Guide to the Human Genome
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Name: CHFR Sequence: fasta or formatted (664aa) NCBI GI: 239048792
Description:

checkpoint with forkhead and ring finger domains isoform 1

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [663aa] checkpoint with forkhead and ring finger domains isoform 2
alt prot [652aa] checkpoint with forkhead and ring finger domains isoform 3
alt prot [623aa] checkpoint with forkhead and ring finger domains isoform 4
alt prot [572aa] checkpoint with forkhead and ring finger domains isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         41           3
 C cysteine            5.4         36           2
 D aspartate           5.7         38           1
 E glutamate           7.2         48           2
 F phenylalanine       2.4         16           1
 G glycine             6.6         44           4
 H histidine           2.3         15           2
 I isoleucine          2.3         15           2
 K lysine              4.4         29           3
 L leucine             8.4         56           2
 M methionine          1.7         11           1
 N asparagine          3.3         22           3
 P proline             7.4         49           3
 Q glutamine           5.6         37           2
 R arginine            6.6         44           3
 S serine              9.2         61           3
 T threonine           5.6         37           2
 V valine              6.2         41           2
 W tryptophan          0.9          6           1
 Y tyrosine            2.7         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   checkpoint with forkhead and ring finger domains is... 
CHFR                  0.996   checkpoint with forkhead and ring finger domains is...
CHFR                  0.975   checkpoint with forkhead and ring finger domains is...
CHFR                  0.878   checkpoint with forkhead and ring finger domains is...
CHFR                  0.690   checkpoint with forkhead and ring finger domains is...
RNF8                  0.022   ring finger protein 8 isoform 1 
TRIM65                0.020   tripartite motif-containing 65 
TRIM35                0.019   tripartite motif-containing 35 isoform 2 
PCGF3                 0.018   ring finger protein 3 
DZIP3                 0.018   DAZ interacting protein 3, zinc finger 
PCGF6                 0.018   polycomb group ring finger 6 isoform a 
TRIM3                 0.018   tripartite motif-containing 3 
TRIM3                 0.018   tripartite motif-containing 3 
PCGF1                 0.017   polycomb group ring finger 1 
RNF165                0.016   ring finger protein 165 
RNF166                0.016   ring finger protein 166 
RFWD2                 0.016   ring finger and WD repeat domain 2 isoform d24 [Homo...
PCGF6                 0.016   polycomb group ring finger 6 isoform b 
SYVN1                 0.015   synoviolin 1 isoform b 
SYVN1                 0.015   synoviolin 1 isoform a 
LNX1                  0.015   ligand of numb-protein X 1 isoform a 
DTX3L                 0.015   deltex 3-like 
LONRF3                0.015   LON peptidase N-terminal domain and ring finger 3 is...
LONRF3                0.015   LON peptidase N-terminal domain and ring finger 3 is...
TRIM13                0.015   ret finger protein 2 isoform 2 
TRIM13                0.015   ret finger protein 2 isoform 1 
TRIM13                0.015   ret finger protein 2 isoform 1 
TRIM13                0.015   ret finger protein 2 isoform 1 
RNF135                0.015   ring finger protein 135 isoform 2 
RNF135                0.015   ring finger protein 135 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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