Guide to the Human Genome
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Name: C5orf41 Sequence: fasta or formatted (639aa) NCBI GI: 23957698
Description:

luman-recruiting factor

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         27           3
 C cysteine            1.6         10           1
 D aspartate           7.5         48           3
 E glutamate          10.3         66           8
 F phenylalanine       2.7         17           1
 G glycine             4.7         30           2
 H histidine           1.6         10           2
 I isoleucine          2.7         17           1
 K lysine              8.0         51           3
 L leucine             9.2         59           3
 M methionine          1.7         11           1
 N asparagine          5.3         34           1
 P proline             6.1         39           2
 Q glutamine           5.0         32           2
 R arginine            3.9         25           2
 S serine             10.3         66           3
 T threonine           5.8         37           1
 V valine              5.3         34           1
 W tryptophan          0.9          6           1
 Y tyrosine            3.1         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   luman-recruiting factor 
AP3B2                 0.025   adaptor-related protein complex 3, beta 2 subunit [H...
NCL                   0.024   nucleolin 
MYT1L                 0.024   myelin transcription factor 1-like 
ANP32B                0.023   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
PELP1                 0.022   proline, glutamic acid and leucine rich protein 1 [...
MYT1                  0.022   myelin transcription factor 1 
SETD1B                0.022   SET domain containing 1B 
KIAA1429              0.021   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.021   hypothetical protein LOC25962 isoform 2 
DAXX                  0.021   death-domain associated protein isoform a 
DAXX                  0.021   death-domain associated protein isoform a 
DAXX                  0.021   death-domain associated protein isoform b 
TPR                   0.021   nuclear pore complex-associated protein TPR 
ACIN1                 0.021   apoptotic chromatin condensation inducer 1 
ANP32E                0.021   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.021   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.021   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
BAZ2B                 0.021   bromodomain adjacent to zinc finger domain, 2B [Homo...
NRD1                  0.020   nardilysin isoform b 
NRD1                  0.020   nardilysin isoform a 
YTHDC1                0.020   splicing factor YT521-B isoform 2 
YTHDC1                0.020   splicing factor YT521-B isoform 1 
TTBK1                 0.019   tau tubulin kinase 1 
UBTF                  0.019   upstream binding transcription factor, RNA polymera...
UBTF                  0.019   upstream binding transcription factor, RNA polymera...
UBTF                  0.019   upstream binding transcription factor, RNA polymerase...
PPM1G                 0.018   protein phosphatase 1G 
PPM1G                 0.018   protein phosphatase 1G 
DCAF8L2               0.018   DDB1 and CUL4 associated factor 8-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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