Guide to the Human Genome
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Name: RNF114 Sequence: fasta or formatted (228aa) NCBI GI: 8923898
Description:

zinc finger protein 313

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         17           2
 C cysteine            7.5         17           1
 D aspartate           5.3         12           1
 E glutamate           6.6         15           2
 F phenylalanine       4.4         10           2
 G glycine             4.8         11           2
 H histidine           3.1          7           1
 I isoleucine          3.5          8           2
 K lysine              5.3         12           2
 L leucine             5.3         12           1
 M methionine          2.2          5           2
 N asparagine          3.5          8           1
 P proline             7.0         16           1
 Q glutamine           5.7         13           2
 R arginine            6.6         15           2
 S serine              6.1         14           1
 T threonine           3.9          9           1
 V valine              7.9         18           2
 W tryptophan          0.4          1           1
 Y tyrosine            3.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 313 
RNF166                0.408   ring finger protein 166 
RNF138                0.233   ring finger protein 138 isoform 1 
RNF125                0.231   ring finger protein 125 
RNF138                0.138   ring finger protein 138 isoform 2 
KCMF1                 0.082   potassium channel modulatory factor 1 
TRIM21                0.058   tripartite motif protein 21 
TRAF6                 0.056   TNF receptor-associated factor 6 
TRAF6                 0.056   TNF receptor-associated factor 6 
LONRF1                0.056   LON peptidase N-terminal domain and ring finger 1 [H...
TRIM65                0.056   tripartite motif-containing 65 
TRIM7                 0.054   tripartite motif-containing 7 isoform 1 
TRIM7                 0.054   tripartite motif-containing 7 isoform 4 
TRIM22                0.052   tripartite motif-containing 22 
TRIM50                0.052   tripartite motif protein 50A 
TRIM47                0.052   tripartite motif-containing 47 
LONRF2                0.052   LON peptidase N-terminal domain and ring finger 2 [...
TRAF4                 0.052   TNF receptor-associated factor 4 
TRIM5                 0.052   tripartite motif protein TRIM5 isoform alpha 
TRIM5                 0.052   tripartite motif protein TRIM5 isoform delta 
TRIM5                 0.052   tripartite motif protein TRIM5 isoform gamma 
LONRF3                0.052   LON peptidase N-terminal domain and ring finger 3 is...
LONRF3                0.052   LON peptidase N-terminal domain and ring finger 3 is...
RNF5                  0.050   ring finger protein 5 
TRIM25                0.050   tripartite motif-containing 25 
RNF41                 0.048   ring finger protein 41 isoform 1 
RNF41                 0.048   ring finger protein 41 isoform 1 
RNF4                  0.048   ring finger protein 4 
TRIM6                 0.048   tripartite motif-containing 6 isoform 2 
TRIM6                 0.048   tripartite motif-containing 6 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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