Guide to the Human Genome
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Name: TRAF6 Sequence: fasta or formatted (522aa) NCBI GI: 22027630
Description:

TNF receptor-associated factor 6

Referenced in:

Coiled-Coil Proteins
MAP Kinase Pathways
MicroRNAs
TNF and Related Signals
Toll-like Receptors

Other entries for this name:
alt mRNA [522aa] TNF receptor-associated factor 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         29           2
 C cysteine            5.7         30           2
 D aspartate           5.0         26           2
 E glutamate           7.9         41           3
 F phenylalanine       4.2         22           1
 G glycine             4.6         24           2
 H histidine           4.6         24           1
 I isoleucine          5.9         31           2
 K lysine              4.4         23           1
 L leucine             8.4         44           2
 M methionine          3.8         20           1
 N asparagine          4.0         21           1
 P proline             5.4         28           2
 Q glutamine           6.1         32           2
 R arginine            5.9         31           2
 S serine              6.5         34           3
 T threonine           4.8         25           1
 V valine              4.4         23           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TNF receptor-associated factor 6 
TRAF6                 1.000   TNF receptor-associated factor 6 
TRAF2                 0.162   TNF receptor-associated factor 2 
TRAF4                 0.160   TNF receptor-associated factor 4 
TRAF3                 0.158   TNF receptor-associated factor 3 isoform 1 
TRAF3                 0.158   TNF receptor-associated factor 3 isoform 1 
TRAF5                 0.145   TNF receptor-associated factor 5 
TRAF5                 0.145   TNF receptor-associated factor 5 
TRAF5                 0.145   TNF receptor-associated factor 5 
TRAF3                 0.138   TNF receptor-associated factor 3 isoform 2 
TRAF1                 0.075   TNF receptor-associated factor 1 
RNF151                0.038   ring finger protein 151 
PDZRN3                0.037   PDZ domain containing ring finger 3 
RNF41                 0.032   ring finger protein 41 isoform 1 
RNF41                 0.032   ring finger protein 41 isoform 1 
TRAF7                 0.030   TNF receptor-associated factor 7 
RNF125                0.030   ring finger protein 125 
XAF1                  0.029   XIAP associated factor 1 isoform 1 
TRIM8                 0.027   tripartite motif-containing 8 
XAF1                  0.025   XIAP associated factor 1 isoform 2 
RAG1                  0.024   recombination activating gene 1 
LNX1                  0.024   ligand of numb-protein X 1 isoform a 
RNF114                0.024   zinc finger protein 313 
TRIM22                0.023   tripartite motif-containing 22 
LONRF2                0.022   LON peptidase N-terminal domain and ring finger 2 [...
RFWD2                 0.022   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.022   ring finger and WD repeat domain 2 isoform d24 [Homo...
MEP1A                 0.021   meprin A alpha 
LONRF1                0.021   LON peptidase N-terminal domain and ring finger 1 [H...
TRIM40                0.021   tripartite motif-containing 40 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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