Guide to the Human Genome
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Name: RNF8 Sequence: fasta or formatted (485aa) NCBI GI: 4504867
Description:

ring finger protein 8 isoform 1

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [448aa] ring finger protein 8 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         25           1
 C cysteine            3.1         15           1
 D aspartate           3.1         15           1
 E glutamate          11.1         54           3
 F phenylalanine       2.3         11           2
 G glycine             5.4         26           2
 H histidine           1.9          9           2
 I isoleucine          4.9         24           2
 K lysine              9.5         46           2
 L leucine             9.3         45           3
 M methionine          3.1         15           1
 N asparagine          5.2         25           2
 P proline             3.5         17           1
 Q glutamine           7.8         38           3
 R arginine            4.7         23           2
 S serine              6.8         33           2
 T threonine           3.7         18           2
 V valine              6.0         29           2
 W tryptophan          1.4          7           1
 Y tyrosine            2.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 8 isoform 1 
RNF8                  0.844   ring finger protein 8 isoform 2 
ZNF853                0.037   zinc finger protein 853 
LOC642446             0.037   PREDICTED: tripartite motif-containing protein 64B-...
TRIM64                0.036   tripartite motif-containing 64 
LOC646754             0.034   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.034   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.034   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.034   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.034   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.034   PREDICTED: tripartite motif-containing protein 64C-...
BAT2D1                0.033   HBxAg transactivated protein 2 
GOLGA4                0.031   golgi autoantigen, golgin subfamily a, 4 
LOC100133758          0.031   PREDICTED: hypothetical protein, partial 
PLEC1                 0.031   plectin 1 isoform 11 
PLEC1                 0.031   plectin 1 isoform 10 
PLEC1                 0.031   plectin 1 isoform 8 
PLEC1                 0.031   plectin 1 isoform 7 
PLEC1                 0.031   plectin 1 isoform 6 
PLEC1                 0.031   plectin 1 isoform 3 
PLEC1                 0.031   plectin 1 isoform 2 
PLEC1                 0.031   plectin 1 isoform 1 
CHFR                  0.031   checkpoint with forkhead and ring finger domains is...
CHFR                  0.031   checkpoint with forkhead and ring finger domains is...
RNF20                 0.031   ring finger protein 20 
CHFR                  0.030   checkpoint with forkhead and ring finger domains is...
CHFR                  0.030   checkpoint with forkhead and ring finger domains is...
CHFR                  0.030   checkpoint with forkhead and ring finger domains is...
TRIM39                0.030   tripartite motif-containing 39 isoform 2 
TRIM39                0.030   tripartite motif-containing 39 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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