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Search of human proteins with 51243065
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
sapiens]
(217 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ... 435 e-122
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 70 2e-12
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 66 3e-11
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 64 1e-10
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 63 2e-10
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 59 4e-09
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 59 4e-09
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 59 4e-09
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 59 4e-09
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 58 7e-09
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 57 1e-08
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 57 1e-08
gi|62244004 modulator of estrogen induced transcription isoform ... 57 1e-08
gi|63176611 modulator of estrogen induced transcription isoform ... 57 1e-08
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 57 1e-08
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 56 3e-08
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 56 3e-08
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 55 4e-08
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 55 4e-08
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens] 55 5e-08
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 55 6e-08
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 55 6e-08
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 54 8e-08
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 54 1e-07
gi|13899354 RNA binding motif protein 4B [Homo sapiens] 53 2e-07
gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform... 53 2e-07
gi|93277122 RNA binding motif protein 4 [Homo sapiens] 52 3e-07
gi|7661936 scaffold attachment factor B2 [Homo sapiens] 52 3e-07
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 52 3e-07
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 52 5e-07
>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
sapiens]
Length = 217
Score = 435 bits (1119), Expect = e-122
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60
MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD
Sbjct: 1 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60
Query: 61 KDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC 120
KDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC
Sbjct: 61 KDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC 120
Query: 121 PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE 180
PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE
Sbjct: 121 PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE 180
Query: 181 EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD 217
EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD
Sbjct: 181 EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD 217
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 69.7 bits (169), Expect = 2e-12
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 11/187 (5%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+++ LP+ LT D+ +FS+YG++V + +++DK T KSKG F+ + D+ S
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 72 NNKQLFGRVIKASIAIDNGRA----AEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGE 127
N ++ GR I+ + N RA E + C S LS + +
Sbjct: 98 NGIKIKGRTIRVD-HVSNYRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSESSEDEKPTK 156
Query: 128 REPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQ----AIAFQQAKIEEEQK 183
+ KKEKKKKKK E E+ EV+ + P ++ + +K E +
Sbjct: 157 KHKKDKKEKKKKKK--EKEKADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNSERAQ 214
Query: 184 KWKPSSG 190
K +P G
Sbjct: 215 KSEPREG 221
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 65.9 bits (159), Expect = 3e-11
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 68
++ VYV NL +L R FS YG + V I R G AF+ F D A++
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAV 64
Query: 69 RAINNKQLFGRVIKASIAIDNGRAAEFIR---RRNYFDKSKCYECGESGHLSYACPKNML 125
R ++ K + G ++ ++ R + F R RR + +CYECGE GH +Y C +
Sbjct: 65 RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSR 124
Query: 126 GEREPPKKKEKKKKK 140
R + + + +
Sbjct: 125 RRRSRSRSRSHSRSR 139
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 63.5 bits (153), Expect = 1e-10
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 30/209 (14%)
Query: 5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
+A K+ + + NL F + +DL +F+++G V++V I + D K +G F+ F + A
Sbjct: 109 VADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDG-KMRGFGFVQFKNLLEA 167
Query: 65 QNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNM 124
+ +N K++ GR + A+ + Y D GE
Sbjct: 168 GKALKGMNMKEIKGRTVAVDWAVAKDK---------YKDTQSVSAIGE------------ 206
Query: 125 LGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEEEQKK 184
E+ K ++ KKK E EE++EE E +D+ +D D + F EEE +
Sbjct: 207 --EKSHESKHQESVKKKGRE-EEDMEEEENDDDDDDDDEEDGV-----FDDEDEEEENIE 258
Query: 185 WKPSSGVPSTSDDSRRPRIKKSTYFSDEE 213
K + V +RP KS+ S+E+
Sbjct: 259 SKVTKPVQIQKRAVKRPAPAKSSDHSEED 287
Score = 50.8 bits (120), Expect = 9e-07
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
TV++ NL F +L + ++G++ V I+ DT SKG AF F+ +++AQ C A
Sbjct: 336 TVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLA 395
Query: 71 INNK------QLFGRVIKASIAIDNGRAAE 94
+ + +L GR +K +A+ AA+
Sbjct: 396 ASPENEAGGLKLDGRQLKVDLAVTRDEAAK 425
Score = 37.4 bits (85), Expect = 0.010
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 22/132 (16%)
Query: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
T++V LP S + L +FS+ G V + ++ +K ++ +G ++ F + Q +
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 71 INNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGEREP 130
I + G I ++A ++ +K+K E G++ + CPK +EP
Sbjct: 65 ITTFE--GCKINVTVA-----------KKKLRNKTK--EKGKNENSE--CPK-----KEP 102
Query: 131 PKKKEKKKKKKA 142
KK K KKA
Sbjct: 103 KAKKAKVADKKA 114
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 62.8 bits (151), Expect = 2e-10
Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 11/110 (10%)
Query: 5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
+A + ++V L F L ++FSKYG++ +V ++KD++T++S+G F+ F + D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 65 QNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESG 114
++ A+N K + GR I+ A G++++ ++S+ Y G +G
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA---GKSSD--------NRSRGYRGGSAG 99
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 58.5 bits (140), Expect = 4e-09
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+YV +L F++T + L IF +GK+ + +MKD DT +SKG FI F D + A+ +
Sbjct: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
Query: 72 NNKQLFGRVIK 82
N +L GR ++
Sbjct: 291 NGFELAGRPMR 301
Score = 41.2 bits (95), Expect = 7e-04
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
TV+ L + DL FS GKV V I+ D+++R+SKG+A++ F + S
Sbjct: 133 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP-LAIG 191
Query: 71 INNKQLFG--RVIKASIAIDNGRAA 93
+ ++L G +++AS A N AA
Sbjct: 192 LTGQRLLGVPIIVQASQAEKNRLAA 216
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 58.5 bits (140), Expect = 4e-09
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+YV +L F++T + L IF +GK+ + +MKD DT +SKG FI F D + A+ +
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 72 NNKQLFGRVIK 82
N +L GR ++
Sbjct: 325 NGFELAGRPMR 335
Score = 41.2 bits (95), Expect = 7e-04
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
TV+ L + DL FS GKV V I+ D+++R+SKG+A++ F + S
Sbjct: 167 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP-LAIG 225
Query: 71 INNKQLFG--RVIKASIAIDNGRAA 93
+ ++L G +++AS A N AA
Sbjct: 226 LTGQRLLGVPIIVQASQAEKNRLAA 250
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 58.5 bits (140), Expect = 4e-09
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+YV +L F++T + L IF +GK+ + +MKD DT +SKG FI F D + A+ +
Sbjct: 249 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 308
Query: 72 NNKQLFGRVIK 82
N +L GR ++
Sbjct: 309 NGFELAGRPMR 319
Score = 41.2 bits (95), Expect = 7e-04
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
TV+ L + DL FS GKV V I+ D+++R+SKG+A++ F + S
Sbjct: 151 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP-LAIG 209
Query: 71 INNKQLFG--RVIKASIAIDNGRAA 93
+ ++L G +++AS A N AA
Sbjct: 210 LTGQRLLGVPIIVQASQAEKNRLAA 234
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 58.5 bits (140), Expect = 4e-09
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+++ L L +F KYG++V+V +MKD++T KS+G AF+ F A++ R +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 72 NNKQLFGRVIKASIA 86
N K L G+ IK A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 57.8 bits (138), Expect = 7e-09
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
S +V+V N+P+ T L IFS+ G VV ++ D++T K KG F + D+++A +
Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73
Query: 68 TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGE 127
R +N ++ GR ++ +DN + + +K + G + + +
Sbjct: 74 MRNLNGREFSGRALR----VDNAASEK--------NKEELKSLGTGAPVIESPYGETISP 121
Query: 128 REPPKKKEKKKKKKAPEPEEEIEE-----VEESEDEGEDPALDSLSQAIAFQQAKI 178
+ P+ K PE E+ + V+ S E + L + A A QA++
Sbjct: 122 EDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQV 177
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 57.0 bits (136), Expect = 1e-08
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+++ L L +F KYG++V+V ++KD++T KS+G AF+ F A++ R +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 72 NNKQLFGRVIKASIA 86
N K L G+ IK A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 57.0 bits (136), Expect = 1e-08
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+++ L L +F KYG++V+V ++KD++T KS+G AF+ F A++ R +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 72 NNKQLFGRVIKASIA 86
N K L G+ IK A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 57.0 bits (136), Expect = 1e-08
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 17/221 (7%)
Query: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
SG S ++VS L + DL +F KYGKV+ ++ + + +K +
Sbjct: 358 SGSSGSSTKNIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSS 417
Query: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
C ++ +L G++I S+ G ++ ++ +KS G+ + S
Sbjct: 418 TEVSRCIAHLHRTELHGQLI--SVEKVKGDPSKKEMKKENDEKSSSRSSGDKKNTSDRSS 475
Query: 122 KNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEEE 181
K ++ K+ +K +KK + ++IE +E D G A S++I K EE+
Sbjct: 476 KTQASVKKEEKRSSEKSEKKESKDTKKIEGKDEKNDNG---ASGQTSESI----KKSEEK 528
Query: 182 QKKWKPSSG----VPSTSDD----SRRPRIKKSTYFSDEEE 214
++ S G + T D SRR R +K S E+E
Sbjct: 529 KRISSKSPGHMVILDQTKGDHCRPSRRGRYEKIHGRSKEKE 569
>gi|63176611 modulator of estrogen induced transcription isoform a
[Homo sapiens]
Length = 1034
Score = 57.0 bits (136), Expect = 1e-08
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 17/221 (7%)
Query: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61
SG S ++VS L + DL +F KYGKV+ ++ + + +K +
Sbjct: 376 SGSSGSSTKNIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSS 435
Query: 62 DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121
C ++ +L G++I S+ G ++ ++ +KS G+ + S
Sbjct: 436 TEVSRCIAHLHRTELHGQLI--SVEKVKGDPSKKEMKKENDEKSSSRSSGDKKNTSDRSS 493
Query: 122 KNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEEE 181
K ++ K+ +K +KK + ++IE +E D G A S++I K EE+
Sbjct: 494 KTQASVKKEEKRSSEKSEKKESKDTKKIEGKDEKNDNG---ASGQTSESI----KKSEEK 546
Query: 182 QKKWKPSSG----VPSTSDD----SRRPRIKKSTYFSDEEE 214
++ S G + T D SRR R +K S E+E
Sbjct: 547 KRISSKSPGHMVILDQTKGDHCRPSRRGRYEKIHGRSKEKE 587
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 57.0 bits (136), Expect = 1e-08
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
S +V+V N+P+ T L IFS+ G VV ++ D++T K KG F + D+++A +
Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73
Query: 68 TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGE 127
R +N ++ GR ++ +DN + + +K + G + + + + +
Sbjct: 74 MRNLNGREFSGRALR----VDNAASEK--------NKEELKSLGPAAPIIDSPYGDPIDP 121
Query: 128 REPPKKKEKKKKKKAPEPEEEIEE-----VEESEDEGEDPALDSLSQAIAFQQAKI 178
+ P+ + PE E+ + V+ S E + L + A A QA++
Sbjct: 122 EDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQV 177
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 55.8 bits (133), Expect = 3e-08
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 14 VSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN 73
V L T DL +FSKYG + V+I+ D+ +R+S+G AF+ F + D A+ N
Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181
Query: 74 KQLFGRVIKASIAIDN-----------GRAA-EFIRRRNYFDK 104
+L GR I+ +I GR RRR+Y+D+
Sbjct: 182 MELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDR 224
>gi|153252068 testes-specific heterogenous nuclear
ribonucleoprotein G-T [Homo sapiens]
Length = 392
Score = 55.8 bits (133), Expect = 3e-08
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+++ L L F KYG++V+V +MKD++T KS+G AF+ F A+ R +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 72 NNKQLFGRVIKASIA 86
N K L G+ IK + A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 55.5 bits (132), Expect = 4e-08
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 4 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
G A ++ L L +F KYG++V+V +MKD +T KS+G AFI F
Sbjct: 2 GEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPAD 61
Query: 64 AQNCTRAINNKQLFGRVIKASIA 86
A++ R +N K L G+ IK A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 55.5 bits (132), Expect = 4e-08
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 4 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
G A ++ L L +F KYG++V+V +MKD +T KS+G AFI F
Sbjct: 2 GEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPAD 61
Query: 64 AQNCTRAINNKQLFGRVIKASIA 86
A++ R +N K L G+ IK A
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQA 84
>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
Length = 430
Score = 55.1 bits (131), Expect = 5e-08
Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 11/146 (7%)
Query: 9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 68
K +V+V NLP+ + + + + F G ++ V I++DK T KG ++LF + DS
Sbjct: 286 KRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL 345
Query: 69 RAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESG-----HLSYACPKN 123
+ +NN +L GR ++ +++ E +++N + K + G + PK+
Sbjct: 346 K-LNNSELMGRKLRVMRSVNK----EKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKS 400
Query: 124 M-LGEREPPKKKEKKKKKKAPEPEEE 148
+ +GE+ K +KK +KK+ P+++
Sbjct: 401 LFIGEKAVLLKTKKKGQKKSGRPKKQ 426
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 54.7 bits (130), Expect = 6e-08
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+YV +L F++T + L IF +G++ + +M D +T +SKG FI F D + A+ +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 72 NNKQLFGRVIK 82
N +L GR +K
Sbjct: 312 NGFELAGRPMK 322
Score = 43.5 bits (101), Expect = 1e-04
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
TV+ L + DL FS GKV V ++ D+++R+SKG+A++ F+D S
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 71 INNKQLFGRVIKASIAIDNGRAA 93
+ L +I + + RAA
Sbjct: 214 TGQRVLGVPIIVQASQAEKNRAA 236
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 54.7 bits (130), Expect = 6e-08
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+YV +L F++T + L IF +G++ + +M D +T +SKG FI F D + A+ +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 72 NNKQLFGRVIK 82
N +L GR +K
Sbjct: 312 NGFELAGRPMK 322
Score = 43.5 bits (101), Expect = 1e-04
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
TV+ L + DL FS GKV V ++ D+++R+SKG+A++ F+D S
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 71 INNKQLFGRVIKASIAIDNGRAA 93
+ L +I + + RAA
Sbjct: 214 TGQRVLGVPIIVQASQAEKNRAA 236
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo
sapiens]
Length = 221
Score = 54.3 bits (129), Expect = 8e-08
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 69
+++ V NL + + + L R+F KYG+V V I +D+ T++S+G AF+ F DK A++
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 70 AINNKQLFGRVIKASIA 86
A++ L GR ++ +A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo
sapiens]
Length = 282
Score = 53.9 bits (128), Expect = 1e-07
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
T+ V NL + + + L R+F KYG+V V I ++ T+ +G AF+ F D+ AQ+ A
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 71 INNKQLFGRVIKASIA 86
++ +L GR ++ +A
Sbjct: 75 MDGAELDGRELRVQVA 90
>gi|13899354 RNA binding motif protein 4B [Homo sapiens]
Length = 359
Score = 53.1 bits (126), Expect = 2e-07
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
+ + ++V N+ + TN +L F +YG V++ I+KD AF+ + A
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 68 TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLG 126
R ++N + G+ + ++ R A + D+S CY CG+ GH S CP + G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPVDRTG 181
Score = 37.7 bits (86), Expect = 0.008
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+++ NLP T ++ +F +YGKV++ I+K+ F+ DK +A++ R +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
Query: 72 NNKQLFGRVIKASIAIDNGRAA 93
++ +L G I + + +A+
Sbjct: 56 HHYKLHGVNINVEASKNKSKAS 77
>gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform 1
[Homo sapiens]
Length = 156
Score = 52.8 bits (125), Expect = 2e-07
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
L T+YV NL F T +Y +FSK G + K+ + DK + + G F+ + + A
Sbjct: 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADA 94
Query: 65 QNCTRAINNKQLFGRVIK 82
+N R IN +L R+I+
Sbjct: 95 ENAMRYINGTRLDDRIIR 112
>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
Length = 364
Score = 52.4 bits (124), Expect = 3e-07
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
+ + ++V N+ + TN +L F +YG V++ I+KD AF+ + A
Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA 127
Query: 68 TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLG 126
R ++N + G+ + ++ R A + D+S CY CG+ GH S CP + G
Sbjct: 128 IRGLDNTEFQGKRMHVQLSTSRLRTAPGMG-----DQSGCYRCGKEGHWSKECPIDRSG 181
Score = 36.6 bits (83), Expect = 0.017
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+++ NLP T ++ +F +YGKV++ I+K+ F+ DK +A++ R +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
Query: 72 NNKQLFG 78
++ +L G
Sbjct: 56 HHYKLHG 62
>gi|7661936 scaffold attachment factor B2 [Homo sapiens]
Length = 953
Score = 52.4 bits (124), Expect = 3e-07
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
S ++VS L + DL +FSKYGKVV ++ + + ++ F+ D A C
Sbjct: 405 SGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKC 464
Query: 68 TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGH-LSYACPKNMLG 126
++ +L GR+I A + + R+ K + + H + K ++
Sbjct: 465 ISHLHRTELHGRMISVEKAKNEPAGKKLSDRKECEVKKEKLSSVDRHHSVEIKIEKTVI- 523
Query: 127 EREPPKKKEKKKKKKAPEPEEEIEEVEESEDE 158
KKE+K +KK + E+I++ E+ +DE
Sbjct: 524 ------KKEEKIEKKEEKKPEDIKKEEKDQDE 549
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 52.4 bits (124), Expect = 3e-07
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
++ + ++V L F+ L FS +G + +V ++KD++T++S+G FI F + + A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 65 QNCTRAINNKQLFGRVIKASIAIDNGR 91
RA+N + L GR I+ A + R
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 51.6 bits (122), Expect = 5e-07
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
+++ L L F KYG ++KV +MKD+ T KS+G AF+ F A+ R +
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 72 NNKQLFGRVIKASIAI 87
N K L G+ I + I
Sbjct: 70 NGKYLDGKAIMVAQTI 85
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,041,020
Number of Sequences: 37866
Number of extensions: 471872
Number of successful extensions: 10542
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 393
Number of HSP's that attempted gapping in prelim test: 5570
Number of HSP's gapped (non-prelim): 3638
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.