Guide to the Human Genome
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Name: HSFY1 Sequence: fasta or formatted (203aa) NCBI GI: 24211017
Description:

heat shock transcription factor, Y-linked 1 isoform 2

Referenced in:

Heat-Shock Proteins and Chaperonins
Y-linked Genes

Other entries for this name:
alt prot [401aa] heat shock transcription factor, Y-linked 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          8           1
 C cysteine            2.5          5           2
 D aspartate           5.9         12           3
 E glutamate           9.4         19           2
 F phenylalanine       6.4         13           1
 G glycine             2.0          4           1
 H histidine           2.0          4           1
 I isoleucine          4.9         10           1
 K lysine              7.4         15           2
 L leucine             9.9         20           2
 M methionine          1.5          3           1
 N asparagine          3.9          8           1
 P proline             3.4          7           1
 Q glutamine           4.4          9           2
 R arginine            4.4          9           1
 S serine             14.3         29           2
 T threonine           5.4         11           1
 V valine              4.4          9           1
 W tryptophan          1.0          2           1
 Y tyrosine            3.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock transcription factor, Y-linked 1 isoform ... 
HSFY2                 1.000   heat shock transcription factor, Y linked 2 isoform ...
HSFY1                 0.838   heat shock transcription factor, Y-linked 1 isoform ...
HSFY2                 0.838   heat shock transcription factor, Y linked 2 isoform ...
HSFX2                 0.230   PREDICTED: heat shock transcription factor family, ...
HSFX1                 0.230   heat shock transcription factor family, X linked 1 [H...
LOC100133153          0.194   PREDICTED: similar to heat shock transcription fact...
LOC100133153          0.194   PREDICTED: similar to heat shock transcription fact...
HSF5                  0.113   heat shock transcription factor family member 5 [Ho...
HSF2                  0.068   heat shock transcription factor 2 isoform b 
HSF2                  0.068   heat shock transcription factor 2 isoform a 
HSF1                  0.045   heat shock transcription factor 1 
HSF4                  0.045   heat shock transcription factor 4 isoform b 
HSF4                  0.045   heat shock transcription factor 4 isoform a 
FRMD3                 0.008   FERM domain containing 3 
ATG5                  0.005   APG5 autophagy 5-like 
AGBL1                 0.005   ATP/GTP binding protein-like 1 
MAP1B                 0.005   microtubule-associated protein 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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