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Search of human proteins with 5032071
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens]
(317 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens] 654 0.0
gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens] 654 0.0
gi|37588859 ring finger protein 41 isoform 2 [Homo sapiens] 501 e-142
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 98 8e-21
gi|87241872 ring finger protein 151 [Homo sapiens] 86 4e-17
gi|22027622 TNF receptor-associated factor 4 [Homo sapiens] 70 3e-12
gi|187607085 ligand of numb-protein X 1 isoform a [Homo sapiens] 62 5e-10
gi|24025688 ligand of numb-protein X 2 [Homo sapiens] 60 3e-09
gi|22027630 TNF receptor-associated factor 6 [Homo sapiens] 59 4e-09
gi|4759254 TNF receptor-associated factor 6 [Homo sapiens] 59 4e-09
gi|109134327 PTD016 protein [Homo sapiens] 52 5e-07
gi|22027627 TNF receptor-associated factor 5 [Homo sapiens] 49 6e-06
gi|77404348 TNF receptor-associated factor 5 [Homo sapiens] 49 6e-06
gi|11321603 TNF receptor-associated factor 5 [Homo sapiens] 49 6e-06
gi|31742478 ring finger protein 3 [Homo sapiens] 49 6e-06
gi|18079262 tripartite motif-containing 6 isoform 2 [Homo sapiens] 49 8e-06
gi|51477692 tripartite motif-containing 6 isoform 1 [Homo sapiens] 49 8e-06
gi|51477690 tripartite motif-containing 6 and tripartite motif-c... 49 8e-06
gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens] 48 1e-05
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 47 2e-05
gi|8923898 zinc finger protein 313 [Homo sapiens] 47 2e-05
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 47 3e-05
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 47 3e-05
gi|117938316 tripartite motif-containing 22 [Homo sapiens] 46 4e-05
gi|37595555 ring finger protein 125 [Homo sapiens] 46 5e-05
gi|239048909 checkpoint with forkhead and ring finger domains is... 45 6e-05
gi|239048905 checkpoint with forkhead and ring finger domains is... 45 6e-05
gi|239048862 checkpoint with forkhead and ring finger domains is... 45 6e-05
gi|239048792 checkpoint with forkhead and ring finger domains is... 45 6e-05
gi|239048907 checkpoint with forkhead and ring finger domains is... 45 6e-05
>gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 654 bits (1686), Expect = 0.0
Identities = 317/317 (100%), Positives = 317/317 (100%)
Query: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV 60
MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV
Sbjct: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV 60
Query: 61 TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGC 120
TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGC
Sbjct: 61 TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGC 120
Query: 121 GLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAI 180
GLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAI
Sbjct: 121 GLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAI 180
Query: 181 RSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPA 240
RSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPA
Sbjct: 181 RSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPA 240
Query: 241 SIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDM 300
SIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDM
Sbjct: 241 SIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDM 300
Query: 301 VQEPGLVMIFAHGVEEI 317
VQEPGLVMIFAHGVEEI
Sbjct: 301 VQEPGLVMIFAHGVEEI 317
>gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 654 bits (1686), Expect = 0.0
Identities = 317/317 (100%), Positives = 317/317 (100%)
Query: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV 60
MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV
Sbjct: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV 60
Query: 61 TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGC 120
TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGC
Sbjct: 61 TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGC 120
Query: 121 GLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAI 180
GLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAI
Sbjct: 121 GLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAI 180
Query: 181 RSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPA 240
RSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPA
Sbjct: 181 RSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPA 240
Query: 241 SIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDM 300
SIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDM
Sbjct: 241 SIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDM 300
Query: 301 VQEPGLVMIFAHGVEEI 317
VQEPGLVMIFAHGVEEI
Sbjct: 301 VQEPGLVMIFAHGVEEI 317
>gi|37588859 ring finger protein 41 isoform 2 [Homo sapiens]
Length = 246
Score = 501 bits (1289), Expect = e-142
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 72 MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN 131
MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN
Sbjct: 1 MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN 60
Query: 132 HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE 191
HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE
Sbjct: 61 HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE 120
Query: 192 ETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH 251
ETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH
Sbjct: 121 ETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH 180
Query: 252 ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA 311
ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA
Sbjct: 181 ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA 240
Query: 312 HGVEEI 317
HGVEEI
Sbjct: 241 HGVEEI 246
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 98.2 bits (243), Expect = 8e-21
Identities = 68/206 (33%), Positives = 92/206 (44%), Gaps = 40/206 (19%)
Query: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVD---- 56
MG+++ RF GDVD DL C +C VLE+P+ P C H FC C+ W Q+ +CP
Sbjct: 1 MGFELDRFDGDVDPDLKCALCHKVLEDPLTTP-CGHVFCAGCVLPWVVQEGSCPARCRGR 59
Query: 57 RSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKR---- 112
S + H+ P+ R+ + KL I C A GC VV+L L HL C+ P R
Sbjct: 60 LSAKELNHVLPLKRL----ILKLDIKCAYATRGCGRVVKLQQLPEHLERCDFAPARCRHA 115
Query: 113 ----------------------PV-TCEQGCGLEMPKDE--LPNHNCIKHLRSVVQQQQT 147
PV C++GCGL + E H C + LR+ Q
Sbjct: 116 GCGQVLLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQA 175
Query: 148 RIAELEKTSAEHKHQLAEQKRDIQLL 173
R+ L K A K L KR+ L+
Sbjct: 176 RLGALHK--ALKKEALRAGKREKSLV 199
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 85.9 bits (211), Expect = 4e-17
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 2 GYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV- 60
GYD+ F D + +C +C GVL+ P + P C H FC CI +W ++Q+TCP R V
Sbjct: 4 GYDLNLFASPPDSNFVCSVCHGVLKRPARLP-CSHIFCKKCILRWLARQKTCPCCRKEVK 62
Query: 61 --TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTC-E 117
V H+ +R + +L++ C NA GC L + H C P C
Sbjct: 63 RKKVVHMNK----LRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSC---PFELTACPN 115
Query: 118 QGCGLEMPKDELPNHNCIKHLRSVVQQQ 145
+GC ++P+ L H +H + QQ+
Sbjct: 116 EGCTSQVPRGTLAEHR--QHCQQGSQQR 141
>gi|22027622 TNF receptor-associated factor 4 [Homo sapiens]
Length = 470
Score = 69.7 bits (169), Expect = 3e-12
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 16 LICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQ-TCPVDRSVVTVAHLRPVPRIMRN 74
L+CP+C + EPVQ C H FC+ C+ ++ S+ CP D+ + A + P P +
Sbjct: 16 LLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQ 75
Query: 75 MLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNH 132
+L L I C ++ GC L +L HL+ C N + C C +++ + +LP H
Sbjct: 76 VLG-LPIRCIHSEEGCRWSGPLRHLQGHLNTCSFN---VIPCPNRCPMKLSRRDLPAH 129
>gi|187607085 ligand of numb-protein X 1 isoform a [Homo sapiens]
Length = 728
Score = 62.4 bits (150), Expect = 5e-10
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 11 DVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPR 70
+VD+DLIC IC L +P+ P C H +C C+T + ++ CP+DR + + H +
Sbjct: 34 EVDDDLICHICLQALLDPLDTP-CGHTYCTLCLTNFLVEKDFCPMDRKPLVLQHCKKSSI 92
Query: 71 IMRNMLSKLQIAC 83
++ +L+KL + C
Sbjct: 93 LVNKLLNKLLVTC 105
>gi|24025688 ligand of numb-protein X 2 [Homo sapiens]
Length = 690
Score = 59.7 bits (143), Expect = 3e-09
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 8 FQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRP 67
+Q +VD+DL+C IC L +P+ P C H FC C+ + ++ CP+DR + +
Sbjct: 40 YQNEVDDDLVCHICLQPLLQPLDTP-CGHTFCYKCLRNFLQEKDFCPLDRKRLHFKLCKK 98
Query: 68 VPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSD-CEHNPKRPVTCEQ 118
++ +L KL + C + C V++ +L +HL + C R V E+
Sbjct: 99 SSILVHKLLDKLLVLCPFSSV-CKDVMQRCDLEAHLKNRCPGASHRRVALER 149
>gi|22027630 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 59.3 bits (142), Expect = 4e-09
Identities = 40/107 (37%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 2 GYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQ-QTCPVDRSVV 60
GYDV F ++ CPIC L E VQ P C H FC ACI + CPVD ++
Sbjct: 55 GYDV-EFDPPLESKYECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEIL 112
Query: 61 TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCE 107
L P R +LS L + C N GC + L +L H + CE
Sbjct: 113 LENQLFPDNFAKREILS-LMVKCPNE--GCLHKMELRHLEDHQAHCE 156
>gi|4759254 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 59.3 bits (142), Expect = 4e-09
Identities = 40/107 (37%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 2 GYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQ-QTCPVDRSVV 60
GYDV F ++ CPIC L E VQ P C H FC ACI + CPVD ++
Sbjct: 55 GYDV-EFDPPLESKYECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEIL 112
Query: 61 TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCE 107
L P R +LS L + C N GC + L +L H + CE
Sbjct: 113 LENQLFPDNFAKREILS-LMVKCPNE--GCLHKMELRHLEDHQAHCE 156
>gi|109134327 PTD016 protein [Homo sapiens]
Length = 435
Score = 52.4 bits (124), Expect = 5e-07
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 13 DEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVT 61
D D IC IC ++P+ C+H FC C+T WF++++TCP+ R+V++
Sbjct: 370 DVDDICSICQAEFQKPILLI-CQHIFCEECMTLWFNREKTCPLCRTVIS 417
>gi|22027627 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 48.9 bits (115), Expect = 6e-06
Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 7 RFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQW--FSQQQTCPVDRSVVTVAH 64
+F ++E C C VL P Q C H FC CI + CPVD+ V+
Sbjct: 34 QFVERLEERYKCAFCHSVLHNPHQTG-CGHRFCQHCILSLRELNTVPICPVDKEVIKSQE 92
Query: 65 LRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTC-EQGCGLE 123
+ R +L+ L + C NA GC+A V L HL C +PV C + C
Sbjct: 93 VFKDNCCKREVLN-LYVYCSNAP-GCNAKVILGRYQDHLQQCLF---QPVQCSNEKCREP 147
Query: 124 MPKDELPNH 132
+ + +L H
Sbjct: 148 VLRKDLKEH 156
>gi|77404348 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 48.9 bits (115), Expect = 6e-06
Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 7 RFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQW--FSQQQTCPVDRSVVTVAH 64
+F ++E C C VL P Q C H FC CI + CPVD+ V+
Sbjct: 34 QFVERLEERYKCAFCHSVLHNPHQTG-CGHRFCQHCILSLRELNTVPICPVDKEVIKSQE 92
Query: 65 LRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTC-EQGCGLE 123
+ R +L+ L + C NA GC+A V L HL C +PV C + C
Sbjct: 93 VFKDNCCKREVLN-LYVYCSNAP-GCNAKVILGRYQDHLQQCLF---QPVQCSNEKCREP 147
Query: 124 MPKDELPNH 132
+ + +L H
Sbjct: 148 VLRKDLKEH 156
>gi|11321603 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 48.9 bits (115), Expect = 6e-06
Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 7 RFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQW--FSQQQTCPVDRSVVTVAH 64
+F ++E C C VL P Q C H FC CI + CPVD+ V+
Sbjct: 34 QFVERLEERYKCAFCHSVLHNPHQTG-CGHRFCQHCILSLRELNTVPICPVDKEVIKSQE 92
Query: 65 LRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTC-EQGCGLE 123
+ R +L+ L + C NA GC+A V L HL C +PV C + C
Sbjct: 93 VFKDNCCKREVLN-LYVYCSNAP-GCNAKVILGRYQDHLQQCLF---QPVQCSNEKCREP 147
Query: 124 MPKDELPNH 132
+ + +L H
Sbjct: 148 VLRKDLKEH 156
>gi|31742478 ring finger protein 3 [Homo sapiens]
Length = 242
Score = 48.9 bits (115), Expect = 6e-06
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 11 DVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAH 64
D++ + C +CSG L + C H FC +C+ ++ + TCP R V+ +H
Sbjct: 10 DINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSH 63
>gi|18079262 tripartite motif-containing 6 isoform 2 [Homo sapiens]
Length = 488
Score = 48.5 bits (114), Expect = 8e-06
Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 54/250 (21%)
Query: 11 DVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQ-------QQTCPVDRSVVTVA 63
D+ E++ CPIC +L EP+ C H+FC ACIT + +++CPV ++
Sbjct: 8 DIREEVTCPICLELLTEPLSI-DCGHSFCQACITPNGRESVIGQEGERSCPVCQTSYQPG 66
Query: 64 HLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQG---- 119
+LRP R + N++ +L+ V+ + + +H K + C++
Sbjct: 67 NLRP-NRHLANIVRRLR----------EVVLGPGKQLKAVLCADHGEKLQLFCQEDGKVI 115
Query: 120 CGL-EMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMR 178
C L E ++ +H + + V Q+ Q + E K +L ++++ + L A++R
Sbjct: 116 CWLCERSQEHRGHHTFL--VEEVAQEYQEKFQESLK-------KLKNEEQEAEKLTAFIR 166
Query: 179 AIRSVNPNLQNLEETIEYNEILEWVNSLQPARV---TRWGGMISTPDAVLQAVIKRSLVE 235
++ W N ++P R T + + + D V Q +K+ E
Sbjct: 167 EKKT------------------SWKNQMEPERCRIQTEFNQLRNILDRVEQRELKKLEQE 208
Query: 236 SGCPASIVNE 245
I+ E
Sbjct: 209 EKKGLRIIEE 218
>gi|51477692 tripartite motif-containing 6 isoform 1 [Homo sapiens]
Length = 516
Score = 48.5 bits (114), Expect = 8e-06
Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 54/250 (21%)
Query: 11 DVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQ-------QQTCPVDRSVVTVA 63
D+ E++ CPIC +L EP+ C H+FC ACIT + +++CPV ++
Sbjct: 36 DIREEVTCPICLELLTEPLSI-DCGHSFCQACITPNGRESVIGQEGERSCPVCQTSYQPG 94
Query: 64 HLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQG---- 119
+LRP R + N++ +L+ V+ + + +H K + C++
Sbjct: 95 NLRP-NRHLANIVRRLR----------EVVLGPGKQLKAVLCADHGEKLQLFCQEDGKVI 143
Query: 120 CGL-EMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMR 178
C L E ++ +H + + V Q+ Q + E K +L ++++ + L A++R
Sbjct: 144 CWLCERSQEHRGHHTFL--VEEVAQEYQEKFQESLK-------KLKNEEQEAEKLTAFIR 194
Query: 179 AIRSVNPNLQNLEETIEYNEILEWVNSLQPARV---TRWGGMISTPDAVLQAVIKRSLVE 235
++ W N ++P R T + + + D V Q +K+ E
Sbjct: 195 EKKT------------------SWKNQMEPERCRIQTEFNQLRNILDRVEQRELKKLEQE 236
Query: 236 SGCPASIVNE 245
I+ E
Sbjct: 237 EKKGLRIIEE 246
>gi|51477690 tripartite motif-containing 6 and tripartite
motif-containing 34 [Homo sapiens]
Length = 842
Score = 48.5 bits (114), Expect = 8e-06
Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 54/250 (21%)
Query: 11 DVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQ-------QQTCPVDRSVVTVA 63
D+ E++ CPIC +L EP+ C H+FC ACIT + +++CPV ++
Sbjct: 36 DIREEVTCPICLELLTEPLSI-DCGHSFCQACITPNGRESVIGQEGERSCPVCQTSYQPG 94
Query: 64 HLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQG---- 119
+LRP R + N++ +L+ V+ + + +H K + C++
Sbjct: 95 NLRP-NRHLANIVRRLR----------EVVLGPGKQLKAVLCADHGEKLQLFCQEDGKVI 143
Query: 120 CGL-EMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMR 178
C L E ++ +H + + V Q+ Q + E K +L ++++ + L A++R
Sbjct: 144 CWLCERSQEHRGHHTFL--VEEVAQEYQEKFQESLK-------KLKNEEQEAEKLTAFIR 194
Query: 179 AIRSVNPNLQNLEETIEYNEILEWVNSLQPARV---TRWGGMISTPDAVLQAVIKRSLVE 235
++ W N ++P R T + + + D V Q +K+ E
Sbjct: 195 EKKT------------------SWKNQMEPERCRIQTEFNQLRNILDRVEQRELKKLEQE 236
Query: 236 SGCPASIVNE 245
I+ E
Sbjct: 237 EKKGLRIIEE 246
Score = 43.1 bits (100), Expect = 3e-04
Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 46/214 (21%)
Query: 11 DVDEDLICPICSGVLEEPVQAPHCEHAFCNACIT-------QWFSQQQTCPVDRSVVTVA 63
+V E++ CPIC +L EP+ C H+ C ACIT + +CPV +
Sbjct: 362 NVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 420
Query: 64 HLRPVPRIMR--NMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQG-- 119
HL+ + L +++++ DN + +L H H K + C++
Sbjct: 421 HLQANQHLANIVERLKEVKLSPDNG--------KKRDLCDH-----HGEKLLLFCKEDRK 467
Query: 120 --CGLEMPKDELPNHN----------CIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQK 167
C L E H+ C + L++V+++ + E EK A+ + + K
Sbjct: 468 VICWLCERSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWK 527
Query: 168 RDIQL----LKAYMRAIRSVNPN-----LQNLEE 192
+Q ++ +RS+ N LQ LEE
Sbjct: 528 YQVQTERQRIQTEFDQLRSILNNEEQRELQRLEE 561
>gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens]
Length = 245
Score = 48.1 bits (113), Expect = 1e-05
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNAC-ITQWFSQQQTCPVDRSV 59
M D++ ++D CP+C VL+ PV+ C+H FC C +T CP+ R
Sbjct: 1 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGN 60
Query: 60 VTVAHLRPVPRI--MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCE 107
VT R + N++ K +C C+ ++ + H C+
Sbjct: 61 VTRRERACPERALDLENIMRKFSGSCR----CCAKQIKFYRMRHHYKSCK 106
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 47.4 bits (111), Expect = 2e-05
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 29/207 (14%)
Query: 11 DVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQ------QQTCPVDRSVVTVAH 64
+V E++ CPIC +L +P+ C H+FC AC+T + + +CPV R +
Sbjct: 8 NVKEEVTCPICLELLTQPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 66
Query: 65 LRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDC-EHNPKRPVTCEQG---- 119
+RP R + N++ KL+ V+L + C H K + C++
Sbjct: 67 IRP-NRHVANLVEKLR------------EVKLSPEGQKVDHCARHGEKLLLFCQEDGKVI 113
Query: 120 CGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKA-YMR 178
C L E H+ V Q+ Q ++ + + + + E + DI+ KA +
Sbjct: 114 CWLCERSQEHRGHHTFP-TEEVAQEYQVKLQAALEMLRQKQQEAEELEADIREEKASWKT 172
Query: 179 AIRSVNPNLQNLEETIEYNEILEWVNS 205
I+ N+ L + + +IL+W S
Sbjct: 173 QIQYDKTNV--LADFEQLRDILDWEES 197
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 47.4 bits (111), Expect = 2e-05
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 18 CPICSGVLEEPVQAPHCEHAFCNACITQWFS-QQQTCPVDRSVVTVAHLRPVPRIMRNML 76
CP+C V E+PVQ P C H FC+AC+ + ++ C V RS + P + L
Sbjct: 29 CPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSAL-------APGVRAVEL 80
Query: 77 SKLQIACDNAVFGCSAVVRLDNLMSHLSDC 106
+ + + + GC L + SH++ C
Sbjct: 81 ERQIESTETSCHGCRKNFFLSKIRSHVATC 110
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 46.6 bits (109), Expect = 3e-05
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 31/208 (14%)
Query: 11 DVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQ------QQTCPVDRSVVTVAH 64
+V E++ CPIC +L +P+ C H+FC AC+T + + +CPV R +
Sbjct: 8 NVKEEVTCPICLELLTQPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 66
Query: 65 LRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDC-EHNPKRPVTCEQG---- 119
+RP R + N++ KL+ V+L + C H K + C++
Sbjct: 67 IRP-NRHVANIVEKLR------------EVKLSPEGQKVDHCARHGEKLLLFCQEDGKVI 113
Query: 120 CGL-EMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKA-YM 177
C L E ++ +H + V Q+ Q ++ + + + + E + DI+ KA +
Sbjct: 114 CWLCERSQEHRGHHTFL--TEEVAQEYQVKLQAALEMLRQKQQEAEELEADIREEKASWK 171
Query: 178 RAIRSVNPNLQNLEETIEYNEILEWVNS 205
I+ N+ L + + +IL+W S
Sbjct: 172 TQIQYDKTNV--LADFEQLRDILDWEES 197
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 46.6 bits (109), Expect = 3e-05
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 31/208 (14%)
Query: 11 DVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQ------QQTCPVDRSVVTVAH 64
+V E++ CPIC +L +P+ C H+FC AC+T + + +CPV R +
Sbjct: 8 NVKEEVTCPICLELLTQPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 66
Query: 65 LRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDC-EHNPKRPVTCEQG---- 119
+RP R + N++ KL+ V+L + C H K + C++
Sbjct: 67 IRP-NRHVANIVEKLR------------EVKLSPEGQKVDHCARHGEKLLLFCQEDGKVI 113
Query: 120 CGL-EMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKA-YM 177
C L E ++ +H + V Q+ Q ++ + + + + E + DI+ KA +
Sbjct: 114 CWLCERSQEHRGHHTFL--TEEVAQEYQVKLQAALEMLRQKQQEAEELEADIREEKASWK 171
Query: 178 RAIRSVNPNLQNLEETIEYNEILEWVNS 205
I+ N+ L + + +IL+W S
Sbjct: 172 TQIQYDKTNV--LADFEQLRDILDWEES 197
>gi|117938316 tripartite motif-containing 22 [Homo sapiens]
Length = 498
Score = 46.2 bits (108), Expect = 4e-05
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 9/77 (11%)
Query: 11 DVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQ-------QQTCPVDRSVVTVA 63
D+++++ CPIC +L EP+ C H+FC ACIT + + +CPV ++
Sbjct: 8 DIEKEVTCPICLELLTEPLSL-DCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPG 66
Query: 64 HLRPVPRIMRNMLSKLQ 80
+LRP R + N++ +++
Sbjct: 67 NLRP-NRHLANIVERVK 82
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 45.8 bits (107), Expect = 5e-05
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 18 CPICSGVLEEPVQAPHCEHAFCNACI-TQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNML 76
C +C VL +PV+ C H FC +CI T + + TCP R+ + + P + + M
Sbjct: 37 CAVCLEVLHQPVRT-RCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGV-PATDVAKRMK 94
Query: 77 SKLQIACDNAVFGCSAVVRLDNLMSHLSDCE-----HNPKRPVTCEQG------CGLEMP 125
S+ + + C +V L + +H+ C+ + P + + C E+
Sbjct: 95 SEYKNCAE-----CDTLVCLSEMRAHIRTCQKYIDKYGPLQELEETAARCVCPFCQRELY 149
Query: 126 KDELPNHNCIKHLRS 140
+D L +H CI H RS
Sbjct: 150 EDSLLDH-CITHHRS 163
>gi|239048909 checkpoint with forkhead and ring finger domains
isoform 5 [Homo sapiens]
Length = 572
Score = 45.4 bits (106), Expect = 6e-05
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRI 71
++E L C IC +L + V C H FC AC + W + CP R PV RI
Sbjct: 206 MEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRC--------PVERI 257
Query: 72 MRN 74
+N
Sbjct: 258 CKN 260
>gi|239048905 checkpoint with forkhead and ring finger domains
isoform 3 [Homo sapiens]
Length = 652
Score = 45.4 bits (106), Expect = 6e-05
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRI 71
++E L C IC +L + V C H FC AC + W + CP R PV RI
Sbjct: 286 MEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRC--------PVERI 337
Query: 72 MRN 74
+N
Sbjct: 338 CKN 340
>gi|239048862 checkpoint with forkhead and ring finger domains
isoform 2 [Homo sapiens]
Length = 663
Score = 45.4 bits (106), Expect = 6e-05
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRI 71
++E L C IC +L + V C H FC AC + W + CP R PV RI
Sbjct: 298 MEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRC--------PVERI 349
Query: 72 MRN 74
+N
Sbjct: 350 CKN 352
>gi|239048792 checkpoint with forkhead and ring finger domains
isoform 1 [Homo sapiens]
Length = 664
Score = 45.4 bits (106), Expect = 6e-05
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRI 71
++E L C IC +L + V C H FC AC + W + CP R PV RI
Sbjct: 298 MEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRC--------PVERI 349
Query: 72 MRN 74
+N
Sbjct: 350 CKN 352
>gi|239048907 checkpoint with forkhead and ring finger domains
isoform 4 [Homo sapiens]
Length = 623
Score = 45.4 bits (106), Expect = 6e-05
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRI 71
++E L C IC +L + V C H FC AC + W + CP R PV RI
Sbjct: 257 MEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRC--------PVERI 308
Query: 72 MRN 74
+N
Sbjct: 309 CKN 311
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,972,825
Number of Sequences: 37866
Number of extensions: 502160
Number of successful extensions: 2309
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 2071
Number of HSP's gapped (non-prelim): 405
length of query: 317
length of database: 18,247,518
effective HSP length: 102
effective length of query: 215
effective length of database: 14,385,186
effective search space: 3092814990
effective search space used: 3092814990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.