Guide to the Human Genome
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Search of human proteins with 51243065

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
sapiens]
         (217 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ...   435   e-122
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]      70   2e-12
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]     66   3e-11
gi|187960109 RNA binding motif protein 28 [Homo sapiens]               64   1e-10
gi|4502847 cold inducible RNA binding protein [Homo sapiens]           63   2e-10
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]     59   4e-09
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]     59   4e-09
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]     59   4e-09
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]         59   4e-09
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]        58   7e-09
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa...    57   1e-08
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap...    57   1e-08
gi|62244004 modulator of estrogen induced transcription isoform ...    57   1e-08
gi|63176611 modulator of estrogen induced transcription isoform ...    57   1e-08
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ...    57   1e-08
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]     56   3e-08
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot...    56   3e-08
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-...    55   4e-08
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ...    55   4e-08
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]     55   5e-08
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]       55   6e-08
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]      55   6e-08
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]     54   8e-08
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]    54   1e-07
gi|13899354 RNA binding motif protein 4B [Homo sapiens]                53   2e-07
gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform...    53   2e-07
gi|93277122 RNA binding motif protein 4 [Homo sapiens]                 52   3e-07
gi|7661936 scaffold attachment factor B2 [Homo sapiens]                52   3e-07
gi|5803137 RNA binding motif protein 3 [Homo sapiens]                  52   3e-07
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa...    52   5e-07

>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
           sapiens]
          Length = 217

 Score =  435 bits (1119), Expect = e-122
 Identities = 217/217 (100%), Positives = 217/217 (100%)

Query: 1   MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60
           MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD
Sbjct: 1   MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60

Query: 61  KDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC 120
           KDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC
Sbjct: 61  KDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC 120

Query: 121 PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE 180
           PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE
Sbjct: 121 PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE 180

Query: 181 EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD 217
           EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD
Sbjct: 181 EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD 217


>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
          Length = 322

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 11/187 (5%)

Query: 12  VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
           +++  LP+ LT  D+  +FS+YG++V + +++DK T KSKG  F+ + D+ S        
Sbjct: 38  IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97

Query: 72  NNKQLFGRVIKASIAIDNGRA----AEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGE 127
           N  ++ GR I+    + N RA     E         +  C     S  LS +       +
Sbjct: 98  NGIKIKGRTIRVD-HVSNYRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSESSEDEKPTK 156

Query: 128 REPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQ----AIAFQQAKIEEEQK 183
           +    KKEKKKKKK  E E+   EV+  +     P   ++ +          +K  E  +
Sbjct: 157 KHKKDKKEKKKKKK--EKEKADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNSERAQ 214

Query: 184 KWKPSSG 190
           K +P  G
Sbjct: 215 KSEPREG 221


>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
          Length = 238

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 8/135 (5%)

Query: 9   KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 68
           ++ VYV NL       +L R FS YG +  V I      R   G AF+ F D   A++  
Sbjct: 10  ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64

Query: 69  RAINNKQLFGRVIKASIAIDNGRAAEFIR---RRNYFDKSKCYECGESGHLSYACPKNML 125
           R ++ K + G  ++  ++    R + F R   RR +    +CYECGE GH +Y C +   
Sbjct: 65  RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSR 124

Query: 126 GEREPPKKKEKKKKK 140
             R   + +   + +
Sbjct: 125 RRRSRSRSRSHSRSR 139


>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
          Length = 759

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 30/209 (14%)

Query: 5   LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
           +A  K+ + + NL F  + +DL  +F+++G V++V I +  D  K +G  F+ F +   A
Sbjct: 109 VADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDG-KMRGFGFVQFKNLLEA 167

Query: 65  QNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNM 124
               + +N K++ GR +    A+   +         Y D       GE            
Sbjct: 168 GKALKGMNMKEIKGRTVAVDWAVAKDK---------YKDTQSVSAIGE------------ 206

Query: 125 LGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEEEQKK 184
             E+    K ++  KKK  E EE++EE E  +D+ +D   D +     F     EEE  +
Sbjct: 207 --EKSHESKHQESVKKKGRE-EEDMEEEENDDDDDDDDEEDGV-----FDDEDEEEENIE 258

Query: 185 WKPSSGVPSTSDDSRRPRIKKSTYFSDEE 213
            K +  V       +RP   KS+  S+E+
Sbjct: 259 SKVTKPVQIQKRAVKRPAPAKSSDHSEED 287



 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 11  TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
           TV++ NL F     +L  +  ++G++  V I+   DT  SKG AF  F+ +++AQ C  A
Sbjct: 336 TVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLA 395

Query: 71  INNK------QLFGRVIKASIAIDNGRAAE 94
            + +      +L GR +K  +A+    AA+
Sbjct: 396 ASPENEAGGLKLDGRQLKVDLAVTRDEAAK 425



 Score = 37.4 bits (85), Expect = 0.010
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 22/132 (16%)

Query: 11  TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
           T++V  LP S  +  L  +FS+ G V +  ++ +K ++  +G  ++ F   +  Q   + 
Sbjct: 5   TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64

Query: 71  INNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGEREP 130
           I   +  G  I  ++A           ++   +K+K  E G++ +    CPK     +EP
Sbjct: 65  ITTFE--GCKINVTVA-----------KKKLRNKTK--EKGKNENSE--CPK-----KEP 102

Query: 131 PKKKEKKKKKKA 142
             KK K   KKA
Sbjct: 103 KAKKAKVADKKA 114


>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
          Length = 172

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 11/110 (10%)

Query: 5   LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
           +A  +  ++V  L F      L ++FSKYG++ +V ++KD++T++S+G  F+ F + D A
Sbjct: 1   MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query: 65  QNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESG 114
           ++   A+N K + GR I+   A   G++++        ++S+ Y  G +G
Sbjct: 61  KDAMMAMNGKSVDGRQIRVDQA---GKSSD--------NRSRGYRGGSAG 99


>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
          Length = 405

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 12  VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
           +YV +L F++T + L  IF  +GK+  + +MKD DT +SKG  FI F D + A+     +
Sbjct: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290

Query: 72  NNKQLFGRVIK 82
           N  +L GR ++
Sbjct: 291 NGFELAGRPMR 301



 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 11  TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
           TV+   L   +   DL   FS  GKV  V I+ D+++R+SKG+A++ F +  S       
Sbjct: 133 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP-LAIG 191

Query: 71  INNKQLFG--RVIKASIAIDNGRAA 93
           +  ++L G   +++AS A  N  AA
Sbjct: 192 LTGQRLLGVPIIVQASQAEKNRLAA 216


>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
          Length = 439

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 12  VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
           +YV +L F++T + L  IF  +GK+  + +MKD DT +SKG  FI F D + A+     +
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324

Query: 72  NNKQLFGRVIK 82
           N  +L GR ++
Sbjct: 325 NGFELAGRPMR 335



 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 11  TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
           TV+   L   +   DL   FS  GKV  V I+ D+++R+SKG+A++ F +  S       
Sbjct: 167 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP-LAIG 225

Query: 71  INNKQLFG--RVIKASIAIDNGRAA 93
           +  ++L G   +++AS A  N  AA
Sbjct: 226 LTGQRLLGVPIIVQASQAEKNRLAA 250


>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
          Length = 423

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 12  VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
           +YV +L F++T + L  IF  +GK+  + +MKD DT +SKG  FI F D + A+     +
Sbjct: 249 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 308

Query: 72  NNKQLFGRVIK 82
           N  +L GR ++
Sbjct: 309 NGFELAGRPMR 319



 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 11  TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
           TV+   L   +   DL   FS  GKV  V I+ D+++R+SKG+A++ F +  S       
Sbjct: 151 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP-LAIG 209

Query: 71  INNKQLFG--RVIKASIAIDNGRAA 93
           +  ++L G   +++AS A  N  AA
Sbjct: 210 LTGQRLLGVPIIVQASQAEKNRLAA 234


>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
          Length = 391

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
          +++  L        L  +F KYG++V+V +MKD++T KS+G AF+ F     A++  R +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query: 72 NNKQLFGRVIKASIA 86
          N K L G+ IK   A
Sbjct: 70 NGKSLDGKAIKVEQA 84


>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
          Length = 577

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 17/176 (9%)

Query: 8   SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
           S  +V+V N+P+  T   L  IFS+ G VV   ++ D++T K KG  F  + D+++A + 
Sbjct: 14  SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73

Query: 68  TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGE 127
            R +N ++  GR ++    +DN  + +        +K +    G    +  +     +  
Sbjct: 74  MRNLNGREFSGRALR----VDNAASEK--------NKEELKSLGTGAPVIESPYGETISP 121

Query: 128 REPPKKKEKKKKKKAPEPEEEIEE-----VEESEDEGEDPALDSLSQAIAFQQAKI 178
            + P+   K      PE   E+ +     V+ S  E  +  L +   A A  QA++
Sbjct: 122 EDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQV 177


>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
          sapiens]
          Length = 390

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 26/75 (34%), Positives = 43/75 (57%)

Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
          +++  L        L  +F KYG++V+V ++KD++T KS+G AF+ F     A++  R +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query: 72 NNKQLFGRVIKASIA 86
          N K L G+ IK   A
Sbjct: 70 NGKSLDGKAIKVEQA 84


>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
          sapiens]
          Length = 390

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 26/75 (34%), Positives = 43/75 (57%)

Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
          +++  L        L  +F KYG++V+V ++KD++T KS+G AF+ F     A++  R +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query: 72 NNKQLFGRVIKASIA 86
          N K L G+ IK   A
Sbjct: 70 NGKSLDGKAIKVEQA 84


>gi|62244004 modulator of estrogen induced transcription isoform b
           [Homo sapiens]
          Length = 1016

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 17/221 (7%)

Query: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
           SG    S   ++VS L  +    DL  +F KYGKV+   ++ +  +  +K    +     
Sbjct: 358 SGSSGSSTKNIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSS 417

Query: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
                C   ++  +L G++I  S+    G  ++   ++   +KS     G+  + S    
Sbjct: 418 TEVSRCIAHLHRTELHGQLI--SVEKVKGDPSKKEMKKENDEKSSSRSSGDKKNTSDRSS 475

Query: 122 KNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEEE 181
           K     ++  K+  +K +KK  +  ++IE  +E  D G   A    S++I     K EE+
Sbjct: 476 KTQASVKKEEKRSSEKSEKKESKDTKKIEGKDEKNDNG---ASGQTSESI----KKSEEK 528

Query: 182 QKKWKPSSG----VPSTSDD----SRRPRIKKSTYFSDEEE 214
           ++    S G    +  T  D    SRR R +K    S E+E
Sbjct: 529 KRISSKSPGHMVILDQTKGDHCRPSRRGRYEKIHGRSKEKE 569


>gi|63176611 modulator of estrogen induced transcription isoform a
           [Homo sapiens]
          Length = 1034

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 17/221 (7%)

Query: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
           SG    S   ++VS L  +    DL  +F KYGKV+   ++ +  +  +K    +     
Sbjct: 376 SGSSGSSTKNIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSS 435

Query: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
                C   ++  +L G++I  S+    G  ++   ++   +KS     G+  + S    
Sbjct: 436 TEVSRCIAHLHRTELHGQLI--SVEKVKGDPSKKEMKKENDEKSSSRSSGDKKNTSDRSS 493

Query: 122 KNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEEE 181
           K     ++  K+  +K +KK  +  ++IE  +E  D G   A    S++I     K EE+
Sbjct: 494 KTQASVKKEEKRSSEKSEKKESKDTKKIEGKDEKNDNG---ASGQTSESI----KKSEEK 546

Query: 182 QKKWKPSSG----VPSTSDD----SRRPRIKKSTYFSDEEE 214
           ++    S G    +  T  D    SRR R +K    S E+E
Sbjct: 547 KRISSKSPGHMVILDQTKGDHCRPSRRGRYEKIHGRSKEKE 587


>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
           64kDa, tau variant [Homo sapiens]
          Length = 616

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 17/176 (9%)

Query: 8   SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
           S  +V+V N+P+  T   L  IFS+ G VV   ++ D++T K KG  F  + D+++A + 
Sbjct: 14  SLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73

Query: 68  TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGE 127
            R +N ++  GR ++    +DN  + +        +K +    G +  +  +   + +  
Sbjct: 74  MRNLNGREFSGRALR----VDNAASEK--------NKEELKSLGPAAPIIDSPYGDPIDP 121

Query: 128 REPPKKKEKKKKKKAPEPEEEIEE-----VEESEDEGEDPALDSLSQAIAFQQAKI 178
            + P+   +      PE   E+ +     V+ S  E  +  L +   A A  QA++
Sbjct: 122 EDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQV 177


>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
          Length = 288

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 12/103 (11%)

Query: 14  VSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN 73
           V  L    T  DL  +FSKYG +  V+I+ D+ +R+S+G AF+ F + D A+      N 
Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query: 74  KQLFGRVIKASIAIDN-----------GRAA-EFIRRRNYFDK 104
            +L GR I+   +I             GR      RRR+Y+D+
Sbjct: 182 MELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDR 224


>gi|153252068 testes-specific heterogenous nuclear
          ribonucleoprotein G-T [Homo sapiens]
          Length = 392

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 27/75 (36%), Positives = 42/75 (56%)

Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
          +++  L        L   F KYG++V+V +MKD++T KS+G AF+ F     A+   R +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69

Query: 72 NNKQLFGRVIKASIA 86
          N K L G+ IK + A
Sbjct: 70 NGKSLDGKAIKVAQA 84


>gi|239752336 PREDICTED: similar to RNA binding motif protein,
          X-linked [Homo sapiens]
          Length = 138

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 30/83 (36%), Positives = 43/83 (51%)

Query: 4  GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
          G A      ++  L        L  +F KYG++V+V +MKD +T KS+G AFI F     
Sbjct: 2  GEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPAD 61

Query: 64 AQNCTRAINNKQLFGRVIKASIA 86
          A++  R +N K L G+ IK   A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84


>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
          sapiens]
          Length = 138

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 30/83 (36%), Positives = 43/83 (51%)

Query: 4  GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
          G A      ++  L        L  +F KYG++V+V +MKD +T KS+G AFI F     
Sbjct: 2  GEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPAD 61

Query: 64 AQNCTRAINNKQLFGRVIKASIA 86
          A++  R +N K L G+ IK   A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84


>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
          Length = 430

 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 11/146 (7%)

Query: 9   KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 68
           K +V+V NLP+ +  + + + F   G ++ V I++DK T   KG  ++LF + DS     
Sbjct: 286 KRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL 345

Query: 69  RAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESG-----HLSYACPKN 123
           + +NN +L GR ++   +++     E  +++N   + K     + G       +   PK+
Sbjct: 346 K-LNNSELMGRKLRVMRSVNK----EKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKS 400

Query: 124 M-LGEREPPKKKEKKKKKKAPEPEEE 148
           + +GE+    K +KK +KK+  P+++
Sbjct: 401 LFIGEKAVLLKTKKKGQKKSGRPKKQ 426


>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
          Length = 524

 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query: 12  VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
           +YV +L F++T + L  IF  +G++  + +M D +T +SKG  FI F D + A+     +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 72  NNKQLFGRVIK 82
           N  +L GR +K
Sbjct: 312 NGFELAGRPMK 322



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 25/83 (30%), Positives = 41/83 (49%)

Query: 11  TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
           TV+   L   +   DL   FS  GKV  V ++ D+++R+SKG+A++ F+D  S       
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213

Query: 71  INNKQLFGRVIKASIAIDNGRAA 93
              + L   +I  +   +  RAA
Sbjct: 214 TGQRVLGVPIIVQASQAEKNRAA 236


>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
          Length = 530

 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query: 12  VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
           +YV +L F++T + L  IF  +G++  + +M D +T +SKG  FI F D + A+     +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 72  NNKQLFGRVIK 82
           N  +L GR +K
Sbjct: 312 NGFELAGRPMK 322



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 25/83 (30%), Positives = 41/83 (49%)

Query: 11  TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
           TV+   L   +   DL   FS  GKV  V ++ D+++R+SKG+A++ F+D  S       
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213

Query: 71  INNKQLFGRVIKASIAIDNGRAA 93
              + L   +I  +   +  RAA
Sbjct: 214 TGQRVLGVPIIVQASQAEKNRAA 236


>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo
          sapiens]
          Length = 221

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 27/77 (35%), Positives = 48/77 (62%)

Query: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 69
          +++ V NL +  + + L R+F KYG+V  V I +D+ T++S+G AF+ F DK  A++   
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query: 70 AINNKQLFGRVIKASIA 86
          A++   L GR ++  +A
Sbjct: 74 AMDGAVLDGRELRVQMA 90


>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo
          sapiens]
          Length = 282

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 26/76 (34%), Positives = 45/76 (59%)

Query: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
          T+ V NL +  + + L R+F KYG+V  V I ++  T+  +G AF+ F D+  AQ+   A
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74

Query: 71 INNKQLFGRVIKASIA 86
          ++  +L GR ++  +A
Sbjct: 75 MDGAELDGRELRVQVA 90


>gi|13899354 RNA binding motif protein 4B [Homo sapiens]
          Length = 359

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)

Query: 8   SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
           + + ++V N+  + TN +L   F +YG V++  I+KD         AF+     + A   
Sbjct: 76  ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query: 68  TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLG 126
            R ++N +  G+ +   ++    R A  +      D+S CY CG+ GH S  CP +  G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181



 Score = 37.7 bits (86), Expect = 0.008
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 8/82 (9%)

Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
          +++ NLP   T  ++  +F +YGKV++  I+K+          F+   DK +A++  R +
Sbjct: 4  LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55

Query: 72 NNKQLFGRVIKASIAIDNGRAA 93
          ++ +L G  I    + +  +A+
Sbjct: 56 HHYKLHGVNINVEASKNKSKAS 77


>gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform 1
           [Homo sapiens]
          Length = 156

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query: 5   LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
           L     T+YV NL F  T   +Y +FSK G + K+ +  DK  + + G  F+ +  +  A
Sbjct: 35  LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADA 94

Query: 65  QNCTRAINNKQLFGRVIK 82
           +N  R IN  +L  R+I+
Sbjct: 95  ENAMRYINGTRLDDRIIR 112


>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
          Length = 364

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)

Query: 8   SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
           + + ++V N+  + TN +L   F +YG V++  I+KD         AF+     + A   
Sbjct: 76  TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127

Query: 68  TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLG 126
            R ++N +  G+ +   ++    R A  +      D+S CY CG+ GH S  CP +  G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
          +++ NLP   T  ++  +F +YGKV++  I+K+          F+   DK +A++  R +
Sbjct: 4  LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55

Query: 72 NNKQLFG 78
          ++ +L G
Sbjct: 56 HHYKLHG 62


>gi|7661936 scaffold attachment factor B2 [Homo sapiens]
          Length = 953

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)

Query: 8   SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
           S   ++VS L  +    DL  +FSKYGKVV   ++ +  +  ++   F+     D A  C
Sbjct: 405 SGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKC 464

Query: 68  TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGH-LSYACPKNMLG 126
              ++  +L GR+I    A +     +   R+    K +     +  H +     K ++ 
Sbjct: 465 ISHLHRTELHGRMISVEKAKNEPAGKKLSDRKECEVKKEKLSSVDRHHSVEIKIEKTVI- 523

Query: 127 EREPPKKKEKKKKKKAPEPEEEIEEVEESEDE 158
                 KKE+K +KK  +  E+I++ E+ +DE
Sbjct: 524 ------KKEEKIEKKEEKKPEDIKKEEKDQDE 549


>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
          Length = 157

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 26/87 (29%), Positives = 48/87 (55%)

Query: 5  LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
          ++  +  ++V  L F+     L   FS +G + +V ++KD++T++S+G  FI F + + A
Sbjct: 1  MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60

Query: 65 QNCTRAINNKQLFGRVIKASIAIDNGR 91
              RA+N + L GR I+   A  + R
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKSAR 87


>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
          sapiens]
          Length = 1067

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 26/76 (34%), Positives = 39/76 (51%)

Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
          +++  L        L   F KYG ++KV +MKD+ T KS+G AF+ F     A+   R +
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69

Query: 72 NNKQLFGRVIKASIAI 87
          N K L G+ I  +  I
Sbjct: 70 NGKYLDGKAIMVAQTI 85


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.128    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,041,020
Number of Sequences: 37866
Number of extensions: 471872
Number of successful extensions: 10542
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 393
Number of HSP's that attempted gapping in prelim test: 5570
Number of HSP's gapped (non-prelim): 3638
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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