Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: WHSC1 Sequence: fasta or formatted (1365aa) NCBI GI: 19913348
Description:

Wolf-Hirschhorn syndrome candidate 1 protein isoform 1

Referenced in:

Additional Brain Proteins
Histones, Related Proteins, and Modifying Enzymes
PHD Finger Proteins
Small RNAs in RNA Processing

Other entries for this name:
alt mRNA [1365aa] Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
alt mRNA [1365aa] Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
alt prot [647aa] Wolf-Hirschhorn syndrome candidate 1 protein isoform 3
alt mRNA [1365aa] Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
alt prot [629aa] Wolf-Hirschhorn syndrome candidate 1 protein isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         97           2
 C cysteine            5.2         71           2
 D aspartate           4.3         59           1
 E glutamate           8.0        109           3
 F phenylalanine       3.8         52           3
 G glycine             7.0         95           2
 H histidine           2.8         38           2
 I isoleucine          3.4         47           2
 K lysine              9.7        132           3
 L leucine             5.9         81           3
 M methionine          1.6         22           2
 N asparagine          3.4         47           1
 P proline             5.9         81           3
 Q glutamine           3.4         47           1
 R arginine            6.4         87           5
 S serine              8.9        121           3
 T threonine           4.7         64           2
 V valine              5.1         69           2
 W tryptophan          1.2         17           2
 Y tyrosine            2.1         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Wolf-Hirschhorn syndrome candidate 1 protein isoform... 
WHSC1                 1.000   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 1.000   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 1.000   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
WHSC1                 0.431   Wolf-Hirschhorn syndrome candidate 1 protein isoform ...
WHSC1                 0.431   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1L1               0.408   WHSC1L1 protein isoform long 
NSD1                  0.363   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.363   nuclear receptor binding SET domain protein 1 isofor...
SETD2                 0.063   SET domain containing 2 
WHSC1L1               0.063   WHSC1L1 protein isoform short 
ASH1L                 0.057   absent, small, or homeotic 1-like 
SUV39H2               0.027   suppressor of variegation 3-9 homolog 2 
EZH1                  0.026   enhancer of zeste homolog 1 
EZH2                  0.025   enhancer of zeste 2 isoform b 
EZH2                  0.025   enhancer of zeste 2 isoform a 
SETD1B                0.023   SET domain containing 1B 
MLL                   0.023   myeloid/lymphoid or mixed-lineage leukemia protein [...
SUV39H1               0.023   suppressor of variegation 3-9 homolog 1 
SETMAR                0.021   SET domain and mariner transposase fusion 
MLL2                  0.021   myeloid/lymphoid or mixed-lineage leukemia 2 
SETD1A                0.020   SET domain containing 1A 
EHMT2                 0.019   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.019   euchromatic histone-lysine N-methyltransferase 2 is...
MLL4                  0.019   myeloid/lymphoid or mixed-lineage leukemia 4 
MLL3                  0.019   myeloid/lymphoid or mixed-lineage leukemia 3 
EHMT1                 0.019   euchromatic histone-lysine N-methyltransferase 1 is...
MSH6                  0.017   mutS homolog 6 
ZCWPW1                0.014   zinc finger, CW type with PWWP domain 1 
CHD5                  0.013   chromodomain helicase DNA binding protein 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press