Guide to the Human Genome
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Name: LOC100292035 Sequence: fasta or formatted (351aa) NCBI GI: 239753329
Description:

PREDICTED: hypothetical protein XP_002345623

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         47           4
 C cysteine            1.1          4           1
 D aspartate           2.8         10           1
 E glutamate           4.3         15           1
 F phenylalanine       0.0          0           0
 G glycine            16.0         56           4
 H histidine           1.4          5           1
 I isoleucine          0.9          3           1
 K lysine             11.4         40           2
 L leucine             7.7         27           4
 M methionine          1.1          4           1
 N asparagine          1.4          5           1
 P proline             6.3         22           1
 Q glutamine           6.6         23           1
 R arginine           13.4         47           4
 S serine              5.7         20           1
 T threonine           2.6          9           1
 V valine              2.8         10           1
 W tryptophan          0.6          2           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345623 
LOC100287688          0.460   PREDICTED: hypothetical protein XP_002342270 
LOC100293129          0.414   PREDICTED: hypothetical protein 
LOC100292383          0.398   PREDICTED: hypothetical protein 
LOC100291835          0.367   PREDICTED: hypothetical protein XP_002346266 
LOC100292262          0.343   PREDICTED: hypothetical protein 
LOC100292062          0.339   PREDICTED: hypothetical protein XP_002346314 
LOC100290780          0.325   PREDICTED: hypothetical protein XP_002348295 
LOC100290552          0.297   PREDICTED: hypothetical protein XP_002347697 
LOC100292370          0.151   PREDICTED: hypothetical protein 
SFRS4                 0.047   splicing factor, arginine/serine-rich 4 
SRRM2                 0.047   splicing coactivator subunit SRm300 
FLJ37078              0.046   hypothetical protein LOC222183 
LOC100133599          0.044   PREDICTED: hypothetical protein 
SCAF1                 0.043   SR-related CTD-associated factor 1 
LOC728650             0.040   PREDICTED: hypothetical protein 
LOC100133599          0.040   PREDICTED: hypothetical protein 
LOC100288496          0.040   PREDICTED: hypothetical protein XP_002342747 
AGAP2                 0.038   centaurin, gamma 1 isoform PIKE-L 
H1FOO                 0.038   H1 histone family, member O, oocyte-specific 
LOC100127891          0.037   PREDICTED: hypothetical protein 
LOC728650             0.037   PREDICTED: hypothetical protein 
ZRANB2                0.037   zinc finger protein 265 isoform 1 
LOC100292853          0.036   PREDICTED: hypothetical protein 
LOC100288412          0.036   PREDICTED: hypothetical protein XP_002342328 
HIST1H1B              0.036   histone cluster 1, H1b 
CDC2L5                0.036   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.036   cell division cycle 2-like 5 isoform 2 
LOC100293596          0.034   PREDICTED: similar to mucin 
LOC100129463          0.034   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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