Guide to the Human Genome
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Name: MCF2 Sequence: fasta or formatted (985aa) NCBI GI: 153791628
Description:

MCF.2 cell line derived transforming sequence isoform a

Referenced in:

Rho and Rac

Other entries for this name:
alt prot [925aa] MCF.2 cell line derived transforming sequence isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         52           2
 C cysteine            1.9         19           2
 D aspartate           5.2         51           2
 E glutamate           9.2         91           3
 F phenylalanine       4.7         46           2
 G glycine             3.9         38           2
 H histidine           2.1         21           2
 I isoleucine          6.1         60           2
 K lysine              7.5         74           2
 L leucine            11.6        114           3
 M methionine          2.5         25           1
 N asparagine          4.8         47           1
 P proline             3.1         31           2
 Q glutamine           6.7         66           2
 R arginine            4.7         46           2
 S serine              6.3         62           3
 T threonine           4.8         47           1
 V valine              5.1         50           2
 W tryptophan          1.5         15           1
 Y tyrosine            3.0         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MCF.2 cell line derived transforming sequence isofo... 
MCF2                  0.923   MCF.2 cell line derived transforming sequence isofo...
MCF2L                 0.420   MCF.2 cell line derived transforming sequence-like ...
MCF2L                 0.420   MCF.2 cell line derived transforming sequence-like ...
MCF2L2                0.311   Rho family guanine-nucleotide exchange factor 
KALRN                 0.105   kalirin, RhoGEF kinase isoform 1 
KALRN                 0.103   kalirin, RhoGEF kinase isoform 2 
TRIO                  0.099   triple functional domain (PTPRF interacting) 
KALRN                 0.086   kalirin, RhoGEF kinase isoform 3 
GEFT                  0.081   RhoA/RAC/CDC42 exchange factor isoform 1 
GEFT                  0.081   RhoA/RAC/CDC42 exchange factor isoform 3 
PLEKHG4B              0.080   pleckstrin homology domain containing, family G (wi...
PLEKHG4               0.077   pleckstrin homology domain containing, family G (wi...
PLEKHG4               0.077   pleckstrin homology domain containing, family G (wi...
PLEKHG4               0.077   pleckstrin homology domain containing, family G (wi...
PLEKHG4               0.077   pleckstrin homology domain containing, family G (wi...
PLEKHG4               0.077   pleckstrin homology domain containing, family G (wit...
PLEKHG1               0.058   pleckstrin homology domain containing, family G (wit...
OBSCN                 0.056   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.056   obscurin, cytoskeletal calmodulin and titin-interac...
PLEKHG2               0.045   common-site lymphoma/leukemia guanine nucleotide ex...
FLJ10357              0.041   hypothetical protein LOC55701 
ARHGEF4               0.040   Rho guanine nucleotide exchange factor 4 isoform a [...
ARHGEF4               0.040   Rho guanine nucleotide exchange factor 4 isoform b [...
SPATA13               0.038   spermatogenesis associated 13 
ARHGEF9               0.037   Cdc42 guanine exchange factor 9 
PREX1                 0.033   phosphatidylinositol-3,4,5-trisphosphate-dependent R...
PREX2                 0.033   DEP domain containing 2 isoform b 
PREX2                 0.033   DEP domain containing 2 isoform a 
PLEKHG3               0.031   pleckstrin homology domain containing, family G, mem...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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