Guide to the Human Genome
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Name: TRAF5 Sequence: fasta or formatted (557aa) NCBI GI: 11321603
Description:

TNF receptor-associated factor 5

Referenced in:

TNF and Related Signals

Other entries for this name:
alt mRNA [557aa] TNF receptor-associated factor 5
alt mRNA [557aa] TNF receptor-associated factor 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         26           1
 C cysteine            4.8         27           2
 D aspartate           4.8         27           2
 E glutamate           8.4         47           3
 F phenylalanine       4.7         26           1
 G glycine             3.9         22           1
 H histidine           4.1         23           1
 I isoleucine          4.1         23           2
 K lysine              8.4         47           2
 L leucine            10.4         58           2
 M methionine          1.8         10           1
 N asparagine          5.7         32           2
 P proline             3.6         20           1
 Q glutamine           6.5         36           3
 R arginine            4.8         27           2
 S serine              6.1         34           3
 T threonine           3.1         17           1
 V valine              6.5         36           3
 W tryptophan          0.5          3           1
 Y tyrosine            2.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TNF receptor-associated factor 5 
TRAF5                 1.000   TNF receptor-associated factor 5 
TRAF5                 1.000   TNF receptor-associated factor 5 
TRAF3                 0.383   TNF receptor-associated factor 3 isoform 1 
TRAF3                 0.383   TNF receptor-associated factor 3 isoform 1 
TRAF3                 0.350   TNF receptor-associated factor 3 isoform 2 
TRAF2                 0.238   TNF receptor-associated factor 2 
TRAF1                 0.165   TNF receptor-associated factor 1 
TRAF6                 0.137   TNF receptor-associated factor 6 
TRAF6                 0.137   TNF receptor-associated factor 6 
TRAF4                 0.097   TNF receptor-associated factor 4 
PDZRN3                0.045   PDZ domain containing ring finger 3 
RNF151                0.044   ring finger protein 151 
TRAF7                 0.037   TNF receptor-associated factor 7 
RNF166                0.028   ring finger protein 166 
RNF125                0.026   ring finger protein 125 
RNF41                 0.021   ring finger protein 41 isoform 1 
RNF41                 0.021   ring finger protein 41 isoform 1 
XAF1                  0.020   XIAP associated factor 1 isoform 2 
TRIM26                0.019   tripartite motif-containing 26 
XAF1                  0.018   XIAP associated factor 1 isoform 1 
HOOK1                 0.018   hook homolog 1 
LNX1                  0.018   ligand of numb-protein X 1 isoform a 
ERC1                  0.017   RAB6-interacting protein 2 isoform epsilon 
CCDC39                0.017   coiled-coil domain containing 39 
TRIM31                0.017   tripartite motif protein 31 
EEA1                  0.016   early endosome antigen 1, 162kD 
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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