Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TRAF4 Sequence: fasta or formatted (470aa) NCBI GI: 22027622
Description:

TNF receptor-associated factor 4

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         23           2
 C cysteine            6.4         30           1
 D aspartate           4.5         21           2
 E glutamate           6.8         32           2
 F phenylalanine       4.7         22           1
 G glycine             6.6         31           1
 H histidine           3.8         18           1
 I isoleucine          2.6         12           1
 K lysine              6.0         28           1
 L leucine            10.4         49           2
 M methionine          1.9          9           2
 N asparagine          2.8         13           1
 P proline             7.9         37           1
 Q glutamine           4.7         22           1
 R arginine            7.4         35           2
 S serine              6.2         29           2
 T threonine           3.4         16           1
 V valine              5.1         24           1
 W tryptophan          1.1          5           1
 Y tyrosine            3.0         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TNF receptor-associated factor 4 
TRAF2                 0.191   TNF receptor-associated factor 2 
TRAF6                 0.152   TNF receptor-associated factor 6 
TRAF6                 0.152   TNF receptor-associated factor 6 
TRAF3                 0.134   TNF receptor-associated factor 3 isoform 1 
TRAF3                 0.134   TNF receptor-associated factor 3 isoform 1 
TRAF5                 0.111   TNF receptor-associated factor 5 
TRAF5                 0.111   TNF receptor-associated factor 5 
TRAF5                 0.111   TNF receptor-associated factor 5 
TRAF3                 0.105   TNF receptor-associated factor 3 isoform 2 
TRAF1                 0.105   TNF receptor-associated factor 1 
RNF41                 0.046   ring finger protein 41 isoform 1 
RNF41                 0.046   ring finger protein 41 isoform 1 
RNF151                0.045   ring finger protein 151 
TRAF7                 0.045   TNF receptor-associated factor 7 
RNF166                0.038   ring finger protein 166 
MEP1B                 0.035   meprin A beta 
PDZRN3                0.033   PDZ domain containing ring finger 3 
XAF1                  0.028   XIAP associated factor 1 isoform 1 
MEP1A                 0.027   meprin A alpha 
ZNF266                0.024   zinc finger protein 266 
ZNF266                0.024   zinc finger protein 266 
RNF114                0.024   zinc finger protein 313 
XAF1                  0.024   XIAP associated factor 1 isoform 2 
LNX2                  0.024   ligand of numb-protein X 2 
ZSCAN10               0.022   zinc finger and SCAN domain containing 10 
ZKSCAN5               0.020   zinc finger with KRAB and SCAN domains 5 
ZKSCAN5               0.020   zinc finger with KRAB and SCAN domains 5 
TRAFD1                0.020   TRAF-type zinc finger domain containing 1 
TRAFD1                0.020   TRAF-type zinc finger domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press