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Search of human proteins with 50233814
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
sapiens]
(571 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ... 1167 0.0
gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo ... 1101 0.0
gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo... 819 0.0
gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo... 819 0.0
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ... 819 0.0
gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo ... 393 e-109
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 45 1e-04
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 45 1e-04
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 40 0.006
gi|122937382 Fas (TNFRSF6) binding factor 1 [Homo sapiens] 40 0.008
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 39 0.010
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 39 0.010
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens] 39 0.017
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens] 38 0.029
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 37 0.037
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 37 0.049
gi|193788659 cleavage and polyadenylation specific factor 4-like... 37 0.064
gi|104526627 triadin [Homo sapiens] 36 0.083
gi|156142192 hypothetical protein LOC51306 isoform 3 [Homo sapiens] 36 0.11
gi|156142190 hypothetical protein LOC51306 isoform 2 [Homo sapiens] 36 0.11
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens] 35 0.14
gi|21536423 amphiphysin isoform 2 [Homo sapiens] 35 0.14
gi|4502081 amphiphysin isoform 1 [Homo sapiens] 35 0.14
gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens] 35 0.14
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 35 0.19
gi|33667044 ABI gene family, member 3 (NESH) binding protein [Ho... 35 0.19
gi|91982772 mucin 17 [Homo sapiens] 35 0.19
gi|34304336 ring finger protein 8 isoform 2 [Homo sapiens] 35 0.24
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens] 35 0.24
gi|41152076 steroid-sensitive protein 1 [Homo sapiens] 35 0.24
>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
sapiens]
Length = 571
Score = 1167 bits (3019), Expect = 0.0
Identities = 571/571 (100%), Positives = 571/571 (100%)
Query: 1 MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN 60
MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN
Sbjct: 1 MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN 60
Query: 61 VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR 120
VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR
Sbjct: 61 VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR 120
Query: 121 LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI 180
LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI
Sbjct: 121 LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI 180
Query: 181 YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS 240
YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS
Sbjct: 181 YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS 240
Query: 241 PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV 300
PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV
Sbjct: 241 PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV 300
Query: 301 PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL 360
PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL
Sbjct: 301 PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL 360
Query: 361 LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQAEM 420
LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQAEM
Sbjct: 361 LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQAEM 420
Query: 421 SELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDA 480
SELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDA
Sbjct: 421 SELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDA 480
Query: 481 KCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT 540
KCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT
Sbjct: 481 KCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT 540
Query: 541 QCTRPDCTFYHPTINVPPRHALKWIRPQTSE 571
QCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 541 QCTRPDCTFYHPTINVPPRHALKWIRPQTSE 571
>gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo
sapiens]
Length = 579
Score = 1101 bits (2847), Expect = 0.0
Identities = 545/571 (95%), Positives = 545/571 (95%), Gaps = 26/571 (4%)
Query: 1 MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN 60
MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN
Sbjct: 35 MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN 94
Query: 61 VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR 120
VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR
Sbjct: 95 VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR 154
Query: 121 LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI 180
LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI
Sbjct: 155 LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI 214
Query: 181 YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS 240
YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS
Sbjct: 215 YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS 274
Query: 241 PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV 300
PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV
Sbjct: 275 PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV 334
Query: 301 PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL 360
PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL
Sbjct: 335 PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL 394
Query: 361 LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQAEM 420
LAEVVQGQSRTPRISPPIKEEETKGDSVEKN QAEM
Sbjct: 395 LAEVVQGQSRTPRISPPIKEEETKGDSVEKN-------------------------QAEM 429
Query: 421 SELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDA 480
SELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDA
Sbjct: 430 SELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDA 489
Query: 481 KCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT 540
KCTKPDCPFTHVSRRIPVLSPKP VAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT
Sbjct: 490 KCTKPDCPFTHVSRRIPVLSPKP-VAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT 548
Query: 541 QCTRPDCTFYHPTINVPPRHALKWIRPQTSE 571
QCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 549 QCTRPDCTFYHPTINVPPRHALKWIRPQTSE 579
>gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo
sapiens]
Length = 730
Score = 819 bits (2115), Expect = 0.0
Identities = 417/417 (100%), Positives = 417/417 (100%)
Query: 1 MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN 60
MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN
Sbjct: 35 MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN 94
Query: 61 VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR 120
VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR
Sbjct: 95 VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR 154
Query: 121 LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI 180
LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI
Sbjct: 155 LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI 214
Query: 181 YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS 240
YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS
Sbjct: 215 YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS 274
Query: 241 PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV 300
PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV
Sbjct: 275 PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV 334
Query: 301 PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL 360
PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL
Sbjct: 335 PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL 394
Query: 361 LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQ 417
LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQ
Sbjct: 395 LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQ 451
Score = 350 bits (899), Expect = 2e-96
Identities = 161/177 (90%), Positives = 161/177 (90%), Gaps = 10/177 (5%)
Query: 395 QQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPI 454
QQ LLSR DP AEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPI
Sbjct: 564 QQLHLLSRQLEDP---------NAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPI 614
Query: 455 SPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSS 514
SPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKP VAPPAPPSSS
Sbjct: 615 SPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKP-VAPPAPPSSS 673
Query: 515 QLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 571
QLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 674 QLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 730
>gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo
sapiens]
Length = 735
Score = 819 bits (2115), Expect = 0.0
Identities = 417/417 (100%), Positives = 417/417 (100%)
Query: 1 MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN 60
MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN
Sbjct: 35 MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN 94
Query: 61 VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR 120
VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR
Sbjct: 95 VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR 154
Query: 121 LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI 180
LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI
Sbjct: 155 LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI 214
Query: 181 YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS 240
YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS
Sbjct: 215 YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS 274
Query: 241 PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV 300
PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV
Sbjct: 275 PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV 334
Query: 301 PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL 360
PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL
Sbjct: 335 PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL 394
Query: 361 LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQ 417
LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQ
Sbjct: 395 LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQ 451
Score = 352 bits (904), Expect = 4e-97
Identities = 162/177 (91%), Positives = 162/177 (91%), Gaps = 5/177 (2%)
Query: 395 QQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPI 454
QQ LLSR DP S AEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPI
Sbjct: 564 QQLHLLSRQLEDP----NGSFSNAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPI 619
Query: 455 SPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSS 514
SPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKP VAPPAPPSSS
Sbjct: 620 SPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKP-VAPPAPPSSS 678
Query: 515 QLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 571
QLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 679 QLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 735
>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
sapiens]
Length = 736
Score = 819 bits (2115), Expect = 0.0
Identities = 417/417 (100%), Positives = 417/417 (100%)
Query: 1 MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN 60
MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN
Sbjct: 35 MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN 94
Query: 61 VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR 120
VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR
Sbjct: 95 VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR 154
Query: 121 LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI 180
LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI
Sbjct: 155 LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI 214
Query: 181 YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS 240
YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS
Sbjct: 215 YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS 274
Query: 241 PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV 300
PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV
Sbjct: 275 PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV 334
Query: 301 PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL 360
PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL
Sbjct: 335 PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL 394
Query: 361 LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQ 417
LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQ
Sbjct: 395 LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQ 451
Score = 358 bits (920), Expect = 6e-99
Identities = 163/177 (92%), Positives = 163/177 (92%), Gaps = 4/177 (2%)
Query: 395 QQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPI 454
QQ LLSR DP S AEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPI
Sbjct: 564 QQLHLLSRQLEDP----NGSFSNAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPI 619
Query: 455 SPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSS 514
SPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSS
Sbjct: 620 SPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSS 679
Query: 515 QLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 571
QLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 680 QLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 736
>gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo
sapiens]
Length = 306
Score = 393 bits (1010), Expect = e-109
Identities = 181/185 (97%), Positives = 182/185 (98%), Gaps = 3/185 (1%)
Query: 387 SVEKNQGTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGD 446
+VEK GTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGD
Sbjct: 125 NVEK--GTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGD 182
Query: 447 ECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPAVA 506
ECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKP VA
Sbjct: 183 ECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKP-VA 241
Query: 507 PPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIR 566
PPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIR
Sbjct: 242 PPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIR 301
Query: 567 PQTSE 571
PQTSE
Sbjct: 302 PQTSE 306
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/129 (24%), Positives = 46/129 (35%), Gaps = 31/129 (24%)
Query: 436 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 493
CK+W CK GD+C + H K P C F K +C+ +CPF H+
Sbjct: 68 CKHWLRGLCKKGDQCEFLHEYDMTK-MPECYFYSKF----------GECSNKECPFLHID 116
Query: 494 RRIPVLSPKPAVAPPAPPSSSQLCRYFPAC-----KKMECPFYHPKHCRFNTQCTRPDCT 548
+ P C++ P C +++ C Y C P C
Sbjct: 117 PESKI--------KDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCP-----EGPSCK 163
Query: 549 FYHPTINVP 557
F HP +P
Sbjct: 164 FMHPRFELP 172
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/129 (24%), Positives = 46/129 (35%), Gaps = 31/129 (24%)
Query: 436 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 493
CK+W CK GD+C + H K P C F K +C+ +CPF H+
Sbjct: 68 CKHWLRGLCKKGDQCEFLHEYDMTK-MPECYFYSKF----------GECSNKECPFLHID 116
Query: 494 RRIPVLSPKPAVAPPAPPSSSQLCRYFPAC-----KKMECPFYHPKHCRFNTQCTRPDCT 548
+ P C++ P C +++ C Y C P C
Sbjct: 117 PESKI--------KDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCP-----EGPSCK 163
Query: 549 FYHPTINVP 557
F HP +P
Sbjct: 164 FMHPRFELP 172
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 40.0 bits (92), Expect = 0.006
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 397 RQLLSRLQIDPVMAETLQM-SQAEMSELSVA----QKPEKLLERCKYWPA---CKNGDEC 448
R LL ++DP + + + S+A L++ Q+ EK E C Y+ C G+ C
Sbjct: 629 RPLLRTGRLDPAGSCSRSLASRAVQRSLAIIRQARQRREKRKEYCMYYNRFGRCNRGERC 688
Query: 449 AYHHP---ISPCKAFPN--CKFAE-KCLFVH-------PNCKYDAK--CTKPDCPFTH-- 491
Y H ++ C F CK + C F H P C Y K C+ +CP++H
Sbjct: 689 PYIHDPEKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLKGICSNSNCPYSHVY 748
Query: 492 VSRRIPVLS 500
VSR+ V S
Sbjct: 749 VSRKAEVCS 757
>gi|122937382 Fas (TNFRSF6) binding factor 1 [Homo sapiens]
Length = 1133
Score = 39.7 bits (91), Expect = 0.008
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 288 GSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTL 347
G+ G +S++ P + PS L ES+ ++ ST QKQ L
Sbjct: 514 GTAPGDLSATEPATCFPSTQKPTEPSVPVQPLL--------PESLARSLLPSTEYQKQLL 565
Query: 348 PVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDP 407
+ + S EL AE++ Q+R + +++ E + E G+ Q+Q Q D
Sbjct: 566 AAQVQLQCSPAELQAELLHSQARLAELEAQVRKLELERAQHELLLGSLQQQ----HQADL 621
Query: 408 VMAETLQMSQAEMSELSVAQKPEKLLER-----CKYWPACKNGDE 447
+ E+ S+ ++ E S Q+ E+L +Y C+ ++
Sbjct: 622 ELIESAHRSRIKVLETSYQQREERLRRENEELSARYLSQCQEAEQ 666
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 39.3 bits (90), Expect = 0.010
Identities = 64/328 (19%), Positives = 123/328 (37%), Gaps = 54/328 (16%)
Query: 159 PLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSS 218
PL +P +T++ +P +E + ++Q + + I K D +S
Sbjct: 422 PLYTHRPPITISSKIQKPKVEAPKL-------------KVQHKFVEEIIEETKVEDEKSE 468
Query: 219 WVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVKVK-----K 273
+ E E+ S++E E+ E+E +K PV ++ +VK K
Sbjct: 469 MEEALTAITE-ELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEK 527
Query: 274 FNHDGEEEEEDDDYGSR--------------------------TGSISSSVSVPAKPERR 307
+G+EEEE++D G++ T + + AK E++
Sbjct: 528 EEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKK 587
Query: 308 PSLPPSKQANK-NLILKAISEAQESVTKTTNYSTVPQKQTLPV--APRTRTSQEELLAEV 364
+ A K L+ A E E S V +K PV +P + +
Sbjct: 588 VEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSP 647
Query: 365 VQGQSRTPRISPPIKEE----ETKGDSVEKNQGTQQRQLL--SRLQIDPVMAETLQMSQA 418
V+ + ++P P++E+ +K EK + + + ++ + + E + +
Sbjct: 648 VEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEK 707
Query: 419 EMSELSVAQKPEKLLERCKYWPACKNGD 446
E+ E +K EK E+ K P K +
Sbjct: 708 EVKEAPKEEKVEKKEEKPKDVPEKKKAE 735
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 39.3 bits (90), Expect = 0.010
Identities = 64/328 (19%), Positives = 123/328 (37%), Gaps = 54/328 (16%)
Query: 159 PLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSS 218
PL +P +T++ +P +E + ++Q + + I K D +S
Sbjct: 46 PLYTHRPPITISSKIQKPKVEAPKL-------------KVQHKFVEEIIEETKVEDEKSE 92
Query: 219 WVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVKVK-----K 273
+ E E+ S++E E+ E+E +K PV ++ +VK K
Sbjct: 93 MEEALTAITE-ELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEK 151
Query: 274 FNHDGEEEEEDDDYGSR--------------------------TGSISSSVSVPAKPERR 307
+G+EEEE++D G++ T + + AK E++
Sbjct: 152 EEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKK 211
Query: 308 PSLPPSKQANK-NLILKAISEAQESVTKTTNYSTVPQKQTLPV--APRTRTSQEELLAEV 364
+ A K L+ A E E S V +K PV +P + +
Sbjct: 212 VEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSP 271
Query: 365 VQGQSRTPRISPPIKEE----ETKGDSVEKNQGTQQRQLL--SRLQIDPVMAETLQMSQA 418
V+ + ++P P++E+ +K EK + + + ++ + + E + +
Sbjct: 272 VEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEK 331
Query: 419 EMSELSVAQKPEKLLERCKYWPACKNGD 446
E+ E +K EK E+ K P K +
Sbjct: 332 EVKEAPKEEKVEKKEEKPKDVPEKKKAE 359
>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
Length = 895
Score = 38.5 bits (88), Expect = 0.017
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Query: 218 SWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHD 277
S+ Y G +P V + + Y F N+ + + E + P ++ + +
Sbjct: 662 SFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSEE 721
Query: 278 GEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLIL--KAISEAQESVTKT 335
EEEE D+D TG I+ + S P S+P + + + L K I EA +
Sbjct: 722 EEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETP 781
Query: 336 TNYSTVPQKQTLPV 349
++ +P+K+T V
Sbjct: 782 QLFTVLPEKRTATV 795
>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
Length = 291
Score = 37.7 bits (86), Expect = 0.029
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 19/93 (20%)
Query: 415 MSQAEMSELSVAQKPEKLLERCKYW--PACKNGDECAYHHPISPCKAFPNCKF------- 465
+SQA +++ +V +K +++ CKY+ C GD+C + H K CKF
Sbjct: 179 LSQAFINQHTVERKGKQI---CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCT 235
Query: 466 -AEKCLFVHPN--CKY---DAKCTKPD-CPFTH 491
E CL++H CK+ KC + + C F+H
Sbjct: 236 RGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSH 268
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 37.4 bits (85), Expect = 0.037
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 19/93 (20%)
Query: 415 MSQAEMSELSVAQKPEKLLERCKYW--PACKNGDECAYHHPISPCKAFPNCKF------- 465
M+Q +++ +V K +++ CKY+ C GD+C + H K CKF
Sbjct: 260 MTQEFINQHTVEHKGKQI---CKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCT 316
Query: 466 -AEKCLFVHPN--CKY---DAKCTKPD-CPFTH 491
E C+++H CK+ AKC + D C F+H
Sbjct: 317 KGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSH 349
Score = 33.5 bits (75), Expect = 0.54
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 430 EKLLERCKYWPA--CKNGDECAYHHPISPCKAF---PNCKFAEKCLFVHPNCKYDAK 481
EK E CK++ C G+ C Y H PCK + C + C F H + + K
Sbjct: 301 EKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSHDDLTKETK 357
Score = 29.6 bits (65), Expect = 7.8
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 336 TNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD---SVEKNQ 392
T + +P LP R + + + Q+ T P KEE+ + S E+ +
Sbjct: 650 TGHGPLPVPGLLPAVQRALFVRLTQRYQEDEEQTSTQPHRAPSKEEDDTVNWYSSSEEEE 709
Query: 393 GTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCK 437
G+ + +L LQ ETL+ Q +ELS P E+ K
Sbjct: 710 GSSVKSILKTLQ---KQTETLRNQQQPSTELSTPTDPRLAKEKSK 751
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 37.0 bits (84), Expect = 0.049
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 436 CKYWP--ACKNGDECAYHHPISPCKAFPNCKFAEK--CLFVHPNCKYDAKCTKPDCPFTH 491
C+Y+ C+ G +C + H ++ K CK+ +K C + C+YD T+P
Sbjct: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAY-GTRCRYDH--TRPSAAAGG 64
Query: 492 VSRRIPVLSPKPAVAPPAPPS 512
+ P PA P PPS
Sbjct: 65 AVGTMAHSVPSPAFHSPHPPS 85
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 36.6 bits (83), Expect = 0.064
Identities = 26/109 (23%), Positives = 34/109 (31%), Gaps = 40/109 (36%)
Query: 436 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 493
CK+W CK GD C + H + P C F K C+ +C F HV
Sbjct: 68 CKHWLRGLCKKGDHCKFLHQYDLTR-MPECYFYSKF----------GDCSNKECSFLHVK 116
Query: 494 RRIPVLSPKPAVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQC 542
PA K +CP+Y C+ C
Sbjct: 117 ---------------------------PAFKSQDCPWYDQGFCKDGPLC 138
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 36.2 bits (82), Expect = 0.083
Identities = 63/322 (19%), Positives = 120/322 (37%), Gaps = 45/322 (13%)
Query: 136 DVIDIKPEPDDLIDEDLNF--VQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGV 193
D+I + E DD DED + + E PL +K+ T +P +I + + G
Sbjct: 112 DIISSEDEEDDDGDEDTDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKVTHKEKEKGK 171
Query: 194 HLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSME 253
R + + ++ + H K ++ ET L + E+ + + EK E
Sbjct: 172 EKVREKEKPEKKATHKEK---IEKKEKPETKTLAK-------EQKKAKTAEKSEEKTKKE 221
Query: 254 DENFRKRKLPVVSSVVKVKKFNHDGEEEEED------------DDYGSRTGSISSSVSVP 301
+ ++ K+ ++ VK + +E+ED D Y I V
Sbjct: 222 VKGGKQEKVKQTAAKVKEVQKTPSKPKEKEDKEKAAVSKHEQKDQYAFCRYMIDIFVHGD 281
Query: 302 AKPERRPSLP---PSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQE 358
KP + P++P P++QA++ E +E K + + + S++
Sbjct: 282 LKPGQSPAIPPPLPTEQASRPTPASPALEEKEGEKKKAEKKVTSETKKKEKEDIKKKSEK 341
Query: 359 ELLAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAE---TLQM 415
E +V E++ G + E QGT + + + D + T +
Sbjct: 342 ETAIDV---------------EKKEPGKASETKQGTVKIAAQAAAKKDEKKEDSKKTKKP 386
Query: 416 SQAEMSELSVAQKPEKLLERCK 437
++ E + +K EK +E K
Sbjct: 387 AEVEQPKGKKQEKKEKHVEPAK 408
>gi|156142192 hypothetical protein LOC51306 isoform 3 [Homo sapiens]
Length = 791
Score = 35.8 bits (81), Expect = 0.11
Identities = 68/318 (21%), Positives = 119/318 (37%), Gaps = 65/318 (20%)
Query: 155 VQENPLSQKKPTV----TLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNSIHAA 210
+ +PL + P V +L +G S+ P ++ S L F + + S ++
Sbjct: 411 MNHHPLEEDCPPVLSHRSLDFGQSQ---RFLHDPEKLDSSS----KALSFTRIRRSSFSS 463
Query: 211 KQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVK 270
K + Y+ + + ++ E+ F R + K S D + L ++ + K
Sbjct: 464 KDEKREDRTPYQLVKKLQKKIRQFEEQ----FERERNSKPSYSDIAANPKVLKWMTELTK 519
Query: 271 VKKFNHDGEEEEEDDDYGSRTGSISSSV------SVPAKPERRPSLP--------PSKQA 316
++K D + + D ++ +T S+++ S+ + E P PSK+A
Sbjct: 520 LRKQIKDAKHKNSDGEFVPQTRPRSNTLPKSFGSSLDHEDEENEDEPKVIQKEKKPSKEA 579
Query: 317 NKNLILKAISEAQ--------ESVTKTTNYSTVP-------QKQTL------PVAPRTRT 355
LILK + E + VTK + P KQ L PV T
Sbjct: 580 TLELILKRLKEKRIERCLPEDIKVTKEERHIVKPLYDRYRLVKQMLTRASITPVLGSPST 639
Query: 356 SQE-ELLAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQ 414
+ ++L +++G+ T IKEEE G ++ G D +
Sbjct: 640 KRRGQMLQPIIEGE--TAHFFEEIKEEEEDGVNLSSELG------------DMLKTAVQV 685
Query: 415 MSQAEMSELSVAQKPEKL 432
S E SE V + EKL
Sbjct: 686 QSSLENSESDVEENQEKL 703
>gi|156142190 hypothetical protein LOC51306 isoform 2 [Homo sapiens]
Length = 887
Score = 35.8 bits (81), Expect = 0.11
Identities = 68/318 (21%), Positives = 119/318 (37%), Gaps = 65/318 (20%)
Query: 155 VQENPLSQKKPTV----TLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNSIHAA 210
+ +PL + P V +L +G S+ P ++ S L F + + S ++
Sbjct: 507 MNHHPLEEDCPPVLSHRSLDFGQSQ---RFLHDPEKLDSSS----KALSFTRIRRSSFSS 559
Query: 211 KQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVK 270
K + Y+ + + ++ E+ F R + K S D + L ++ + K
Sbjct: 560 KDEKREDRTPYQLVKKLQKKIRQFEEQ----FERERNSKPSYSDIAANPKVLKWMTELTK 615
Query: 271 VKKFNHDGEEEEEDDDYGSRTGSISSSV------SVPAKPERRPSLP--------PSKQA 316
++K D + + D ++ +T S+++ S+ + E P PSK+A
Sbjct: 616 LRKQIKDAKHKNSDGEFVPQTRPRSNTLPKSFGSSLDHEDEENEDEPKVIQKEKKPSKEA 675
Query: 317 NKNLILKAISEAQ--------ESVTKTTNYSTVP-------QKQTL------PVAPRTRT 355
LILK + E + VTK + P KQ L PV T
Sbjct: 676 TLELILKRLKEKRIERCLPEDIKVTKEERHIVKPLYDRYRLVKQMLTRASITPVLGSPST 735
Query: 356 SQE-ELLAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQ 414
+ ++L +++G+ T IKEEE G ++ G D +
Sbjct: 736 KRRGQMLQPIIEGE--TAHFFEEIKEEEEDGVNLSSELG------------DMLKTAVQV 781
Query: 415 MSQAEMSELSVAQKPEKL 432
S E SE V + EKL
Sbjct: 782 QSSLENSESDVEENQEKL 799
>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
Length = 4753
Score = 35.4 bits (80), Expect = 0.14
Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 38/202 (18%)
Query: 254 DENFRKRKLPVVSSVVKVKKF----NHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPS 309
+E + ++P V S ++ ++ N + E EEE++ YG + +S+S P PS
Sbjct: 2697 EEEEEEERVPEVESEGELAQWEDFSNSNSETEEEEEPYGLQVARVSNS----RDPSLTPS 2752
Query: 310 LPPSKQANKNLILKAISEAQESVTKTTNY--------STVPQKQ---------TLPVA-- 350
+ P + K I I QE T+ +NY T QK+ LPV
Sbjct: 2753 IGPVSRGMKESISHKI--RQEKGTRASNYRLQVRRSFKTWWQKKPQMDLISPLLLPVLLL 2810
Query: 351 -PRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVM 409
P+ + S E++ G P P E + + +E+ T Q L++ P +
Sbjct: 2811 HPQEKPSDLVFSQELILG----PNSETPNLYLERQWEKLEEQLATSAAQ----LKLSPHL 2862
Query: 410 AETLQMSQAEMSELSVAQKPEK 431
A M+Q + V +P +
Sbjct: 2863 ARCHSMAQHVARLVRVLARPRQ 2884
>gi|21536423 amphiphysin isoform 2 [Homo sapiens]
Length = 653
Score = 35.4 bits (80), Expect = 0.14
Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 12/201 (5%)
Query: 194 HLNRLQFQQQQNS--IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMS 251
HL LQ ++++ I A++ ++ V+E + E L SL F+ N + +S
Sbjct: 151 HLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVS 210
Query: 252 MEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLP 311
+ F K + + +V D ++ G+ + S ++ P PS
Sbjct: 211 SLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAFTIQGAPSDSGPLRIAKTPSPPEEPSPL 270
Query: 312 PSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRT 371
PS A+ N L S A + P LP T+ Q+E + + +
Sbjct: 271 PSPTASPNHTLAPASPAPARPRSPSQTRKGPPVPPLPKVTPTKELQQENIISFFE-DNFV 329
Query: 372 PRIS---------PPIKEEET 383
P IS P +K+EET
Sbjct: 330 PEISVTTPSQNEVPEVKKEET 350
>gi|4502081 amphiphysin isoform 1 [Homo sapiens]
Length = 695
Score = 35.4 bits (80), Expect = 0.14
Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 12/201 (5%)
Query: 194 HLNRLQFQQQQNS--IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMS 251
HL LQ ++++ I A++ ++ V+E + E L SL F+ N + +S
Sbjct: 151 HLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVS 210
Query: 252 MEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLP 311
+ F K + + +V D ++ G+ + S ++ P PS
Sbjct: 211 SLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAFTIQGAPSDSGPLRIAKTPSPPEEPSPL 270
Query: 312 PSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRT 371
PS A+ N L S A + P LP T+ Q+E + + +
Sbjct: 271 PSPTASPNHTLAPASPAPARPRSPSQTRKGPPVPPLPKVTPTKELQQENIISFFE-DNFV 329
Query: 372 PRIS---------PPIKEEET 383
P IS P +K+EET
Sbjct: 330 PEISVTTPSQNEVPEVKKEET 350
>gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens]
Length = 1430
Score = 35.4 bits (80), Expect = 0.14
Identities = 65/274 (23%), Positives = 103/274 (37%), Gaps = 35/274 (12%)
Query: 134 SEDVIDIKPEPDDLIDEDLNFVQENP-LSQKKPTVTLTYGSSR------PSIEIYRPPAS 186
S D + K E DL +++ V P KP T T R PS P S
Sbjct: 285 SSDGVSKKSEVKDLGPLEIHLVPYTPKFPTPKPRKTRTARLLRQKCVDTPSESTEEPGNS 344
Query: 187 RNADSGVHLNRLQFQQ----QQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPF 242
++ S + N L+ + QN + +Q+D +L LN + +
Sbjct: 345 DSSSSCLTENSLKINKISVLHQNVLCKQEQVDKM--------KLGNKSELNMESNSDAQD 396
Query: 243 FRNNSEKMSMEDENFRKRKLPV-VSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVP 301
N+ + M E +F K S + DG D G TG I +VS+
Sbjct: 397 LVNSQKAMCNETTSFEKMAPSFDKDSNLSSDSTTVDGSSMSLAVDEG--TGFIRCTVSMS 454
Query: 302 AKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTV----PQKQTLPVAPRTRTSQ 357
+ + + Q+ +NL + A +ESV K N + PQ+ +LP + +
Sbjct: 455 LPKQLKLTCNEHLQSGRNLGVSAPQMQKESVIKEENSLRIVPKKPQRHSLPATGVLKKAA 514
Query: 358 EELLAEVVQGQSRTPRISPPIKEEETKGDSVEKN 391
E L E + S P EE++ S+E+N
Sbjct: 515 SEELLE---------KSSYPSSEEKSSEKSLERN 539
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 35.0 bits (79), Expect = 0.19
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 299 SVPAKPERRPSLP-PSKQANK--------NLILKAISEAQESVTKTTNYSTVPQKQTLPV 349
+VPA ++ P++P PS++A+ + + + K + T+PQK P
Sbjct: 464 AVPAPSQKAPAIPAPSRKASAASASPRKASAVPAPPQKTPPPSQKAPSVPTIPQKAVSPT 523
Query: 350 APRTRT------SQEELLAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRL 403
AP+ ++ SQ+ L + Q +SPP + GD G R +L R
Sbjct: 524 APKKKSLLLPAPSQKALPTSPTEYQM---ALSPPASRGKLPGDFDVLPTGIPGRAVLERS 580
Query: 404 QI--DPVMAETLQMSQAEMSELSV-AQKPE 430
Q P T++ + ++ E++ A+ PE
Sbjct: 581 QSGGKPEPVVTVRTQETDVVEMTTQAKSPE 610
>gi|33667044 ABI gene family, member 3 (NESH) binding protein [Homo
sapiens]
Length = 1075
Score = 35.0 bits (79), Expect = 0.19
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 301 PAKPER--RPSLPPSKQANKNLILKAISEAQESVTKTTNYST-VPQKQTLPVAPRTRTSQ 357
P KP+ RP +P ++ K + + ++ + S + +Y+T P+ LP P SQ
Sbjct: 541 PPKPKTSPRPRIPQTQPVPK-VPQRVTAKPKTSPSPEVSYTTPAPKDVLLPHKPYPEVSQ 599
Query: 358 EELLAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQ 396
E +G P ISP +EE + E +Q TQ+
Sbjct: 600 SEPAPLETRGIPFIPMISPSPSQEELQTTLEETDQSTQE 638
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 35.0 bits (79), Expect = 0.19
Identities = 71/347 (20%), Positives = 123/347 (35%), Gaps = 35/347 (10%)
Query: 41 SVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTS 100
+ +TE SS +++ + + PS S ++P P A PE S +ST+
Sbjct: 1605 TASTEASSSTTAEGSSMTISTPSEGSPLL--------TSIPVSTTPVASPEA--STLSTT 1654
Query: 101 SQESKTTNVRQTYDDGAATRLMSTVKPL------REPAPSEDVIDIKPEPDDLIDEDLNF 154
+S + + T + T T P R P S I ++ P + ++
Sbjct: 1655 PVDSNSPVITSTEVSSSPTPAEGTSMPTSTYTEGRTPLTS---ITVRTTP--VASSAIST 1709
Query: 155 VQENPLSQKKPTVTLTYGSSRPSI-EIYRPPASRNADSGVHLNRLQFQQQQNSIHAAKQL 213
+ P+ P T T S P+ E P S ++ L + + L
Sbjct: 1710 LSTTPVDNSTPVTTSTEARSSPTTSEGTSMPNSTPSEGTTPLTSIP-------VSTTPVL 1762
Query: 214 DMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKK 273
++S + T V S E T SP +E S+ + P+ S+ V
Sbjct: 1763 SSEASTLSATPIDTSTPVTTSTEATSSP---TTAEGTSIPTSTLSEGMTPLTSTPVSHTL 1819
Query: 274 FNHDGEEEEEDDDYGSRTGSISSS-VSVPAKPERRPSLPPSKQANKNLILKAISEAQESV 332
+ S + ++S+ VS P S+ S + + L +I + +V
Sbjct: 1820 VANSEASTLSTTPVDSNSPVVTSTAVSSSPTPAEGTSIATSTPSEGSTALTSIPVSTTTV 1879
Query: 333 --TKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPP 377
++T ST P + PV + S A+ + TPR P
Sbjct: 1880 ASSETNTLSTTPAVTSTPVTTYAQVSSSPTTADGSSMPTSTPREGRP 1926
Score = 33.9 bits (76), Expect = 0.41
Identities = 69/341 (20%), Positives = 111/341 (32%), Gaps = 35/341 (10%)
Query: 44 TEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQE 103
T + SS T D VP S S G ++P P A PE S +ST+ +
Sbjct: 2488 TTSTEASSSPTTAEDIVVPI--STASEGSTLL--TSIPVSTTPVASPEA--STLSTTPVD 2541
Query: 104 SKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKP-EPDDLIDEDLNFVQENPLSQ 162
S + V T +AT T P + + P L + + + P+
Sbjct: 2542 SNSPVVTSTEISSSATSAEGTSMPTSTYSEGSTPLRSMPVSTKPLASSEASTLSTTPVDT 2601
Query: 163 KKPTVTLTYGSSRP------SIEIYRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQ 216
P T T SS P S+ I P + + + ++ + + S + +D +
Sbjct: 2602 SIPVTTSTETSSSPTTAKDTSMPISTPSEVSTSLTSILVSTMPVASSEASTLSTTPVDTR 2661
Query: 217 SSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNH 276
+ TG P +E SM +R P+ + +V +
Sbjct: 2662 TLVTTSTGTSSSP---------------TTAEGSSMPTSTPGERSTPLTNILVSTTLLAN 2706
Query: 277 DGEEEEEDDDYGSRT-----GSISSSVSVPAKPERRPSLPPSKQANKNLILKAISEAQES 331
+ T SSS + R S P IL +S +
Sbjct: 2707 SEASTLSTTPVDTSTPVTTSAEASSSPTTAEGTSMRISTPSDGSTPLTSIL--VSTLPVA 2764
Query: 332 VTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTP 372
++ + ST ++PV T S AEV + TP
Sbjct: 2765 SSEASTVSTTAVDTSIPVTTSTEASSSPTTAEVTSMPTSTP 2805
Score = 32.3 bits (72), Expect = 1.2
Identities = 72/375 (19%), Positives = 124/375 (33%), Gaps = 55/375 (14%)
Query: 39 LRSVTTEPSSLKSSD-----TNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIPSARP--- 90
LRS+ L SS+ T D+++P S + + P++ PS
Sbjct: 2576 LRSMPVSTKPLASSEASTLSTTPVDTSIPVTTSTETSSSPTTAKDTSMPISTPSEVSTSL 2635
Query: 91 -----------EKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAP-SEDVI 138
S +ST+ +++T T + T + P P S +
Sbjct: 2636 TSILVSTMPVASSEASTLSTTPVDTRTLVTTSTGTSSSPTTAEGSSMPTSTPGERSTPLT 2695
Query: 139 DIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRP------SIEIYRPPASRNADSG 192
+I L + + + + P+ P T SS P S+ I P +
Sbjct: 2696 NILVSTTLLANSEASTLSTTPVDTSTPVTTSAEASSSPTTAEGTSMRISTPSDGSTPLTS 2755
Query: 193 VHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSM 252
+ ++ L + S + +D V S E + SP +E SM
Sbjct: 2756 ILVSTLPVASSEASTVSTTAVDTSIP------------VTTSTEASSSP---TTAEVTSM 2800
Query: 253 EDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPS--- 309
+ P+ S V NH E + S+ V+ K P+
Sbjct: 2801 PTSTPSETSTPLTSMPV-----NHTPVASSEAGTLSTTPVDTSTPVTTSTKASSSPTTAE 2855
Query: 310 ---LPPSKQANKNLILKAISEAQESV--TKTTNYSTVPQKQTLPVAPRTRTSQEELLAEV 364
+P S + + +L +I + V ++ + ST P ++PV T S AE
Sbjct: 2856 GIVVPISTASEGSTLLTSIPVSTTPVASSEASTLSTTPVDTSIPVTTSTEGSSSPTTAEG 2915
Query: 365 VQGQSRTP-RISPPI 378
TP +S P+
Sbjct: 2916 TSMPISTPSEVSTPL 2930
Score = 32.0 bits (71), Expect = 1.6
Identities = 60/312 (19%), Positives = 107/312 (34%), Gaps = 25/312 (8%)
Query: 79 AVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVI 138
+VP P A E S +ST+ +S T T + T P P+ +
Sbjct: 3226 SVPVSNTPVASSEA--SILSTTPVDSNTPLTTSTEASSSPPTAEGTSMPTSTPSEGSTPL 3283
Query: 139 DIKPEPDDLI-DEDLNFVQENPLSQKKPTVTLTYGSSRPSI-EIYRPPASRNADSGVHLN 196
P + + + + P P T + SS P I + P S ++ L
Sbjct: 3284 TSMPVSTTTVASSETSTLSTTPADTSTPVTTYSQASSSPPIADGTSMPTSTYSEGSTPLT 3343
Query: 197 RLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSE--KMSMED 254
+ F + ++S + T V S E + SP + S +
Sbjct: 3344 NMSFS-------TTPVVSSEASTLSTTPVDTSTPVTTSTEASLSPTTAEGTSIPTSSPSE 3396
Query: 255 ENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPS- 313
+PV ++ V + N + + + + SSS ++ SLP S
Sbjct: 3397 GTTPLASMPVSTTPVVSSEVNTLSTTPVDSNTLVTTSTEASSSPTIA----EGTSLPTST 3452
Query: 314 -KQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQ------ 366
+ + L + +S + ++ + ST P + PV + T+ AEV
Sbjct: 3453 TSEGSTPLSIMPLSTTPVASSEASTLSTTPVDTSTPVTTSSPTNSSPTTAEVTSMPTSTA 3512
Query: 367 GQSRTPRISPPI 378
G+ TP + P+
Sbjct: 3513 GEGSTPLTNMPV 3524
Score = 30.0 bits (66), Expect = 6.0
Identities = 59/336 (17%), Positives = 115/336 (34%), Gaps = 15/336 (4%)
Query: 35 VLDKLRSVTTEPSSLKSSDTNIFDSNV-PSNKSNFSRGDERRHEAAVPPLAIPSARPEKR 93
V + +++T P + T ++++ P+ S E P ++P +
Sbjct: 3353 VSSEASTLSTTPVDTSTPVTTSTEASLSPTTAEGTSIPTSSPSEGTTPLASMPVSTTPVV 3412
Query: 94 DSRVSTSSQ---ESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKP-EPDDLID 149
S V+T S +S T T + T T P + + I P +
Sbjct: 3413 SSEVNTLSTTPVDSNTLVTTSTEASSSPTIAEGTSLPTSTTSEGSTPLSIMPLSTTPVAS 3472
Query: 150 EDLNFVQENPLSQKKPTVTLTYGSSRPSI-EIYRPPASRNADSGVHLNRLQFQQQQNSIH 208
+ + + P+ P T + +S P+ E+ P S + L + +
Sbjct: 3473 SEASTLSTTPVDTSTPVTTSSPTNSSPTTAEVTSMPTSTAGEGSTPLTNMP-------VS 3525
Query: 209 AAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPF-FRNNSEKMSMEDENFRKRKLPVVSS 267
++S + T V +S + + SP + + +MS E ++SS
Sbjct: 3526 TTPVASSEASTLSTTPVDSNTFVTSSSQASSSPATLQVTTMRMSTPSEGSSSLTTMLLSS 3585
Query: 268 VVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAISE 327
D T + S+S P + P PS + + L + +S
Sbjct: 3586 TYVTSSEASTPSTPSVDRSTPVTTSTQSNSTPTPPEVITLPMSTPS-EVSTPLTIMPVST 3644
Query: 328 AQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAE 363
++++ ST+P + PV T+ S + E
Sbjct: 3645 TSVTISEAGTASTLPVDTSTPVITSTQVSSSPVTPE 3680
>gi|34304336 ring finger protein 8 isoform 2 [Homo sapiens]
Length = 448
Score = 34.7 bits (78), Expect = 0.24
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 327 EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD 386
EA +V K T K+ + + + Q +L AE Q Q+R ++ +EEE
Sbjct: 268 EAVMNVKKQTQKGN--SKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQ 325
Query: 387 SVEKNQGTQ--QRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCK 437
+E QG + ++QL LQ + E L S+ + ++ Q K LE+ K
Sbjct: 326 GLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKDFE--AIIQAKNKELEQTK 376
>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
Length = 485
Score = 34.7 bits (78), Expect = 0.24
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 327 EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD 386
EA +V K T K+ + + + Q +L AE Q Q+R ++ +EEE
Sbjct: 268 EAVMNVKKQTQKGN--SKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQ 325
Query: 387 SVEKNQGTQ--QRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCK 437
+E QG + ++QL LQ + E L S+ + ++ Q K LE+ K
Sbjct: 326 GLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKDFE--AIIQAKNKELEQTK 376
>gi|41152076 steroid-sensitive protein 1 [Homo sapiens]
Length = 950
Score = 34.7 bits (78), Expect = 0.24
Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 4/130 (3%)
Query: 258 RKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQAN 317
R K+ V K K +G+ E +D G G S + RR +PP++++
Sbjct: 268 RIEKIRQKGFVQKCKASGVEGQVVAEGNDGGGGAGRPSLGSEKKKEDPRRAQVPPTRESR 327
Query: 318 KNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPP 377
++ K + A + P+ TLP AP T ++ A V + T P
Sbjct: 328 VKVLRKLAATAPA----LPQPPSTPRATTLPPAPATTVTRSTSRAVTVAARPMTTTAFPT 383
Query: 378 IKEEETKGDS 387
+ T S
Sbjct: 384 TQRPWTPSPS 393
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,616,190
Number of Sequences: 37866
Number of extensions: 1227434
Number of successful extensions: 6071
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 5805
Number of HSP's gapped (non-prelim): 390
length of query: 571
length of database: 18,247,518
effective HSP length: 108
effective length of query: 463
effective length of database: 14,157,990
effective search space: 6555149370
effective search space used: 6555149370
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.