Guide to the Human Genome
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Name: SUV420H1 Sequence: fasta or formatted (885aa) NCBI GI: 50659082
Description:

suppressor of variegation 4-20 homolog 1 isoform 1

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [393aa] suppressor of variegation 4-20 homolog 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         44           2
 C cysteine            2.5         22           2
 D aspartate           6.3         56           3
 E glutamate           7.7         68           3
 F phenylalanine       2.9         26           2
 G glycine             6.2         55           2
 H histidine           2.6         23           1
 I isoleucine          3.4         30           1
 K lysine              9.6         85           3
 L leucine             7.7         68           2
 M methionine          1.6         14           1
 N asparagine          6.6         58           2
 P proline             4.4         39           2
 Q glutamine           3.3         29           2
 R arginine            6.8         60           3
 S serine             11.4        101           4
 T threonine           4.9         43           2
 V valine              4.5         40           2
 W tryptophan          0.5          4           1
 Y tyrosine            2.3         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   suppressor of variegation 4-20 homolog 1 isoform 1 [... 
SUV420H1              0.444   suppressor of variegation 4-20 homolog 1 isoform 2 [...
SUV420H2              0.179   suppressor of variegation 4-20 homolog 2 
ATRX                  0.015   transcriptional regulator ATRX isoform 2 
ATRX                  0.015   transcriptional regulator ATRX isoform 1 
WHSC1                 0.012   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.012   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.012   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.012   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
DSPP                  0.011   dentin sialophosphoprotein preproprotein 
FAM178A               0.011   hypothetical protein LOC55719 isoform 1 
FAM178A               0.011   hypothetical protein LOC55719 isoform 2 
ASH1L                 0.010   absent, small, or homeotic 1-like 
PPIG                  0.010   peptidylprolyl isomerase G 
KIAA1009              0.010   KIAA1009 protein 
SMYD3                 0.008   SET and MYND domain containing 3 
CENPC1                0.008   centromere protein C 1 
MAP1B                 0.008   microtubule-associated protein 1B 
SFRS5                 0.008   splicing factor, arginine/serine-rich 5 
SFRS5                 0.008   splicing factor, arginine/serine-rich 5 
SFRS18                0.008   splicing factor, arginine/serine-rich 130 
SFRS18                0.008   splicing factor, arginine/serine-rich 130 
SMC4                  0.008   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.008   SMC4 structural maintenance of chromosomes 4-like 1 ...
AGGF1                 0.008   angiogenic factor VG5Q 
DNTTIP2               0.008   deoxynucleotidyltransferase, terminal, interacting p...
NSD1                  0.008   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.008   nuclear receptor binding SET domain protein 1 isofor...
C5orf41               0.007   luman-recruiting factor 
YTHDC1                0.007   splicing factor YT521-B isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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