Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 4885127

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4885127 caudal type homeobox 4 [Homo sapiens]
         (284 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4885127 caudal type homeobox 4 [Homo sapiens]                      589   e-168
gi|121114296 caudal type homeobox 1 [Homo sapiens]                    177   1e-44
gi|169636435 caudal type homeobox 2 [Homo sapiens]                    158   4e-39
gi|24497517 homeobox A5 [Homo sapiens]                                 97   1e-20
gi|23397672 homeobox D4 [Homo sapiens]                                 86   4e-17
gi|194363768 homeobox D9 [Homo sapiens]                                85   6e-17
gi|4504469 homeobox B5 [Homo sapiens]                                  84   1e-16
gi|148613882 homeobox A4 [Homo sapiens]                                83   2e-16
gi|10140847 homeobox A2 [Homo sapiens]                                 82   4e-16
gi|85068580 homeobox B7 [Homo sapiens]                                 82   4e-16
gi|24497538 homeobox C4 [Homo sapiens]                                 82   5e-16
gi|24497540 homeobox C4 [Homo sapiens]                                 82   5e-16
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]              80   3e-15
gi|11321638 homeobox C5 [Homo sapiens]                                 79   3e-15
gi|24497533 homeobox C10 [Homo sapiens]                                79   5e-15
gi|24497556 homeobox A7 [Homo sapiens]                                 79   6e-15
gi|23097236 homeobox A9 [Homo sapiens]                                 78   8e-15
gi|13273315 homeobox B4 [Homo sapiens]                                 78   8e-15
gi|24497544 homeobox C6 isoform 2 [Homo sapiens]                       77   2e-14
gi|4758554 homeobox C6 isoform 1 [Homo sapiens]                        77   2e-14
gi|23510368 homeobox D11 [Homo sapiens]                                76   3e-14
gi|24497513 homeobox A3 isoform a [Homo sapiens]                       76   3e-14
gi|13562112 homeobox A3 isoform a [Homo sapiens]                       76   3e-14
gi|13489077 homeobox A6 [Homo sapiens]                                 75   7e-14
gi|182765442 homeobox A10 isoform a [Homo sapiens]                     75   7e-14
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]           74   1e-13
gi|5031759 homeobox A11 [Homo sapiens]                                 74   1e-13
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]              74   1e-13
gi|15029508 homeobox B9 [Homo sapiens]                                 74   2e-13
gi|84570137 homeobox B3 [Homo sapiens]                                 74   2e-13

>gi|4885127 caudal type homeobox 4 [Homo sapiens]
          Length = 284

 Score =  589 bits (1518), Expect = e-168
 Identities = 284/284 (100%), Positives = 284/284 (100%)

Query: 1   MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP 60
           MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP
Sbjct: 1   MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP 60

Query: 61  SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG 120
           SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG
Sbjct: 61  SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG 120

Query: 121 GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVY 180
           GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVY
Sbjct: 121 GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVY 180

Query: 181 TDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE 240
           TDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE
Sbjct: 181 TDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE 240

Query: 241 NSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE 284
           NSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE
Sbjct: 241 NSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE 284


>gi|121114296 caudal type homeobox 1 [Homo sapiens]
          Length = 265

 Score =  177 bits (448), Expect = 1e-44
 Identities = 106/243 (43%), Positives = 134/243 (55%), Gaps = 29/243 (11%)

Query: 1   MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP 60
           MY   +L+K++ +YPG    P    + G G    G    P     A P +  +  Y H+ 
Sbjct: 1   MYVGYVLDKDSPVYPG----PARPASLGLGPQAYGPPAPPP----APPQYPDFSSYSHV- 51

Query: 61  SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG 120
             +P       WG+P+  P++DW+   GP             +SPA+       +  PV 
Sbjct: 52  --EPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPA-------ASPASLAFGPPPDFSPV- 101

Query: 121 GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQV-----TGKTRTKEK 175
                 + PG   G L     G    SSP   R +PY WMR++V       +GKTRTK+K
Sbjct: 102 -----PAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKDK 156

Query: 176 YRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKK 235
           YRVVYTDHQRLELEKEFH +RYITI+RKSELA NLGL+ERQVKIWFQNRRAKERK+ KKK
Sbjct: 157 YRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKK 216

Query: 236 ISQ 238
             Q
Sbjct: 217 QQQ 219


>gi|169636435 caudal type homeobox 2 [Homo sapiens]
          Length = 313

 Score =  158 bits (400), Expect = 4e-39
 Identities = 113/275 (41%), Positives = 139/275 (50%), Gaps = 61/275 (22%)

Query: 1   MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGY---- 56
           MY S LL+K+  MYP ++   GG   A               NF + P +  Y GY    
Sbjct: 1   MYVSYLLDKDVSMYPSSVRHSGGLNLA-------------PQNFVSPPQYPDYGGYHVAA 47

Query: 57  --------PHMPSMDPHWPSLGVWGSPYSPPREDWSVY-PGPSSTMGTVPVNDVTS-SPA 106
                       S  P WP+   +G+P    REDW+ Y PG ++       + +   SPA
Sbjct: 48  AAAAAANLDSAQSPGPSWPA--AYGAPL---REDWNGYAPGGAAAAANAVAHGLNGGSPA 102

Query: 107 AFCSTDYSNLG--------------PVGGGTSGSSL-----PGQAGGSLVPTDAGAAKAS 147
           A  +  YS+                P    +  S L     PG  G    P    AA+  
Sbjct: 103 A--AMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPG----PAATAAAEQL 156

Query: 148 SPSRSRHSPYAWMRKTVQVT----GKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRK 203
           SP   R +   WMRK  Q +     KTRTK+KYRVVYTDHQRLELEKEFH +RYITI+RK
Sbjct: 157 SPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRK 216

Query: 204 SELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQ 238
           +ELA  LGLSERQVKIWFQNRRAKERK+ KKK+ Q
Sbjct: 217 AELAATLGLSERQVKIWFQNRRAKERKINKKKLQQ 251


>gi|24497517 homeobox A5 [Homo sapiens]
          Length = 270

 Score = 97.4 bits (241), Expect = 1e-20
 Identities = 85/238 (35%), Positives = 108/238 (45%), Gaps = 35/238 (14%)

Query: 22  GGDGTAGTGGTGGGGSPMPASNFAA----APAFSHYMGYPHMPSMDPHWPSLGVWGSPYS 77
           G D + G  G+G  GS   A ++AA    APA   Y      P+   H        SP  
Sbjct: 51  GMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYS----QPATSTH--------SPQP 98

Query: 78  PPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLV 137
            P    +V P P S       N +++S  A  S D        G T  SS  G    S  
Sbjct: 99  DPLPCSAVAPSPGSDSHHGGKNSLSNSSGA--SAD-------AGSTHISSREGVGTASGA 149

Query: 138 PTDAGAAKASSPSRSRHSP--------YAWMRKTVQVTGKTRTKE--KYRVVYTDHQRLE 187
             DA A+   + ++S  SP        Y WMRK           E  + R  YT +Q LE
Sbjct: 150 EEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLE 209

Query: 188 LEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGGS 245
           LEKEFH NRY+T +R+ E+A  L LSERQ+KIWFQNRR K +K  K K      +GG+
Sbjct: 210 LEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGA 267


>gi|23397672 homeobox D4 [Homo sapiens]
          Length = 255

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 71/208 (34%), Positives = 96/208 (46%), Gaps = 28/208 (13%)

Query: 70  GVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGS-SL 128
           G  G+ + PP     +YP P    G  P     S P    +      G   GG  G  + 
Sbjct: 40  GAQGADFQPP----GLYPRPD--FGEQPFGG--SGPGPGSALPARGHGQEPGGPGGHYAA 91

Query: 129 PGQ---AGGSLVPTDAGAAKASSPSRSRHSP-----------YAWMRK----TVQVTGKT 170
           PG+   A  +  P     A+A S S  +  P           Y WM+K    +V      
Sbjct: 92  PGEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTG 151

Query: 171 RTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERK 230
              ++ R  YT  Q LELEKEFH NRY+T +R+ E+A  L LSERQ+KIWFQNRR K +K
Sbjct: 152 GEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 211

Query: 231 MIKKKISQFENSGGSVQSD-SDSISPGE 257
             K   ++  +S  S  S  S S++P +
Sbjct: 212 DHKLPNTKGRSSSSSSSSSCSSSVAPSQ 239


>gi|194363768 homeobox D9 [Homo sapiens]
          Length = 352

 Score = 85.1 bits (209), Expect = 6e-17
 Identities = 81/244 (33%), Positives = 101/244 (41%), Gaps = 25/244 (10%)

Query: 10  EAGMYPGTLMSP--GGDGTAGTGGTGGGGSPM--PASNFAAAPAFSHYMGYPHM-----P 60
           E G Y  + M P  G  G AG GG GGGG P   P+   +      HY   P       P
Sbjct: 111 EPGRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAP 170

Query: 61  SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGT-VPVNDVTSSPAAFCSTDYSNLGPV 119
           +      S        S  R + SV      + G     N      AA  +      GP 
Sbjct: 171 ATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAAT---GGTGPG 227

Query: 120 GG-----GTSGSSLPGQAGGSLVP---TDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTR 171
            G     GT GSS P       +P         + S P + +  P       +      R
Sbjct: 228 AGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHA----R 283

Query: 172 TKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKM 231
           +  K R  YT +Q LELEKEF  N Y+T  R+ E+A  L L+ERQVKIWFQNRR K +KM
Sbjct: 284 STRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM 343

Query: 232 IKKK 235
            K+K
Sbjct: 344 SKEK 347


>gi|4504469 homeobox B5 [Homo sapiens]
          Length = 269

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 30/247 (12%)

Query: 28  GTGGTGGGGSPMPASNFAAAPAFSHY---MGYPHMPSMDPHWPSLG----VWGSPYSPPR 80
           G+G +  G    PA+    +  +++    +      +   H+ ++G     + +P   PR
Sbjct: 25  GSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSSASSSHFGAVGESSRAFPAPAQEPR 84

Query: 81  EDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTD 140
              +      S+  ++P  +  S  A   ++  S+       ++  +   +A  S  P +
Sbjct: 85  FRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQATSASSSANFTEIDEASASSEPEE 144

Query: 141 AGAAKASSPSRSRHSP-----------------YAWMRK---TVQVTGKTRTKEKYRVVY 180
           A A++ SSPS +R  P                 + WMRK   +  +TG     ++ R  Y
Sbjct: 145 A-ASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMRKLHISHDMTGPDG--KRARTAY 201

Query: 181 TDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE 240
           T +Q LELEKEFH NRY+T +R+ E+A  L LSERQ+KIWFQNRR K +K  K K     
Sbjct: 202 TRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLA 261

Query: 241 NSGGSVQ 247
            +G + Q
Sbjct: 262 TAGSAFQ 268


>gi|148613882 homeobox A4 [Homo sapiens]
          Length = 320

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 51/126 (40%), Positives = 68/126 (53%), Gaps = 13/126 (10%)

Query: 157 YAWMRK----TVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGL 212
           Y WM+K     V  +      ++ R  YT  Q LELEKEFH NRY+T +R+ E+A  L L
Sbjct: 195 YPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCL 254

Query: 213 SERQVKIWFQNRRAKERKMIKKKISQFENSG---------GSVQSDSDSISPGELPNTFF 263
           SERQVKIWFQNRR K +K  K   ++  +S          G  Q+ S  + P   P+T  
Sbjct: 255 SERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTST 314

Query: 264 TTPSAV 269
             PS++
Sbjct: 315 PVPSSI 320


>gi|10140847 homeobox A2 [Homo sapiens]
          Length = 376

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 70/217 (32%), Positives = 97/217 (44%), Gaps = 44/217 (20%)

Query: 90  SSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTDAGAAKASSP 149
           SS++ T  ++  T  P  F  T   +L P      GS     AGG   P+ AG+  +  P
Sbjct: 34  SSSIKTSTLSHSTLIPPPFEQT-IPSLNP------GSHPRHGAGGRPKPSPAGSRGSPVP 86

Query: 150 SRSRHSP-YAWMRK-----------------TVQVTGKTRTKEK---------------Y 176
           + +   P Y WM++                 T   TG      K                
Sbjct: 87  AGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRL 146

Query: 177 RVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKI 236
           R  YT+ Q LELEKEFH N+Y+   R+ E+A  L L+ERQVK+WFQNRR K ++  + K 
Sbjct: 147 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKE 206

Query: 237 SQFENSGGSVQS--DSDSISPGELPNTFFTTPSAVRG 271
           +Q  NS G  +S  DS+ +   E   T F    +V G
Sbjct: 207 NQ--NSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSG 241


>gi|85068580 homeobox B7 [Homo sapiens]
          Length = 217

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 66/191 (34%), Positives = 87/191 (45%), Gaps = 50/191 (26%)

Query: 83  WSVYPGPSSTMGTVPVNDVTS---------------SPAAFCSTDYSNLGPVGGGTSGSS 127
           +S YP  SS   T    + TS               S A+F ++    L P GGG +G S
Sbjct: 11  FSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAAS-MQGLYPGGGGMAGQS 69

Query: 128 LPG--QAGGSLVPTD-----------------AGAAKASSPSRSRHSP---------YAW 159
             G   AG  L P+                    +AKA+     R S          Y W
Sbjct: 70  AAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPW 129

Query: 160 MRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKI 219
           MR +         +++ R  YT +Q LELEKEFH NRY+T +R+ E+A  L L+ERQ+KI
Sbjct: 130 MRSS------GTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKI 183

Query: 220 WFQNRRAKERK 230
           WFQNRR K +K
Sbjct: 184 WFQNRRMKWKK 194


>gi|24497538 homeobox C4 [Homo sapiens]
          Length = 264

 Score = 82.0 bits (201), Expect = 5e-16
 Identities = 62/195 (31%), Positives = 89/195 (45%), Gaps = 20/195 (10%)

Query: 75  PYSPPREDW-------SVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSS 127
           P  PPR  +       +   GP ++ G  P       P    S       P+ G ++  S
Sbjct: 54  PPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEK--SQSLCEPAPLSGASASPS 111

Query: 128 LPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRK----TVQVTGKTRTKEKYRVVYTDH 183
               A     P    +A +  P       Y WM+K    TV         ++ R  YT  
Sbjct: 112 PAPPACSQPAPDHPSSAASKQPI-----VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQ 166

Query: 184 QRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENS- 242
           Q LELEKEFH NRY+T +R+ E+A +L LSERQ+KIWFQNRR K +K  +   ++  ++ 
Sbjct: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAP 226

Query: 243 -GGSVQSDSDSISPG 256
             G+  S   + +PG
Sbjct: 227 PAGAAPSTLSAATPG 241


>gi|24497540 homeobox C4 [Homo sapiens]
          Length = 264

 Score = 82.0 bits (201), Expect = 5e-16
 Identities = 62/195 (31%), Positives = 89/195 (45%), Gaps = 20/195 (10%)

Query: 75  PYSPPREDW-------SVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSS 127
           P  PPR  +       +   GP ++ G  P       P    S       P+ G ++  S
Sbjct: 54  PPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEK--SQSLCEPAPLSGASASPS 111

Query: 128 LPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRK----TVQVTGKTRTKEKYRVVYTDH 183
               A     P    +A +  P       Y WM+K    TV         ++ R  YT  
Sbjct: 112 PAPPACSQPAPDHPSSAASKQPI-----VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQ 166

Query: 184 QRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENS- 242
           Q LELEKEFH NRY+T +R+ E+A +L LSERQ+KIWFQNRR K +K  +   ++  ++ 
Sbjct: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAP 226

Query: 243 -GGSVQSDSDSISPG 256
             G+  S   + +PG
Sbjct: 227 PAGAAPSTLSAATPG 241


>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
          Length = 254

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 78/237 (32%), Positives = 104/237 (43%), Gaps = 35/237 (14%)

Query: 33  GGGGSPMPASNFAAAPAFSHYMGYPHMPSMDPHWPSLG---VWGSPYSPPREDW---SVY 86
           G G S +P  ++   P FS +     + +    +P      +  +P+S P+E+      +
Sbjct: 29  GNGASGLP--HYPPTP-FSFHQKPDFLATATAAYPDFSASCLAATPHSLPQEEHIFTEQH 85

Query: 87  PG-PSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGG----GTSGSSL------PGQAGGS 135
           P  P S     PV+D    P         N GP GG    GTS   L      PG   G 
Sbjct: 86  PAFPQSPNWHFPVSDARRRP---------NSGPAGGSKEMGTSSLGLVDTTGGPGDDYGV 136

Query: 136 LVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCN 195
           L  T     K SS  R   S     R   + + K R   K R  +T  Q  ELE EF  +
Sbjct: 137 LGSTANETEKKSSRRRKESSDNQENRGKPEGSSKAR---KERTAFTKEQLRELEAEFAHH 193

Query: 196 RYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSDS 252
            Y+T  R+ E+AVNL LSERQVK+WFQNRR K +++   K  Q  +  G    D DS
Sbjct: 194 NYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRV---KGGQPISPNGQDPEDGDS 247


>gi|11321638 homeobox C5 [Homo sapiens]
          Length = 222

 Score = 79.3 bits (194), Expect = 3e-15
 Identities = 43/79 (54%), Positives = 55/79 (69%), Gaps = 2/79 (2%)

Query: 157 YAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQ 216
           Y WM K + ++ +T  K   R  YT +Q LELEKEFH NRY+T +R+ E+A NL L+ERQ
Sbjct: 141 YPWMTK-LHMSHETDGKRS-RTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQ 198

Query: 217 VKIWFQNRRAKERKMIKKK 235
           +KIWFQNRR K +K  K K
Sbjct: 199 IKIWFQNRRMKWKKDSKMK 217


>gi|24497533 homeobox C10 [Homo sapiens]
          Length = 342

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 61/205 (29%), Positives = 91/205 (44%), Gaps = 21/205 (10%)

Query: 38  PMPASNFAA--APAFSHYMGYPHMPSMD--PHWPSLGVWGSPYSP-----PREDWSVYP- 87
           P+P S       P  S+Y   P   ++D  PH      + +P+       PR +    P 
Sbjct: 132 PLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAPFEQRASLNPRAEHLESPQ 191

Query: 88  -GPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTDAGAAKA 146
            G   +    P +D  +       T+ S  GP G  +       +A  S   T    AK 
Sbjct: 192 LGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSPDTSDNEAKE 251

Query: 147 SSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSEL 206
               ++ ++   W+          ++  K R  YT HQ LELEKEF  N Y+T +R+ E+
Sbjct: 252 EI--KAENTTGNWLT--------AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEI 301

Query: 207 AVNLGLSERQVKIWFQNRRAKERKM 231
           +  + L++RQVKIWFQNRR K +KM
Sbjct: 302 SKTINLTDRQVKIWFQNRRMKLKKM 326


>gi|24497556 homeobox A7 [Homo sapiens]
          Length = 230

 Score = 78.6 bits (192), Expect = 6e-15
 Identities = 47/99 (47%), Positives = 62/99 (62%), Gaps = 8/99 (8%)

Query: 132 AGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKE 191
           A G+   TD GA   ++ +  R   Y WMR +    G  R  ++ R  YT +Q LELEKE
Sbjct: 97  AKGACDKTDEGALHGAAEANFRI--YPWMRSS----GPDR--KRGRQTYTRYQTLELEKE 148

Query: 192 FHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERK 230
           FH NRY+T +R+ E+A  L L+ERQ+KIWFQNRR K +K
Sbjct: 149 FHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 187


>gi|23097236 homeobox A9 [Homo sapiens]
          Length = 272

 Score = 78.2 bits (191), Expect = 8e-15
 Identities = 68/228 (29%), Positives = 96/228 (42%), Gaps = 48/228 (21%)

Query: 33  GGGGSPMPASNFAAAPA--FSHYMGYPHMPSMDP------------HW--PSLGVWGSPY 76
           G   +P+ A+   A PA  + H+  +P++    P             W  P+ G      
Sbjct: 64  GASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAG 123

Query: 77  SPPREDWSVYPGP-SSTMGTVPVNDVTSSPAAFCSTDYS--------NLGPVGGGTSGSS 127
            P    + + P P S+  G  P  D  +       TDY+           P  G  S ++
Sbjct: 124 LPSSRPYGIKPEPLSARRGDCPTLDTHT----LSLTDYACGSPPVDREKQPSEGAFSENN 179

Query: 128 LPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLE 187
              ++GG   P D     A+           W+          R+  K R  YT HQ LE
Sbjct: 180 AENESGGDKPPIDPNNPAAN-----------WLH--------ARSTRKKRCPYTKHQTLE 220

Query: 188 LEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKK 235
           LEKEF  N Y+T  R+ E+A  L L+ERQVKIWFQNRR K +K+ K +
Sbjct: 221 LEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268


>gi|13273315 homeobox B4 [Homo sapiens]
          Length = 251

 Score = 78.2 bits (191), Expect = 8e-15
 Identities = 44/93 (47%), Positives = 56/93 (60%), Gaps = 4/93 (4%)

Query: 157 YAWMRK----TVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGL 212
           Y WMRK    TV         ++ R  YT  Q LELEKEFH NRY+T +R+ E+A  L L
Sbjct: 142 YPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCL 201

Query: 213 SERQVKIWFQNRRAKERKMIKKKISQFENSGGS 245
           SERQ+KIWFQNRR K +K  K   ++  + G +
Sbjct: 202 SERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAA 234


>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
          Length = 153

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 3/96 (3%)

Query: 157 YAWMRK--TVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSE 214
           Y WM++  +    G    + + R +Y+ +Q LELEKEFH NRY+T +R+ E+A  L L+E
Sbjct: 41  YPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTE 100

Query: 215 RQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDS 250
           RQ+KIWFQNRR K +K      S     GG   +DS
Sbjct: 101 RQIKIWFQNRRMKWKKE-SNLTSTLSGGGGGATADS 135


>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
          Length = 235

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 3/96 (3%)

Query: 157 YAWMRK--TVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSE 214
           Y WM++  +    G    + + R +Y+ +Q LELEKEFH NRY+T +R+ E+A  L L+E
Sbjct: 123 YPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTE 182

Query: 215 RQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDS 250
           RQ+KIWFQNRR K +K      S     GG   +DS
Sbjct: 183 RQIKIWFQNRRMKWKKE-SNLTSTLSGGGGGATADS 217


>gi|23510368 homeobox D11 [Homo sapiens]
          Length = 338

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 78/271 (28%), Positives = 101/271 (37%), Gaps = 72/271 (26%)

Query: 20  SPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMPSMDPHW------------- 66
           S GG  + G  G GGGG+   A  +AAA A +         +M                 
Sbjct: 83  SAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFK 142

Query: 67  ---PSLGVWGSPYSPPREDWSVY--------------------PGPSSTMGTVPVNDVTS 103
              P     G P+ P     + Y                    PGP       P      
Sbjct: 143 APEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAPP 202

Query: 104 SPAAFCSTDYSNLGPVGGG-------TSGSSLPGQAGGSL-----VPTDAGAAKASS--- 148
            P           G  GGG       T GS   G A GS       P +AGA K+SS   
Sbjct: 203 QPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVA 262

Query: 149 PSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAV 208
           P RSR                     K R  YT +Q  ELE+EF  N YI  +++ +L+ 
Sbjct: 263 PQRSR---------------------KKRCPYTKYQIRELEREFFFNVYINKEKRLQLSR 301

Query: 209 NLGLSERQVKIWFQNRRAKERKMIKKKISQF 239
            L L++RQVKIWFQNRR KE+K+ + ++  F
Sbjct: 302 MLNLTDRQVKIWFQNRRMKEKKLNRDRLQYF 332


>gi|24497513 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 27/155 (17%)

Query: 124 SGSSLPGQAGGSLVPTDAGAAKA---SSPSRSRHSPYAWMRKTVQVTGKTRTK------- 173
           S +S P  A  +  PT A AAK+   +SP+ ++   + WM+++ Q T +  +        
Sbjct: 123 SSASPPQNASNN--PTPANAAKSPLLNSPTVAKQI-FPWMKESRQNTKQKTSSSSSGESC 179

Query: 174 ------------EKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWF 221
                       ++ R  YT  Q +ELEKEFH NRY+   R+ E+A  L L+ERQ+KIWF
Sbjct: 180 AGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF 239

Query: 222 QNRRAKERKMIKKKISQFENSGGSVQSDSDSISPG 256
           QNRR K +K  K K     +SGG   S S  + PG
Sbjct: 240 QNRRMKYKKDQKGK-GMLTSSGGQSPSRS-PVPPG 272



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 38  PMPASNFAAAPAFSHYMGYPHMPSMDPHWPSL---GVWGSPY--SPPREDWSVYPGPSST 92
           P P   + AA A     G    P  DPH   L   G +G+P+    P      Y  P S 
Sbjct: 323 PPPQKRYTAAGA-----GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSN 377

Query: 93  MGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQ 131
            G           AA  + DY   GP+G G      PG+
Sbjct: 378 SGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGE 416


>gi|13562112 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 27/155 (17%)

Query: 124 SGSSLPGQAGGSLVPTDAGAAKA---SSPSRSRHSPYAWMRKTVQVTGKTRTK------- 173
           S +S P  A  +  PT A AAK+   +SP+ ++   + WM+++ Q T +  +        
Sbjct: 123 SSASPPQNASNN--PTPANAAKSPLLNSPTVAKQI-FPWMKESRQNTKQKTSSSSSGESC 179

Query: 174 ------------EKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWF 221
                       ++ R  YT  Q +ELEKEFH NRY+   R+ E+A  L L+ERQ+KIWF
Sbjct: 180 AGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF 239

Query: 222 QNRRAKERKMIKKKISQFENSGGSVQSDSDSISPG 256
           QNRR K +K  K K     +SGG   S S  + PG
Sbjct: 240 QNRRMKYKKDQKGK-GMLTSSGGQSPSRS-PVPPG 272



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 38  PMPASNFAAAPAFSHYMGYPHMPSMDPHWPSL---GVWGSPY--SPPREDWSVYPGPSST 92
           P P   + AA A     G    P  DPH   L   G +G+P+    P      Y  P S 
Sbjct: 323 PPPQKRYTAAGA-----GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSN 377

Query: 93  MGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQ 131
            G           AA  + DY   GP+G G      PG+
Sbjct: 378 SGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGE 416


>gi|13489077 homeobox A6 [Homo sapiens]
          Length = 233

 Score = 75.1 bits (183), Expect = 7e-14
 Identities = 56/146 (38%), Positives = 72/146 (49%), Gaps = 11/146 (7%)

Query: 108 FCSTDYSNLGPVGGGTS---GSSLPGQAGGSLVP-TDAGAAKA---SSPSRSRHSP-YAW 159
           +   D S   P G G     G  L         P + +G  KA       R   SP Y W
Sbjct: 80  YSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPW 139

Query: 160 MRKTVQVTGKTRTKE--KYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQV 217
           M++     G        + R  YT +Q LELEKEFH NRY+T +R+ E+A  L L+ERQ+
Sbjct: 140 MQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQI 199

Query: 218 KIWFQNRRAKERKMIKKKISQFENSG 243
           KIWFQNRR K +K   K I+  + SG
Sbjct: 200 KIWFQNRRMKWKKE-NKLINSTQPSG 224


>gi|182765442 homeobox A10 isoform a [Homo sapiens]
          Length = 410

 Score = 75.1 bits (183), Expect = 7e-14
 Identities = 69/235 (29%), Positives = 95/235 (40%), Gaps = 48/235 (20%)

Query: 5   CLLEKEAGM-YPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMPSMD 63
           C L   +G+  PG        GTA   G+GGGG+                          
Sbjct: 200 CALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQ------------------------ 235

Query: 64  PHWPSLGVWGSPYSPPREDWSVYP----GPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPV 119
                LG    P  PP   + + P    G +         D    P   C +        
Sbjct: 236 -----LGAGPFPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGS-------- 282

Query: 120 GGGTSGSS---LPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKY 176
           GGG+ G         A   L P  + ++KAS P +              +T K+  K+  
Sbjct: 283 GGGSQGDEEAHASSSAAEELSPAPSESSKAS-PEKDSLGNSKGENAANWLTAKSGRKK-- 339

Query: 177 RVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKM 231
           R  YT HQ LELEKEF  N Y+T +R+ E++ ++ L++RQVKIWFQNRR K +KM
Sbjct: 340 RCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 394


>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
          Length = 283

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 71/232 (30%), Positives = 94/232 (40%), Gaps = 36/232 (15%)

Query: 40  PASNFAAAPAFSHYMGYPHMPSMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVN 99
           PA  F+A+P    YMG    P   P  P  G  G+       D S Y  P         +
Sbjct: 24  PAPEFSASPPACLYMG--RQPPPPPPHPFPGALGALEQGSPPDISPYEVPPLADDPAVAH 81

Query: 100 DVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAW 159
                PA                    +LP    G   P  A       P+R +  P+ W
Sbjct: 82  LHHHLPAQL------------------ALPHPPAGPF-PEGAEPGVLEEPNRVQ-LPFPW 121

Query: 160 MRKTVQVTGKTR-----------TKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAV 208
           M+ T     K +             ++ R  YT  Q LELEKEF  N+YI+  R+ ELAV
Sbjct: 122 MKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAV 181

Query: 209 NLGLSERQVKIWFQNRRAKERKMIKKKI--SQFENSGGSVQSDSD-SISPGE 257
            L L+ER +KIWFQNRR K +K   KK         GG  + + D +++ GE
Sbjct: 182 MLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGE 233


>gi|5031759 homeobox A11 [Homo sapiens]
          Length = 313

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 18/173 (10%)

Query: 72  WGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQ 131
           +G+P +    D   YPG  S     P    TS+ AA  +T         G  + SS    
Sbjct: 148 YGTPENLASSD---YPGDKSAEKGPPAATATSAAAAAAAT---------GAPATSSSDSG 195

Query: 132 AGGSLVPTDAGAAKASSPSR--SRHSPYAWMRKTVQVTGKT---RTKEKYRVVYTDHQRL 186
            GG    T A A +     R  S  SP +    T    G +   RT++K R  YT +Q  
Sbjct: 196 GGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKK-RCPYTKYQIR 254

Query: 187 ELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQF 239
           ELE+EF  + YI  +++ +L+  L L++RQVKIWFQNRR KE+K+ + ++  +
Sbjct: 255 ELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYY 307


>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
          Length = 348

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 11/109 (10%)

Query: 123 TSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTD 182
           +S  +L GQA       D G A   +P      P +    +   TGK R +   R  +T 
Sbjct: 208 SSDDNLTGQAAHK--EEDPGHALEETP------PSSGAAGSTTSTGKNRRR---RTAFTS 256

Query: 183 HQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKM 231
            Q LELEKEFHC +Y+++  +S++A  L LSE QVKIWFQNRRAK +++
Sbjct: 257 EQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRV 305


>gi|15029508 homeobox B9 [Homo sapiens]
          Length = 250

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 38/65 (58%), Positives = 46/65 (70%)

Query: 171 RTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERK 230
           R+  K R  YT +Q LELEKEF  N Y+T  R+ E+A  L LSERQVKIWFQNRR K +K
Sbjct: 183 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 242

Query: 231 MIKKK 235
           M K++
Sbjct: 243 MNKEQ 247


>gi|84570137 homeobox B3 [Homo sapiens]
          Length = 431

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 53/160 (33%), Positives = 69/160 (43%), Gaps = 30/160 (18%)

Query: 85  VYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTDAGAA 144
           ++P    +  T  + + +   A  C       G  G G SG    G  GG   P  + A+
Sbjct: 129 IFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAAS 188

Query: 145 KASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKS 204
           K +                             R  YT  Q +ELEKEFH NRY+   R+ 
Sbjct: 189 KRA-----------------------------RTAYTSAQLVELEKEFHFNRYLCRPRRV 219

Query: 205 ELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGG 244
           E+A  L LSERQ+KIWFQNRR K +K  K K     +SGG
Sbjct: 220 EMANLLNLSERQIKIWFQNRRMKYKKDQKAK-GLASSSGG 258


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.130    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,536,337
Number of Sequences: 37866
Number of extensions: 769630
Number of successful extensions: 6402
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 284
Number of HSP's that attempted gapping in prelim test: 4480
Number of HSP's gapped (non-prelim): 1980
length of query: 284
length of database: 18,247,518
effective HSP length: 101
effective length of query: 183
effective length of database: 14,423,052
effective search space: 2639418516
effective search space used: 2639418516
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press