Guide to the Human Genome
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Name: RNF41 Sequence: fasta or formatted (317aa) NCBI GI: 5032071
Description:

ring finger protein 41 isoform 1

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [246aa] ring finger protein 41 isoform 2
alt mRNA [317aa] ring finger protein 41 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         22           1
 C cysteine            4.4         14           1
 D aspartate           4.1         13           2
 E glutamate           8.5         27           2
 F phenylalanine       1.6          5           1
 G glycine             4.4         14           2
 H histidine           3.8         12           1
 I isoleucine          5.7         18           1
 K lysine              3.5         11           1
 L leucine             7.9         25           2
 M methionine          3.8         12           1
 N asparagine          5.4         17           1
 P proline             5.4         17           1
 Q glutamine           7.3         23           4
 R arginine            6.3         20           2
 S serine              5.0         16           1
 T threonine           3.8         12           1
 V valine              9.1         29           3
 W tryptophan          1.3          4           1
 Y tyrosine            1.9          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 41 isoform 1 
RNF41                 1.000   ring finger protein 41 isoform 1 
RNF41                 0.757   ring finger protein 41 isoform 2 
PDZRN3                0.116   PDZ domain containing ring finger 3 
RNF151                0.097   ring finger protein 151 
TRAF4                 0.072   TNF receptor-associated factor 4 
LNX1                  0.059   ligand of numb-protein X 1 isoform a 
LNX2                  0.056   ligand of numb-protein X 2 
TRAF6                 0.054   TNF receptor-associated factor 6 
TRAF6                 0.054   TNF receptor-associated factor 6 
RNFT1                 0.043   PTD016 protein 
TRAF5                 0.038   TNF receptor-associated factor 5 
TRAF5                 0.038   TNF receptor-associated factor 5 
TRAF5                 0.038   TNF receptor-associated factor 5 
PCGF3                 0.038   ring finger protein 3 
TRIM6                 0.038   tripartite motif-containing 6 isoform 2 
TRIM6                 0.038   tripartite motif-containing 6 isoform 1 
TRIM6-TRIM34          0.038   tripartite motif-containing 6 and tripartite motif-c...
RNF138                0.037   ring finger protein 138 isoform 1 
TRIM5                 0.035   tripartite motif protein TRIM5 isoform alpha 
RNF114                0.035   zinc finger protein 313 
TRIM5                 0.035   tripartite motif protein TRIM5 isoform delta 
TRIM5                 0.035   tripartite motif protein TRIM5 isoform gamma 
TRIM22                0.033   tripartite motif-containing 22 
RNF125                0.033   ring finger protein 125 
CHFR                  0.032   checkpoint with forkhead and ring finger domains is...
CHFR                  0.032   checkpoint with forkhead and ring finger domains is...
CHFR                  0.032   checkpoint with forkhead and ring finger domains is...
CHFR                  0.032   checkpoint with forkhead and ring finger domains is...
CHFR                  0.032   checkpoint with forkhead and ring finger domains is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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