IVVVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHW 298
IVVVR+PVTRAISDYTQTLSK+P+IPTFE L FKNRT GLID SWSAI+IGIYA HLE+W
Sbjct: 284 IVVVRNPVTRAISDYTQTLSKKPEIPTFEVLAFKNRTLGLIDASWSAIRIGIYALHLENW 343
Query: 299 LRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGS 358
L++FP+ Q+LFVSGERLI DPAGE+ +VQDFLGLKR++T+KHFYFNKTKGFPCLKK E S
Sbjct: 344 LQYFPLSQILFVSGERLIVDPAGEMAKVQDFLGLKRVVTEKHFYFNKTKGFPCLKKPEDS 403
Query: 359 SRPHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTGHDFGWD 405
S P CLGK+KGRTHP ID +V+ RLR+FY+PFNL FYQMTG DF W+
Sbjct: 404 SAPRCLGKSKGRTHPRIDPDVIHRLRKFYKPFNLMFYQMTGQDFQWE 450
>gi|116089312 heparan sulfate (glucosamine) 3-O-sulfotransferase 6
[Homo sapiens]
Length = 311
Score = 428 bits (1100), Expect = e-120
Identities = 205/305 (67%), Positives = 241/305 (79%), Gaps = 19/305 (6%)
Query: 100 RPPAPRDDGEEAAWEEESPGLSGGPGGSGAGSTVAEAPPGTLALLLDEGSKQLPQAIIIG 159
R PAP E + PG G P SG G ++ PQA+I+G
Sbjct: 25 RAPAPAPAPSEPSSSVHRPGAPGLPLASGPGR------------------RRFPQALIVG 66
Query: 160 VKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDLMPRTLDGQITMEKTPSY 219
VKKGGTRALLEFLR+HPDVRA+G+EPHFFDR Y++GLAWYR LMPRTLDGQITMEKTPSY
Sbjct: 67 VKKGGTRALLEFLRLHPDVRALGSEPHFFDRCYERGLAWYRSLMPRTLDGQITMEKTPSY 126
Query: 220 FVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLI 279
FVTREAP RI AMS DTKLIVVVR+PVTRAISDY QTLSK P +P+F +L F++ G +
Sbjct: 127 FVTREAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQTLSKTPGLPSFRALAFRHGL-GPV 185
Query: 280 DTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDK 339
DT+WSA++IG+YA+HL+HWLR+FP+ LFVSGERL+SDPAGE+GRVQDFLGLKR++TDK
Sbjct: 186 DTAWSAVRIGLYAQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVGRVQDFLGLKRVVTDK 245
Query: 340 HFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTG 399
HFYFN TKGFPCLKKA+G SRP CLGK+KGR HP + + +VRRL+EFYRPFN +FYQMTG
Sbjct: 246 HFYFNATKGFPCLKKAQGGSRPRCLGKSKGRPHPRVPQALVRRLQEFYRPFNRRFYQMTG 305
Query: 400 HDFGW 404
DFGW
Sbjct: 306 QDFGW 310
>gi|5174463 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2
[Homo sapiens]
Length = 367
Score = 420 bits (1080), Expect = e-117
Identities = 193/258 (74%), Positives = 229/258 (88%)
Query: 148 GSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDLMPRTL 207
G+K+LPQA+I+GVKKGGTRA+LEF+RVHPDVRA+G EPHFFDR+Y +GL WYR LMPRTL
Sbjct: 110 GTKRLPQALIVGVKKGGTRAVLEFIRVHPDVRALGTEPHFFDRNYGRGLDWYRSLMPRTL 169
Query: 208 DGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPTFE 267
+ QIT+EKTPSYFVT+EAP RI MS+DTKLIVVVR+PVTRAISDYTQTLSK+PDIPTFE
Sbjct: 170 ESQITLEKTPSYFVTQEAPRRIFNMSRDTKLIVVVRNPVTRAISDYTQTLSKKPDIPTFE 229
Query: 268 SLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQ 327
L+F+NRT GL+D SW+AI+IG+Y HLE WL++FP+ Q+ FVSGERLI+DPAGE+GRVQ
Sbjct: 230 GLSFRNRTLGLVDVSWNAIRIGMYVLHLESWLQYFPLAQIHFVSGERLITDPAGEMGRVQ 289
Query: 328 DFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFY 387
DFLG+KR ITDKHFYFNKTKGFPCLKK E S P CLGK+KGRTH +ID EV+ +LREFY
Sbjct: 290 DFLGIKRFITDKHFYFNKTKGFPCLKKTESSLLPRCLGKSKGRTHVQIDPEVIDQLREFY 349
Query: 388 RPFNLKFYQMTGHDFGWD 405
RP+N+KFY+ G DF W+
Sbjct: 350 RPYNIKFYETVGQDFRWE 367
>gi|45267824 heparan sulfate (glucosamine) 3-O-sulfotransferase 5
[Homo sapiens]
Length = 346
Score = 244 bits (624), Expect = 8e-65
Identities = 127/261 (48%), Positives = 167/261 (63%), Gaps = 9/261 (3%)
Query: 150 KQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDR--SYDKGLAWYRDLMPRTL 207
+QLP+AIIIGV+KGGTRALLE L +HP V E HFFD +Y KG+ WYR MP +
Sbjct: 88 QQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDNDENYGKGIEWYRKKMPFSY 147
Query: 208 DGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLS----KRPDI 263
QIT+EK+P+YF+T E P RI M+ KL+++VR+P TRAISDYTQ L K
Sbjct: 148 PQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPTTRAISDYTQVLEGKERKNKTY 207
Query: 264 PTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGEL 323
FE L T ++T + A++ IY KHLE WL++FPI Q V G+RLI++P EL
Sbjct: 208 YKFEKLAIDPNTCE-VNTKYKAVRTSIYTKHLERWLKYFPIEQFHVVDGDRLITEPLPEL 266
Query: 324 GRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRL 383
V+ FL L I+ + YFN T+GF CL+ ++ CL +KGR HPE+D V+ +L
Sbjct: 267 QLVEKFLNLPPRISQYNLYFNATRGFYCLRFNIIFNK--CLAGSKGRIHPEVDPSVITKL 324
Query: 384 REFYRPFNLKFYQMTGHDFGW 404
R+F+ PFN KFYQ+TG W
Sbjct: 325 RKFFHPFNQKFYQITGRTLNW 345
>gi|4826764 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1
precursor [Homo sapiens]
Length = 307
Score = 226 bits (575), Expect = 4e-59
Identities = 112/262 (42%), Positives = 164/262 (62%), Gaps = 12/262 (4%)
Query: 149 SKQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFD--RSYDKGLAWYRDLMPRT 206
++QLPQ IIIGV+KGGTRALLE L +HPDV A E HFFD Y GL WY MP +
Sbjct: 51 AQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSHGLGWYLSQMPFS 110
Query: 207 LDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQT----LSKRPD 262
Q+T+EKTP+YF + + P R+ +M+ +L++++RDP R +SDYTQ + K
Sbjct: 111 WPHQLTVEKTPAYFTSPKVPERVYSMNPSIRLLLILRDPSERVLSDYTQVFYNHMQKHKP 170
Query: 263 IPTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGE 322
P+ E ++ G ++ + A+ +Y H+++WLR FP+R + V G+RLI DP E
Sbjct: 171 YPSIEEFLVRD---GRLNVDYKALNRSLYHVHMQNWLRFFPLRHIHIVDGDRLIRDPFPE 227
Query: 323 LGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRR 382
+ +V+ FL L I +FYFNKTKGF CL+ S R CL ++KGR HP++D +++ +
Sbjct: 228 IQKVERFLKLSPQINASNFYFNKTKGFYCLR---DSGRDRCLHESKGRAHPQVDPKLLNK 284
Query: 383 LREFYRPFNLKFYQMTGHDFGW 404
L E++ N KF+++ G F W
Sbjct: 285 LHEYFHEPNKKFFELVGRTFDW 306
>gi|4758766 N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
3 [Homo sapiens]
Length = 873
Score = 128 bits (321), Expect = 1e-29
Identities = 86/263 (32%), Positives = 135/263 (51%), Gaps = 19/263 (7%)
Query: 151 QLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEP------HFFDRS-YDKGLAWYRDL- 202
+LP+ ++IG +K GT AL FL +HP + + P FF+R+ Y +G+ WY D
Sbjct: 594 RLPKFLVIGPQKTGTTALYLFLVMHPSILSNSPSPKTFEEVQFFNRNNYHRGIDWYMDFF 653
Query: 203 -MPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRP 261
+P + EK+ +YF + EAP R +++ K+I ++ DP RA S Y S
Sbjct: 654 PVPSNVTTDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSDRAYSWYQHQRSHE- 712
Query: 262 DIPTFESLTFKNRTAG------LIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERL 315
D + ++ +AG L + G YA H+E WL +FP Q+L + G++L
Sbjct: 713 DPAALKFSFYEVISAGPRAPSELRALQKRCLVPGWYASHIERWLVYFPPFQLLIIDGQQL 772
Query: 316 ISDPAGELGRVQDFLG-LKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPE 374
+DPA + VQ FLG L + F+ KGF C EG ++ CLGK+KGR +P
Sbjct: 773 RTDPATVMDEVQKFLGVLPHYNYSEALTFDSHKGFWCQLLEEGKTK--CLGKSKGRKYPP 830
Query: 375 IDREVVRRLREFYRPFNLKFYQM 397
+D + L +YR N++ ++
Sbjct: 831 MDSDSRTFLSSYYRDHNVELSKL 853
>gi|12007650 heparan sulfate N-deacetylase/N-sulfotransferase 4
[Homo sapiens]
Length = 872
Score = 124 bits (310), Expect = 2e-28
Identities = 83/261 (31%), Positives = 129/261 (49%), Gaps = 17/261 (6%)
Query: 152 LPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDR-------SYDKGLAWYRDLMP 204
LP+ ++IG +K GT AL FL +HP + + P F+ +Y KG+ WY D P
Sbjct: 594 LPKFLVIGPQKTGTTALYLFLLMHPSIISNLPSPKTFEEVQFFNGNNYHKGIDWYMDFFP 653
Query: 205 RTLD--GQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPD 262
+ EK+ +YF + EAP R +++ K+I ++ DP RA S Y S
Sbjct: 654 TPSNTTSDFLFEKSANYFHSEEAPRRAASLVPKAKIITILIDPSDRAYSWYQHQRSHEDP 713
Query: 263 IPT----FESLTFKNRTAGLIDTSWSAIQI-GIYAKHLEHWLRHFPIRQMLFVSGERLIS 317
+E ++ + + T + G YA H+E WL +F Q+L + G++L S
Sbjct: 714 AALRFNFYEVISTGHWAPSDLKTLQRRCLVPGWYAVHIERWLTYFATSQLLIIDGQQLRS 773
Query: 318 DPAGELGRVQDFLGL-KRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEID 376
DPA + VQ FLG+ R + F+ KGF C G ++ CLGK+KGR +P +D
Sbjct: 774 DPATVMDEVQKFLGVTPRYNYSEALTFDPQKGFWCQLLEGGKTK--CLGKSKGRKYPPMD 831
Query: 377 REVVRRLREFYRPFNLKFYQM 397
E L +YR N++ ++
Sbjct: 832 PESRTFLSNYYRDHNVELSKL 852
>gi|4505353 heparan glucosaminyl N-deacetylase/N-sulfotransferase 2
[Homo sapiens]
Length = 883
Score = 122 bits (305), Expect = 8e-28
Identities = 77/262 (29%), Positives = 134/262 (51%), Gaps = 17/262 (6%)
Query: 151 QLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDR-------SYDKGLAWYRDL- 202
+LP+ +I+G +K GT A+ FL +HP V + P F+ +Y KG+ WY D
Sbjct: 602 RLPKFLIVGPQKTGTTAIHFFLSLHPAVTSSFPSPSTFEEIQFFNSPNYHKGIDWYMDFF 661
Query: 203 -MPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRP 261
+P EK+ +YF + P R +A+ K+I V+ +P RA S Y +
Sbjct: 662 PVPSNASTDFLFEKSATYFDSEVVPRRGAALLPRAKIITVLTNPADRAYSWYQHQRAHGD 721
Query: 262 DIPT----FESLTFKNRTAGLIDTSWSAIQI-GIYAKHLEHWLRHFPIRQMLFVSGERLI 316
+ ++ ++ ++T + + + + G Y+ HL+ WL ++P Q+L V G+ L
Sbjct: 722 PVALNYTFYQVISASSQTPLALRSLQNRCLVPGYYSTHLQRWLTYYPSGQLLIVDGQELR 781
Query: 317 SDPAGELGRVQDFLGLKRIIT-DKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEI 375
++PA + +Q FLG+ + + F+ KGF C G +R CLG++KGR +P++
Sbjct: 782 TNPAASMESIQKFLGITPFLNYTRTLRFDDDKGFWCQGLEGGKTR--CLGRSKGRRYPDM 839
Query: 376 DREVVRRLREFYRPFNLKFYQM 397
D E L +F+R NL+ ++
Sbjct: 840 DTESRLFLTDFFRNHNLELSKL 861
>gi|4505351 N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
1 [Homo sapiens]
Length = 882
Score = 120 bits (300), Expect = 3e-27
Identities = 83/264 (31%), Positives = 130/264 (49%), Gaps = 21/264 (7%)
Query: 151 QLPQAIIIGVKKGGTRALLEFLRVHPDVRA------VGAEPHFFD-RSYDKGLAWYRDL- 202
+ P+ +IIG +K GT AL FL +HPD+ + E FF+ +Y KG+ WY +
Sbjct: 603 RFPKLLIIGPQKTGTTALYLFLGMHPDLSSNYPSSETFEEIQFFNGHNYHKGIDWYMEFF 662
Query: 203 -MPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRP 261
+P EK+ +YF + AP R +A+ K++ ++ +P RA S Y +
Sbjct: 663 PIPSNTTSDFYFEKSANYFDSEVAPRRAAALLPKAKVLTILINPADRAYSWYQH--QRAH 720
Query: 262 DIPTFESLTFKNRTAGLIDTSWSAIQI-------GIYAKHLEHWLRHFPIRQMLFVSGER 314
D P TF D S + G YA H+E WL + Q+L + G+
Sbjct: 721 DDPVALKYTFHEVITAGSDASSKLRALQNRCLVPGWYATHIERWLSAYHANQILVLDGKL 780
Query: 315 LISDPAGELGRVQDFLGLKRIIT-DKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHP 373
L ++PA + VQ FLG+ I K F+ KGF C G ++ CLGK+KGR +P
Sbjct: 781 LRTEPAKVMDMVQKFLGVTNTIDYHKTLAFDPKKGFWCQLLEGGKTK--CLGKSKGRKYP 838
Query: 374 EIDREVVRRLREFYRPFNLKFYQM 397
E+D + L+++YR N++ ++
Sbjct: 839 EMDLDSRAFLKDYYRDHNIELSKL 862
>gi|45505173 B cell RAG associated protein [Homo sapiens]
Length = 561
Score = 52.0 bits (123), Expect = 1e-06
Identities = 56/197 (28%), Positives = 85/197 (43%), Gaps = 37/197 (18%)
Query: 229 ISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPTF-ESLT-----FKNRTAGLIDTS 282
I A + +LIV++RDPV R SDY S F E +T F+N ++D S
Sbjct: 378 IHAFQPNARLIVMLRDPVERLYSDYLYFASSNKSADDFHEKVTEALQLFEN---CMLDYS 434
Query: 283 WSA--------------IQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQD 328
A +Q+G+YA +L WL F +Q L + E S+ + +V
Sbjct: 435 LRACVYNNTLNNAMPVRLQVGLYAVYLLDWLSVFDKQQFLILRLEDHASNVKYTMHKVFQ 494
Query: 329 FLGLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYR 388
FL L + + K+ A + RP + G P I +++ LR+FYR
Sbjct: 495 FLNLGPLSEKQEALMTKS-------PASNARRPE--DRNLGPMWP-ITQKI---LRDFYR 541
Query: 389 PFNLKFYQMTGHD-FGW 404
PFN + Q+ + F W
Sbjct: 542 PFNARLAQVLADEAFAW 558
Score = 33.1 bits (74), Expect = 0.46
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 152 LPQAIIIGVKKGGTRALLEFLRVHPDVR-AVGAEPHFFDR 190
LP IIG K GT L + LR+HP+V+ + EPH++ R
Sbjct: 253 LPHFYIIGQPKCGTTDLYDRLRLHPEVKFSAIKEPHWWTR 292
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 41.2 bits (95), Expect = 0.002
Identities = 38/108 (35%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 53 VVGLSGGGEEAGAPGG--GVLAGGPRELAVWPAAAQRKRLLQLPQWRR---RRPPAPRDD 107
VVGL G E GAPGG G L G P A+ R L P+ + R P D
Sbjct: 2302 VVGLPGAKGEKGAPGGLAGDLVGEP--------GAKGDRGLPGPRGEKGEAGRAGEPGDP 2353
Query: 108 GEEAAWEEESPGLSGGPGGSGAGSTVAEAPPGTLALLLDEGSKQLPQA 155
GE+ ++ +PG G G G G + PPG + D G LP A
Sbjct: 2354 GEDG--QKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGA 2399
Score = 34.3 bits (77), Expect = 0.21
Identities = 35/102 (34%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 55 GLSGGGEEAGAPGGGVLAGGPRELAV----WPAAAQRKRLLQLPQWRRR---RPPAPRDD 107
G G EAG PG LAG E+ + A K L P+ R +P D
Sbjct: 2638 GEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQ 2697
Query: 108 GEEAAWEEESPGLSGGPGGSG-AGSTVAEAPPGTLALLLDEG 148
GE+ E +PG+ G PG SG GS PPG++ EG
Sbjct: 2698 GEKG--ERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEG 2737
Score = 29.3 bits (64), Expect = 6.7
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 55 GLSGGGEEAGAPGGGVLAGGPRELAVWPAAAQRKRLLQLPQWRRRRPPA-------PRDD 107
GL+G + G PG AGG E +R + + R PP P
Sbjct: 2031 GLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPP 2090
Query: 108 GEEAAWEEESPGLSGGPGGSGAGSTVAEAPPGTLALLLDEGSK 150
G + + +E PGLSG G G A+ PG+ D+G K
Sbjct: 2091 GPKVSVDEPGPGLSGEQGPPGLKG--AKGEPGSNG---DQGPK 2128
Score = 28.9 bits (63), Expect = 8.7
Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 20/99 (20%)
Query: 55 GLSGGGEEAGAPG---GGVLAGGPRELAVWPAAAQRKRLLQLPQWRRRRPPA--PRDDGE 109
G G E G PG GG+ G P L LP + P P GE
Sbjct: 1400 GDKGDRGERGPPGPGEGGIAPGEPG-------------LPGLPGSPGPQGPVGPPGKKGE 1446
Query: 110 EAAWEEESPGLSGGPGGSGAGSTVAEAPPGTLALLLDEG 148
+ E+ +PGL G PG G PPG + D G
Sbjct: 1447 KGDSEDGAPGLPGQPGSPGEQG--PRGPPGAIGPKGDRG 1483
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 36.2 bits (82), Expect = 0.055
Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 53 VVGLSGGGEEAGAPGGGVLAGGPRELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEEAA 112
VVGL G E G PG +G P + P+ A +R P P + G E A
Sbjct: 960 VVGLPGQRGERGFPGLPGPSGEPGKQG--PSGASGERGPPGPMGPPGLAGPPGESGREGA 1017
Query: 113 -WEEESPGLSGGPGGSG-AGSTVAEAPPG 139
E SPG G PG G G T PPG
Sbjct: 1018 PGAEGSPGRDGSPGAKGDRGETGPAGPPG 1046
Score = 29.3 bits (64), Expect = 6.7
Identities = 31/89 (34%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 55 GLSGGGEEAGAPGGGVLAGGP----RELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEE 110
G G AG PG AG P A A Q R + PQ R P P G
Sbjct: 323 GNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAG-- 380
Query: 111 AAWEEESPGLSGGPGGSGAGST--VAEAP 137
AA +PG G PG GA +A AP
Sbjct: 381 AAGPAGNPGADGQPGAKGANGAPGIAGAP 409
>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
Length = 800
Score = 36.2 bits (82), Expect = 0.055
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 30/176 (17%)
Query: 2 APPGPASALSTSAEPLSRSIFRKFLLMLCSLLTSLY---------VFYCLAERCQTLSGP 52
A GP L+ S+ P ++L SL TSL + + R ++ S P
Sbjct: 207 AGTGPPFVLTQSSRPTD--------MLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPP 258
Query: 53 VVGLSGGGEEAGAPGGGVLAGGPRELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEEAA 112
++G S G +GAP ++ L + P A RL P+ R AP +G A
Sbjct: 259 LLGSSLGCPRSGAPRMFIVYHVAAGLPILPPAGHTLRLP--PRSPPRLGRAPHFNGPPAH 316
Query: 113 WEEESPGLSGGPGGSGAGSTVAEAPPGTLALLLDEGSKQLPQAIIIGVKKGGTRAL 168
PG ++ PP L L ++ G+ + Q++ GVK+ G + L
Sbjct: 317 -----------PGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGL 361
>gi|5032105 small optic lobes [Homo sapiens]
Length = 1086
Score = 36.2 bits (82), Expect = 0.055
Identities = 33/103 (32%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 50 SGPVVGLSGGGEEAGAPGGGVLAGGPRELAVWPAAAQRKRLLQ---LPQWRRRRPPAPRD 106
+ P GL G G EA P E P + LQ +P+ RR PP +
Sbjct: 198 AAPPPGLPGEGAEANPPATSQGPAAEPEPPRVPPFSPFSSTLQNNPVPRSRREVPPQLQP 257
Query: 107 DGEEAAWEEESPGLSGGPGGSG--AGSTVAEAPPGTLALLLDE 147
EAA S G G P GSG S +AE G +L+E
Sbjct: 258 PVPEAAQPSPSAGCRGAPQGSGWAGASRLAELLSGKRLSVLEE 300
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 35.0 bits (79), Expect = 0.12
Identities = 36/109 (33%), Positives = 41/109 (37%), Gaps = 24/109 (22%)
Query: 51 GPVVGLSGGGEEAGAPGGGVLA----------GGPRELAVWP-AAAQRKRLLQLPQWRRR 99
GP V GGG G GGG+ A G R LA P A R+R Q PQW R
Sbjct: 102 GPQVAARGGGR--GWEGGGLGARRAVTAARRGGASRPLAGEPWREAARRRPQQCPQWGRA 159
Query: 100 RP------PAPRDDGEEAAWEEESPGL-----SGGPGGSGAGSTVAEAP 137
R +PR +PGL G +G G AE P
Sbjct: 160 RESRSAALASPRVSNAPTTPASRNPGLRAQERQSGRRAAGGGGARAEPP 208
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 34.7 bits (78), Expect = 0.16
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 55 GLSGGGEEAGAPGGGVLAGGPRELAVWPAAAQRKRLLQLPQWRR--RRPPAPRDDGEEAA 112
G SGGG G P GG GG + W + WR + AP+ DG
Sbjct: 400 GGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNF-SWRNECNQCKAPKPDG---- 454
Query: 113 WEEESPGLSGGPGGSGAGSTVAE 135
PG GGPGGS G +
Sbjct: 455 -----PG--GGPGGSHMGGNYGD 470
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 34.3 bits (77), Expect = 0.21
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 95 QWRRRRPPAPRDDGEEAAWEEESPGLSGGPGGSGAGSTVAEAPPGTLAL 143
+W+++ P A D + PG +GG GG G+G + PPGT AL
Sbjct: 217 KWKKQNPGA--DGAAQVGGGAPQPGAAGGGGGGGSGGS--PGPPGTGAL 261
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 56 LSGGGEEAGAPGGGV----LAGGPRELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEEA 111
+S G AG+PGGG L L + P P PP P A
Sbjct: 41 VSAGSSPAGSPGGGAGGEGLGAAAAALLLHPPPPPPPATAAPPP-PPPPPPPPASAAAPA 99
Query: 112 AWEEESPGLSGGPGGSGAGSTVAEAPPGTLALLLDEGSKQL 152
+ PGL+ GPG +G T A + A G L
Sbjct: 100 SGPPAPPGLAAGPGPAGGAPTPALVAGSSAAAPFPHGDSAL 140
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 34.3 bits (77), Expect = 0.21
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 95 QWRRRRPPAPRDDGEEAAWEEESPGLSGGPGGSGAGSTVAEAPPGTLAL 143
+W+++ P A D + PG +GG GG G+G + PPGT AL
Sbjct: 239 KWKKQNPGA--DGAAQVGGGAPQPGAAGGGGGGGSGGS--PGPPGTGAL 283
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 34.3 bits (77), Expect = 0.21
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 95 QWRRRRPPAPRDDGEEAAWEEESPGLSGGPGGSGAGSTVAEAPPGTLAL 143
+W+++ P A D + PG +GG GG G+G + PPGT AL
Sbjct: 239 KWKKQNPGA--DGAAQVGGGAPQPGAAGGGGGGGSGGS--PGPPGTGAL 283
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 34.3 bits (77), Expect = 0.21
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 95 QWRRRRPPAPRDDGEEAAWEEESPGLSGGPGGSGAGSTVAEAPPGTLAL 143
+W+++ P A D + PG +GG GG G+G + PPGT AL
Sbjct: 239 KWKKQNPGA--DGAAQVGGGAPQPGAAGGGGGGGSGGS--PGPPGTGAL 283
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
Length = 1343
Score = 34.3 bits (77), Expect = 0.21
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 22/92 (23%)
Query: 50 SGPVVGLSGGGEEAGAPGGG------VLAGGPRELAVWPAAAQRKR-----LLQLPQWRR 98
SGP GGG G+ GGG + G ++L V +AAQ+ R LLQ P+
Sbjct: 1047 SGP-----GGGSGGGSGGGGGGQPPPLQRGKSQQLTV--SAAQKPRPSSGNLLQSPE-PS 1098
Query: 99 RRPPAPRDDGEEAAWEEESPGLSGGPGGSGAG 130
P PR +++ +E S G SGG GG G G
Sbjct: 1099 YGPARPR---QQSLSKEGSIGGSGGSGGGGGG 1127
>gi|23238228 chondroitin 6-sulfotransferase 7 [Homo sapiens]
Length = 486
Score = 34.3 bits (77), Expect = 0.21
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 290 IYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKTKGF 349
++A+ WLR R+ L + E L+ P +L R+ F GL+ + F N T+G
Sbjct: 357 LFARGAPAWLR----RRYLRLRYEDLVRQPRAQLRRLLRFSGLRALAALDAFALNMTRG- 411
Query: 350 PCLKKAEGSSRPHCLGKTKGRT-----HPEIDREVVRRLREFYRP-FNLKFYQMTGHD 401
A G+ RP L R + RE VR++ P L Y +G +
Sbjct: 412 ----AAYGADRPFHLSARDAREAVHAWRERLSREQVRQVEAACAPAMRLLAYPRSGEE 465
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 34.3 bits (77), Expect = 0.21
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 74 GPRELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEEAAWEEESPGLSGGP---GGSGAG 130
GP+E A P R+R L P P P G + EEE PG G P G SG G
Sbjct: 812 GPKEGATGP----RRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSRGSSGEG 867
Query: 131 STVAE 135
AE
Sbjct: 868 LPFAE 872
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 34.3 bits (77), Expect = 0.21
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 74 GPRELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEEAAWEEESPGLSGGP---GGSGAG 130
GP+E A P R+R L P P P G + EEE PG G P G SG G
Sbjct: 894 GPKEGATGP----RRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSRGSSGEG 949
Query: 131 STVAE 135
AE
Sbjct: 950 LPFAE 954
>gi|28830308 sulfotransferase family, cytosolic, 1C, member 2 [Homo
sapiens]
Length = 302
Score = 34.3 bits (77), Expect = 0.21
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 230 SAMSKDTKLIVVVRDPVTRAISDY-TQTLSKRPDIPTFESLTFKNRTAGLIDTSWSAIQI 288
S + K+ K+I V R+P +S Y Q ++K P F+ AG + W
Sbjct: 124 SLLEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEEYFETFLAGKV--CW----- 176
Query: 289 GIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLK 333
G + +H++ W ++L++ E + +P E+ ++ +F+G K
Sbjct: 177 GSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKK 221
>gi|145580586 kintoun isoform 2 [Homo sapiens]
Length = 789
Score = 33.9 bits (76), Expect = 0.27
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 63 AGAPGGGVLAGGPRELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEEA-----AWEEES 117
AGA G GV G E+A PAAA +R+ + P +D A + EE S
Sbjct: 405 AGAAGSGVTTLGDPEVAPPPAAAGEERVPK---------PGEQDLSRHAGSPPGSVEEPS 455
Query: 118 PGLSGGPGGSGA 129
PG PGG G+
Sbjct: 456 PGGENSPGGGGS 467
>gi|145580588 kintoun isoform 1 [Homo sapiens]
Length = 837
Score = 33.9 bits (76), Expect = 0.27
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 63 AGAPGGGVLAGGPRELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEEA-----AWEEES 117
AGA G GV G E+A PAAA +R+ + P +D A + EE S
Sbjct: 405 AGAAGSGVTTLGDPEVAPPPAAAGEERVPK---------PGEQDLSRHAGSPPGSVEEPS 455
Query: 118 PGLSGGPGGSGA 129
PG PGG G+
Sbjct: 456 PGGENSPGGGGS 467
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,394,684
Number of Sequences: 37866
Number of extensions: 982375
Number of successful extensions: 5745
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 5363
Number of HSP's gapped (non-prelim): 466
length of query: 406
length of database: 18,247,518
effective HSP length: 105
effective length of query: 301
effective length of database: 14,271,588
effective search space: 4295747988
effective search space used: 4295747988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.