Guide to the Human Genome
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Name: SHPRH Sequence: fasta or formatted (1687aa) NCBI GI: 111548666
Description:

SNF2 histone linker PHD RING helicase isoform a

Referenced in:

PHD Finger Proteins

Other entries for this name:
alt prot [1659aa] SNF2 histone linker PHD RING helicase isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         85           2
 C cysteine            2.7         45           2
 D aspartate           4.7         80           5
 E glutamate           8.7        146           3
 F phenylalanine       3.1         52           1
 G glycine             4.1         69           2
 H histidine           3.5         59           1
 I isoleucine          6.4        108           3
 K lysine              7.5        127           2
 L leucine             9.8        166           3
 M methionine          2.0         34           1
 N asparagine          3.6         60           2
 P proline             4.9         82           2
 Q glutamine           5.2         87           2
 R arginine            5.7         96           2
 S serine              7.8        132           3
 T threonine           5.0         85           3
 V valine              6.2        104           3
 W tryptophan          1.3         22           2
 Y tyrosine            2.8         48           5
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SNF2 histone linker PHD RING helicase isoform a [Ho... 
SHPRH                 0.983   SNF2 histone linker PHD RING helicase isoform b [Hom...
TTF2                  0.026   transcription termination factor, RNA polymerase II ...
HLTF                  0.025   helicase-like transcription factor 
HLTF                  0.025   helicase-like transcription factor 
ERCC6L                0.016   excision repair protein ERCC6-like 
HELLS                 0.014   helicase, lymphoid-specific 
BTAF1                 0.014   BTAF1 RNA polymerase II, B-TFIID transcription facto...
CHD5                  0.013   chromodomain helicase DNA binding protein 5 
ZRANB3                0.013   zinc finger, RAN-binding domain containing 3 
C9orf102              0.012   RAD26L hypothetical protein 
SMARCA5               0.012   SWI/SNF-related matrix-associated actin-dependent re...
CHD4                  0.012   chromodomain helicase DNA binding protein 4 
SMARCA1               0.012   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA1               0.012   SWI/SNF-related matrix-associated actin-dependent re...
INO80                 0.012   INO80 complex homolog 1 
ERCC6                 0.012   excision repair cross-complementing rodent repair def...
CHD3                  0.011   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.011   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.011   chromodomain helicase DNA binding protein 3 isoform...
CHD2                  0.011   chromodomain helicase DNA binding protein 2 isoform...
ATRX                  0.011   transcriptional regulator ATRX isoform 2 
ATRX                  0.011   transcriptional regulator ATRX isoform 1 
SRCAP                 0.011   Snf2-related CBP activator protein 
SMARCAD1              0.011   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.011   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.011   SWI/SNF-related, matrix-associated actin-dependent ...
HIST1H1D              0.010   histone cluster 1, H1d 
CHD1L                 0.010   chromodomain helicase DNA binding protein 1-like [H...
RAD54B                0.010   RAD54 homolog B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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