BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4885127 caudal type homeobox 4 [Homo sapiens] (284 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4885127 caudal type homeobox 4 [Homo sapiens] 589 e-168 gi|121114296 caudal type homeobox 1 [Homo sapiens] 177 1e-44 gi|169636435 caudal type homeobox 2 [Homo sapiens] 158 4e-39 gi|24497517 homeobox A5 [Homo sapiens] 97 1e-20 gi|23397672 homeobox D4 [Homo sapiens] 86 4e-17 gi|194363768 homeobox D9 [Homo sapiens] 85 6e-17 gi|4504469 homeobox B5 [Homo sapiens] 84 1e-16 gi|148613882 homeobox A4 [Homo sapiens] 83 2e-16 gi|10140847 homeobox A2 [Homo sapiens] 82 4e-16 gi|85068580 homeobox B7 [Homo sapiens] 82 4e-16 gi|24497538 homeobox C4 [Homo sapiens] 82 5e-16 gi|24497540 homeobox C4 [Homo sapiens] 82 5e-16 gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 80 3e-15 gi|11321638 homeobox C5 [Homo sapiens] 79 3e-15 gi|24497533 homeobox C10 [Homo sapiens] 79 5e-15 gi|24497556 homeobox A7 [Homo sapiens] 79 6e-15 gi|23097236 homeobox A9 [Homo sapiens] 78 8e-15 gi|13273315 homeobox B4 [Homo sapiens] 78 8e-15 gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 77 2e-14 gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 77 2e-14 gi|23510368 homeobox D11 [Homo sapiens] 76 3e-14 gi|24497513 homeobox A3 isoform a [Homo sapiens] 76 3e-14 gi|13562112 homeobox A3 isoform a [Homo sapiens] 76 3e-14 gi|13489077 homeobox A6 [Homo sapiens] 75 7e-14 gi|182765442 homeobox A10 isoform a [Homo sapiens] 75 7e-14 gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 74 1e-13 gi|5031759 homeobox A11 [Homo sapiens] 74 1e-13 gi|45593144 gastrulation brain homeo box 2 [Homo sapiens] 74 1e-13 gi|15029508 homeobox B9 [Homo sapiens] 74 2e-13 gi|84570137 homeobox B3 [Homo sapiens] 74 2e-13 >gi|4885127 caudal type homeobox 4 [Homo sapiens] Length = 284 Score = 589 bits (1518), Expect = e-168 Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP 60 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP Sbjct: 1 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP 60 Query: 61 SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG 120 SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG Sbjct: 61 SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG 120 Query: 121 GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVY 180 GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVY Sbjct: 121 GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVY 180 Query: 181 TDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE 240 TDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE Sbjct: 181 TDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE 240 Query: 241 NSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE 284 NSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE Sbjct: 241 NSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE 284 >gi|121114296 caudal type homeobox 1 [Homo sapiens] Length = 265 Score = 177 bits (448), Expect = 1e-44 Identities = 106/243 (43%), Positives = 134/243 (55%), Gaps = 29/243 (11%) Query: 1 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP 60 MY +L+K++ +YPG P + G G G P A P + + Y H+ Sbjct: 1 MYVGYVLDKDSPVYPG----PARPASLGLGPQAYGPPAPPP----APPQYPDFSSYSHV- 51 Query: 61 SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG 120 +P WG+P+ P++DW+ GP +SPA+ + PV Sbjct: 52 --EPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPA-------ASPASLAFGPPPDFSPV- 101 Query: 121 GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQV-----TGKTRTKEK 175 + PG G L G SSP R +PY WMR++V +GKTRTK+K Sbjct: 102 -----PAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKDK 156 Query: 176 YRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKK 235 YRVVYTDHQRLELEKEFH +RYITI+RKSELA NLGL+ERQVKIWFQNRRAKERK+ KKK Sbjct: 157 YRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKK 216 Query: 236 ISQ 238 Q Sbjct: 217 QQQ 219 >gi|169636435 caudal type homeobox 2 [Homo sapiens] Length = 313 Score = 158 bits (400), Expect = 4e-39 Identities = 113/275 (41%), Positives = 139/275 (50%), Gaps = 61/275 (22%) Query: 1 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGY---- 56 MY S LL+K+ MYP ++ GG A NF + P + Y GY Sbjct: 1 MYVSYLLDKDVSMYPSSVRHSGGLNLA-------------PQNFVSPPQYPDYGGYHVAA 47 Query: 57 --------PHMPSMDPHWPSLGVWGSPYSPPREDWSVY-PGPSSTMGTVPVNDVTS-SPA 106 S P WP+ +G+P REDW+ Y PG ++ + + SPA Sbjct: 48 AAAAAANLDSAQSPGPSWPA--AYGAPL---REDWNGYAPGGAAAAANAVAHGLNGGSPA 102 Query: 107 AFCSTDYSNLG--------------PVGGGTSGSSL-----PGQAGGSLVPTDAGAAKAS 147 A + YS+ P + S L PG G P AA+ Sbjct: 103 A--AMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPG----PAATAAAEQL 156 Query: 148 SPSRSRHSPYAWMRKTVQVT----GKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRK 203 SP R + WMRK Q + KTRTK+KYRVVYTDHQRLELEKEFH +RYITI+RK Sbjct: 157 SPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRK 216 Query: 204 SELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQ 238 +ELA LGLSERQVKIWFQNRRAKERK+ KKK+ Q Sbjct: 217 AELAATLGLSERQVKIWFQNRRAKERKINKKKLQQ 251 >gi|24497517 homeobox A5 [Homo sapiens] Length = 270 Score = 97.4 bits (241), Expect = 1e-20 Identities = 85/238 (35%), Positives = 108/238 (45%), Gaps = 35/238 (14%) Query: 22 GGDGTAGTGGTGGGGSPMPASNFAA----APAFSHYMGYPHMPSMDPHWPSLGVWGSPYS 77 G D + G G+G GS A ++AA APA Y P+ H SP Sbjct: 51 GMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYS----QPATSTH--------SPQP 98 Query: 78 PPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLV 137 P +V P P S N +++S A S D G T SS G S Sbjct: 99 DPLPCSAVAPSPGSDSHHGGKNSLSNSSGA--SAD-------AGSTHISSREGVGTASGA 149 Query: 138 PTDAGAAKASSPSRSRHSP--------YAWMRKTVQVTGKTRTKE--KYRVVYTDHQRLE 187 DA A+ + ++S SP Y WMRK E + R YT +Q LE Sbjct: 150 EEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLE 209 Query: 188 LEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGGS 245 LEKEFH NRY+T +R+ E+A L LSERQ+KIWFQNRR K +K K K +GG+ Sbjct: 210 LEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGA 267 >gi|23397672 homeobox D4 [Homo sapiens] Length = 255 Score = 85.9 bits (211), Expect = 4e-17 Identities = 71/208 (34%), Positives = 96/208 (46%), Gaps = 28/208 (13%) Query: 70 GVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGS-SL 128 G G+ + PP +YP P G P S P + G GG G + Sbjct: 40 GAQGADFQPP----GLYPRPD--FGEQPFGG--SGPGPGSALPARGHGQEPGGPGGHYAA 91 Query: 129 PGQ---AGGSLVPTDAGAAKASSPSRSRHSP-----------YAWMRK----TVQVTGKT 170 PG+ A + P A+A S S + P Y WM+K +V Sbjct: 92 PGEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTG 151 Query: 171 RTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERK 230 ++ R YT Q LELEKEFH NRY+T +R+ E+A L LSERQ+KIWFQNRR K +K Sbjct: 152 GEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 211 Query: 231 MIKKKISQFENSGGSVQSD-SDSISPGE 257 K ++ +S S S S S++P + Sbjct: 212 DHKLPNTKGRSSSSSSSSSCSSSVAPSQ 239 >gi|194363768 homeobox D9 [Homo sapiens] Length = 352 Score = 85.1 bits (209), Expect = 6e-17 Identities = 81/244 (33%), Positives = 101/244 (41%), Gaps = 25/244 (10%) Query: 10 EAGMYPGTLMSP--GGDGTAGTGGTGGGGSPM--PASNFAAAPAFSHYMGYPHM-----P 60 E G Y + M P G G AG GG GGGG P P+ + HY P P Sbjct: 111 EPGRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAP 170 Query: 61 SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGT-VPVNDVTSSPAAFCSTDYSNLGPV 119 + S S R + SV + G N AA + GP Sbjct: 171 ATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAAT---GGTGPG 227 Query: 120 GG-----GTSGSSLPGQAGGSLVP---TDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTR 171 G GT GSS P +P + S P + + P + R Sbjct: 228 AGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHA----R 283 Query: 172 TKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKM 231 + K R YT +Q LELEKEF N Y+T R+ E+A L L+ERQVKIWFQNRR K +KM Sbjct: 284 STRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM 343 Query: 232 IKKK 235 K+K Sbjct: 344 SKEK 347 >gi|4504469 homeobox B5 [Homo sapiens] Length = 269 Score = 84.3 bits (207), Expect = 1e-16 Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 30/247 (12%) Query: 28 GTGGTGGGGSPMPASNFAAAPAFSHY---MGYPHMPSMDPHWPSLG----VWGSPYSPPR 80 G+G + G PA+ + +++ + + H+ ++G + +P PR Sbjct: 25 GSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSSASSSHFGAVGESSRAFPAPAQEPR 84 Query: 81 EDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTD 140 + S+ ++P + S A ++ S+ ++ + +A S P + Sbjct: 85 FRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQATSASSSANFTEIDEASASSEPEE 144 Query: 141 AGAAKASSPSRSRHSP-----------------YAWMRK---TVQVTGKTRTKEKYRVVY 180 A A++ SSPS +R P + WMRK + +TG ++ R Y Sbjct: 145 A-ASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMRKLHISHDMTGPDG--KRARTAY 201 Query: 181 TDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE 240 T +Q LELEKEFH NRY+T +R+ E+A L LSERQ+KIWFQNRR K +K K K Sbjct: 202 TRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLA 261 Query: 241 NSGGSVQ 247 +G + Q Sbjct: 262 TAGSAFQ 268 >gi|148613882 homeobox A4 [Homo sapiens] Length = 320 Score = 83.2 bits (204), Expect = 2e-16 Identities = 51/126 (40%), Positives = 68/126 (53%), Gaps = 13/126 (10%) Query: 157 YAWMRK----TVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGL 212 Y WM+K V + ++ R YT Q LELEKEFH NRY+T +R+ E+A L L Sbjct: 195 YPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCL 254 Query: 213 SERQVKIWFQNRRAKERKMIKKKISQFENSG---------GSVQSDSDSISPGELPNTFF 263 SERQVKIWFQNRR K +K K ++ +S G Q+ S + P P+T Sbjct: 255 SERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTST 314 Query: 264 TTPSAV 269 PS++ Sbjct: 315 PVPSSI 320 >gi|10140847 homeobox A2 [Homo sapiens] Length = 376 Score = 82.4 bits (202), Expect = 4e-16 Identities = 70/217 (32%), Positives = 97/217 (44%), Gaps = 44/217 (20%) Query: 90 SSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTDAGAAKASSP 149 SS++ T ++ T P F T +L P GS AGG P+ AG+ + P Sbjct: 34 SSSIKTSTLSHSTLIPPPFEQT-IPSLNP------GSHPRHGAGGRPKPSPAGSRGSPVP 86 Query: 150 SRSRHSP-YAWMRK-----------------TVQVTGKTRTKEK---------------Y 176 + + P Y WM++ T TG K Sbjct: 87 AGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRL 146 Query: 177 RVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKI 236 R YT+ Q LELEKEFH N+Y+ R+ E+A L L+ERQVK+WFQNRR K ++ + K Sbjct: 147 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKE 206 Query: 237 SQFENSGGSVQS--DSDSISPGELPNTFFTTPSAVRG 271 +Q NS G +S DS+ + E T F +V G Sbjct: 207 NQ--NSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSG 241 >gi|85068580 homeobox B7 [Homo sapiens] Length = 217 Score = 82.4 bits (202), Expect = 4e-16 Identities = 66/191 (34%), Positives = 87/191 (45%), Gaps = 50/191 (26%) Query: 83 WSVYPGPSSTMGTVPVNDVTS---------------SPAAFCSTDYSNLGPVGGGTSGSS 127 +S YP SS T + TS S A+F ++ L P GGG +G S Sbjct: 11 FSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAAS-MQGLYPGGGGMAGQS 69 Query: 128 LPG--QAGGSLVPTD-----------------AGAAKASSPSRSRHSP---------YAW 159 G AG L P+ +AKA+ R S Y W Sbjct: 70 AAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPW 129 Query: 160 MRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKI 219 MR + +++ R YT +Q LELEKEFH NRY+T +R+ E+A L L+ERQ+KI Sbjct: 130 MRSS------GTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKI 183 Query: 220 WFQNRRAKERK 230 WFQNRR K +K Sbjct: 184 WFQNRRMKWKK 194 >gi|24497538 homeobox C4 [Homo sapiens] Length = 264 Score = 82.0 bits (201), Expect = 5e-16 Identities = 62/195 (31%), Positives = 89/195 (45%), Gaps = 20/195 (10%) Query: 75 PYSPPREDW-------SVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSS 127 P PPR + + GP ++ G P P S P+ G ++ S Sbjct: 54 PPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEK--SQSLCEPAPLSGASASPS 111 Query: 128 LPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRK----TVQVTGKTRTKEKYRVVYTDH 183 A P +A + P Y WM+K TV ++ R YT Sbjct: 112 PAPPACSQPAPDHPSSAASKQPI-----VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQ 166 Query: 184 QRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENS- 242 Q LELEKEFH NRY+T +R+ E+A +L LSERQ+KIWFQNRR K +K + ++ ++ Sbjct: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAP 226 Query: 243 -GGSVQSDSDSISPG 256 G+ S + +PG Sbjct: 227 PAGAAPSTLSAATPG 241 >gi|24497540 homeobox C4 [Homo sapiens] Length = 264 Score = 82.0 bits (201), Expect = 5e-16 Identities = 62/195 (31%), Positives = 89/195 (45%), Gaps = 20/195 (10%) Query: 75 PYSPPREDW-------SVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSS 127 P PPR + + GP ++ G P P S P+ G ++ S Sbjct: 54 PPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEK--SQSLCEPAPLSGASASPS 111 Query: 128 LPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRK----TVQVTGKTRTKEKYRVVYTDH 183 A P +A + P Y WM+K TV ++ R YT Sbjct: 112 PAPPACSQPAPDHPSSAASKQPI-----VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQ 166 Query: 184 QRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENS- 242 Q LELEKEFH NRY+T +R+ E+A +L LSERQ+KIWFQNRR K +K + ++ ++ Sbjct: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAP 226 Query: 243 -GGSVQSDSDSISPG 256 G+ S + +PG Sbjct: 227 PAGAAPSTLSAATPG 241 >gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] Length = 254 Score = 79.7 bits (195), Expect = 3e-15 Identities = 78/237 (32%), Positives = 104/237 (43%), Gaps = 35/237 (14%) Query: 33 GGGGSPMPASNFAAAPAFSHYMGYPHMPSMDPHWPSLG---VWGSPYSPPREDW---SVY 86 G G S +P ++ P FS + + + +P + +P+S P+E+ + Sbjct: 29 GNGASGLP--HYPPTP-FSFHQKPDFLATATAAYPDFSASCLAATPHSLPQEEHIFTEQH 85 Query: 87 PG-PSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGG----GTSGSSL------PGQAGGS 135 P P S PV+D P N GP GG GTS L PG G Sbjct: 86 PAFPQSPNWHFPVSDARRRP---------NSGPAGGSKEMGTSSLGLVDTTGGPGDDYGV 136 Query: 136 LVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCN 195 L T K SS R S R + + K R K R +T Q ELE EF + Sbjct: 137 LGSTANETEKKSSRRRKESSDNQENRGKPEGSSKAR---KERTAFTKEQLRELEAEFAHH 193 Query: 196 RYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSDS 252 Y+T R+ E+AVNL LSERQVK+WFQNRR K +++ K Q + G D DS Sbjct: 194 NYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRV---KGGQPISPNGQDPEDGDS 247 >gi|11321638 homeobox C5 [Homo sapiens] Length = 222 Score = 79.3 bits (194), Expect = 3e-15 Identities = 43/79 (54%), Positives = 55/79 (69%), Gaps = 2/79 (2%) Query: 157 YAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQ 216 Y WM K + ++ +T K R YT +Q LELEKEFH NRY+T +R+ E+A NL L+ERQ Sbjct: 141 YPWMTK-LHMSHETDGKRS-RTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQ 198 Query: 217 VKIWFQNRRAKERKMIKKK 235 +KIWFQNRR K +K K K Sbjct: 199 IKIWFQNRRMKWKKDSKMK 217 >gi|24497533 homeobox C10 [Homo sapiens] Length = 342 Score = 79.0 bits (193), Expect = 5e-15 Identities = 61/205 (29%), Positives = 91/205 (44%), Gaps = 21/205 (10%) Query: 38 PMPASNFAA--APAFSHYMGYPHMPSMD--PHWPSLGVWGSPYSP-----PREDWSVYP- 87 P+P S P S+Y P ++D PH + +P+ PR + P Sbjct: 132 PLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAPFEQRASLNPRAEHLESPQ 191 Query: 88 -GPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTDAGAAKA 146 G + P +D + T+ S GP G + +A S T AK Sbjct: 192 LGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSPDTSDNEAKE 251 Query: 147 SSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSEL 206 ++ ++ W+ ++ K R YT HQ LELEKEF N Y+T +R+ E+ Sbjct: 252 EI--KAENTTGNWLT--------AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEI 301 Query: 207 AVNLGLSERQVKIWFQNRRAKERKM 231 + + L++RQVKIWFQNRR K +KM Sbjct: 302 SKTINLTDRQVKIWFQNRRMKLKKM 326 >gi|24497556 homeobox A7 [Homo sapiens] Length = 230 Score = 78.6 bits (192), Expect = 6e-15 Identities = 47/99 (47%), Positives = 62/99 (62%), Gaps = 8/99 (8%) Query: 132 AGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKE 191 A G+ TD GA ++ + R Y WMR + G R ++ R YT +Q LELEKE Sbjct: 97 AKGACDKTDEGALHGAAEANFRI--YPWMRSS----GPDR--KRGRQTYTRYQTLELEKE 148 Query: 192 FHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERK 230 FH NRY+T +R+ E+A L L+ERQ+KIWFQNRR K +K Sbjct: 149 FHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 187 >gi|23097236 homeobox A9 [Homo sapiens] Length = 272 Score = 78.2 bits (191), Expect = 8e-15 Identities = 68/228 (29%), Positives = 96/228 (42%), Gaps = 48/228 (21%) Query: 33 GGGGSPMPASNFAAAPA--FSHYMGYPHMPSMDP------------HW--PSLGVWGSPY 76 G +P+ A+ A PA + H+ +P++ P W P+ G Sbjct: 64 GASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAG 123 Query: 77 SPPREDWSVYPGP-SSTMGTVPVNDVTSSPAAFCSTDYS--------NLGPVGGGTSGSS 127 P + + P P S+ G P D + TDY+ P G S ++ Sbjct: 124 LPSSRPYGIKPEPLSARRGDCPTLDTHT----LSLTDYACGSPPVDREKQPSEGAFSENN 179 Query: 128 LPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLE 187 ++GG P D A+ W+ R+ K R YT HQ LE Sbjct: 180 AENESGGDKPPIDPNNPAAN-----------WLH--------ARSTRKKRCPYTKHQTLE 220 Query: 188 LEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKK 235 LEKEF N Y+T R+ E+A L L+ERQVKIWFQNRR K +K+ K + Sbjct: 221 LEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268 >gi|13273315 homeobox B4 [Homo sapiens] Length = 251 Score = 78.2 bits (191), Expect = 8e-15 Identities = 44/93 (47%), Positives = 56/93 (60%), Gaps = 4/93 (4%) Query: 157 YAWMRK----TVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGL 212 Y WMRK TV ++ R YT Q LELEKEFH NRY+T +R+ E+A L L Sbjct: 142 YPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCL 201 Query: 213 SERQVKIWFQNRRAKERKMIKKKISQFENSGGS 245 SERQ+KIWFQNRR K +K K ++ + G + Sbjct: 202 SERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAA 234 >gi|24497544 homeobox C6 isoform 2 [Homo sapiens] Length = 153 Score = 76.6 bits (187), Expect = 2e-14 Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 3/96 (3%) Query: 157 YAWMRK--TVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSE 214 Y WM++ + G + + R +Y+ +Q LELEKEFH NRY+T +R+ E+A L L+E Sbjct: 41 YPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTE 100 Query: 215 RQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDS 250 RQ+KIWFQNRR K +K S GG +DS Sbjct: 101 RQIKIWFQNRRMKWKKE-SNLTSTLSGGGGGATADS 135 >gi|4758554 homeobox C6 isoform 1 [Homo sapiens] Length = 235 Score = 76.6 bits (187), Expect = 2e-14 Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 3/96 (3%) Query: 157 YAWMRK--TVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSE 214 Y WM++ + G + + R +Y+ +Q LELEKEFH NRY+T +R+ E+A L L+E Sbjct: 123 YPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTE 182 Query: 215 RQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDS 250 RQ+KIWFQNRR K +K S GG +DS Sbjct: 183 RQIKIWFQNRRMKWKKE-SNLTSTLSGGGGGATADS 217 >gi|23510368 homeobox D11 [Homo sapiens] Length = 338 Score = 76.3 bits (186), Expect = 3e-14 Identities = 78/271 (28%), Positives = 101/271 (37%), Gaps = 72/271 (26%) Query: 20 SPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMPSMDPHW------------- 66 S GG + G G GGGG+ A +AAA A + +M Sbjct: 83 SAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFK 142 Query: 67 ---PSLGVWGSPYSPPREDWSVY--------------------PGPSSTMGTVPVNDVTS 103 P G P+ P + Y PGP P Sbjct: 143 APEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAPP 202 Query: 104 SPAAFCSTDYSNLGPVGGG-------TSGSSLPGQAGGSL-----VPTDAGAAKASS--- 148 P G GGG T GS G A GS P +AGA K+SS Sbjct: 203 QPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVA 262 Query: 149 PSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAV 208 P RSR K R YT +Q ELE+EF N YI +++ +L+ Sbjct: 263 PQRSR---------------------KKRCPYTKYQIRELEREFFFNVYINKEKRLQLSR 301 Query: 209 NLGLSERQVKIWFQNRRAKERKMIKKKISQF 239 L L++RQVKIWFQNRR KE+K+ + ++ F Sbjct: 302 MLNLTDRQVKIWFQNRRMKEKKLNRDRLQYF 332 >gi|24497513 homeobox A3 isoform a [Homo sapiens] Length = 443 Score = 76.3 bits (186), Expect = 3e-14 Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 27/155 (17%) Query: 124 SGSSLPGQAGGSLVPTDAGAAKA---SSPSRSRHSPYAWMRKTVQVTGKTRTK------- 173 S +S P A + PT A AAK+ +SP+ ++ + WM+++ Q T + + Sbjct: 123 SSASPPQNASNN--PTPANAAKSPLLNSPTVAKQI-FPWMKESRQNTKQKTSSSSSGESC 179 Query: 174 ------------EKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWF 221 ++ R YT Q +ELEKEFH NRY+ R+ E+A L L+ERQ+KIWF Sbjct: 180 AGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF 239 Query: 222 QNRRAKERKMIKKKISQFENSGGSVQSDSDSISPG 256 QNRR K +K K K +SGG S S + PG Sbjct: 240 QNRRMKYKKDQKGK-GMLTSSGGQSPSRS-PVPPG 272 Score = 31.2 bits (69), Expect = 1.1 Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 10/99 (10%) Query: 38 PMPASNFAAAPAFSHYMGYPHMPSMDPHWPSL---GVWGSPY--SPPREDWSVYPGPSST 92 P P + AA A G P DPH L G +G+P+ P Y P S Sbjct: 323 PPPQKRYTAAGA-----GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSN 377 Query: 93 MGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQ 131 G AA + DY GP+G G PG+ Sbjct: 378 SGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGE 416 >gi|13562112 homeobox A3 isoform a [Homo sapiens] Length = 443 Score = 76.3 bits (186), Expect = 3e-14 Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 27/155 (17%) Query: 124 SGSSLPGQAGGSLVPTDAGAAKA---SSPSRSRHSPYAWMRKTVQVTGKTRTK------- 173 S +S P A + PT A AAK+ +SP+ ++ + WM+++ Q T + + Sbjct: 123 SSASPPQNASNN--PTPANAAKSPLLNSPTVAKQI-FPWMKESRQNTKQKTSSSSSGESC 179 Query: 174 ------------EKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWF 221 ++ R YT Q +ELEKEFH NRY+ R+ E+A L L+ERQ+KIWF Sbjct: 180 AGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF 239 Query: 222 QNRRAKERKMIKKKISQFENSGGSVQSDSDSISPG 256 QNRR K +K K K +SGG S S + PG Sbjct: 240 QNRRMKYKKDQKGK-GMLTSSGGQSPSRS-PVPPG 272 Score = 31.2 bits (69), Expect = 1.1 Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 10/99 (10%) Query: 38 PMPASNFAAAPAFSHYMGYPHMPSMDPHWPSL---GVWGSPY--SPPREDWSVYPGPSST 92 P P + AA A G P DPH L G +G+P+ P Y P S Sbjct: 323 PPPQKRYTAAGA-----GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSN 377 Query: 93 MGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQ 131 G AA + DY GP+G G PG+ Sbjct: 378 SGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGE 416 >gi|13489077 homeobox A6 [Homo sapiens] Length = 233 Score = 75.1 bits (183), Expect = 7e-14 Identities = 56/146 (38%), Positives = 72/146 (49%), Gaps = 11/146 (7%) Query: 108 FCSTDYSNLGPVGGGTS---GSSLPGQAGGSLVP-TDAGAAKA---SSPSRSRHSP-YAW 159 + D S P G G G L P + +G KA R SP Y W Sbjct: 80 YSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPW 139 Query: 160 MRKTVQVTGKTRTKE--KYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQV 217 M++ G + R YT +Q LELEKEFH NRY+T +R+ E+A L L+ERQ+ Sbjct: 140 MQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQI 199 Query: 218 KIWFQNRRAKERKMIKKKISQFENSG 243 KIWFQNRR K +K K I+ + SG Sbjct: 200 KIWFQNRRMKWKKE-NKLINSTQPSG 224 >gi|182765442 homeobox A10 isoform a [Homo sapiens] Length = 410 Score = 75.1 bits (183), Expect = 7e-14 Identities = 69/235 (29%), Positives = 95/235 (40%), Gaps = 48/235 (20%) Query: 5 CLLEKEAGM-YPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMPSMD 63 C L +G+ PG GTA G+GGGG+ Sbjct: 200 CALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQ------------------------ 235 Query: 64 PHWPSLGVWGSPYSPPREDWSVYP----GPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPV 119 LG P PP + + P G + D P C + Sbjct: 236 -----LGAGPFPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGS-------- 282 Query: 120 GGGTSGSS---LPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKY 176 GGG+ G A L P + ++KAS P + +T K+ K+ Sbjct: 283 GGGSQGDEEAHASSSAAEELSPAPSESSKAS-PEKDSLGNSKGENAANWLTAKSGRKK-- 339 Query: 177 RVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKM 231 R YT HQ LELEKEF N Y+T +R+ E++ ++ L++RQVKIWFQNRR K +KM Sbjct: 340 RCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 394 >gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] Length = 283 Score = 74.3 bits (181), Expect = 1e-13 Identities = 71/232 (30%), Positives = 94/232 (40%), Gaps = 36/232 (15%) Query: 40 PASNFAAAPAFSHYMGYPHMPSMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVN 99 PA F+A+P YMG P P P G G+ D S Y P + Sbjct: 24 PAPEFSASPPACLYMG--RQPPPPPPHPFPGALGALEQGSPPDISPYEVPPLADDPAVAH 81 Query: 100 DVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAW 159 PA +LP G P A P+R + P+ W Sbjct: 82 LHHHLPAQL------------------ALPHPPAGPF-PEGAEPGVLEEPNRVQ-LPFPW 121 Query: 160 MRKTVQVTGKTR-----------TKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAV 208 M+ T K + ++ R YT Q LELEKEF N+YI+ R+ ELAV Sbjct: 122 MKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAV 181 Query: 209 NLGLSERQVKIWFQNRRAKERKMIKKKI--SQFENSGGSVQSDSD-SISPGE 257 L L+ER +KIWFQNRR K +K KK GG + + D +++ GE Sbjct: 182 MLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGE 233 >gi|5031759 homeobox A11 [Homo sapiens] Length = 313 Score = 74.3 bits (181), Expect = 1e-13 Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 18/173 (10%) Query: 72 WGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQ 131 +G+P + D YPG S P TS+ AA +T G + SS Sbjct: 148 YGTPENLASSD---YPGDKSAEKGPPAATATSAAAAAAAT---------GAPATSSSDSG 195 Query: 132 AGGSLVPTDAGAAKASSPSR--SRHSPYAWMRKTVQVTGKT---RTKEKYRVVYTDHQRL 186 GG T A A + R S SP + T G + RT++K R YT +Q Sbjct: 196 GGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKK-RCPYTKYQIR 254 Query: 187 ELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQF 239 ELE+EF + YI +++ +L+ L L++RQVKIWFQNRR KE+K+ + ++ + Sbjct: 255 ELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYY 307 >gi|45593144 gastrulation brain homeo box 2 [Homo sapiens] Length = 348 Score = 74.3 bits (181), Expect = 1e-13 Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 11/109 (10%) Query: 123 TSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTD 182 +S +L GQA D G A +P P + + TGK R + R +T Sbjct: 208 SSDDNLTGQAAHK--EEDPGHALEETP------PSSGAAGSTTSTGKNRRR---RTAFTS 256 Query: 183 HQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKM 231 Q LELEKEFHC +Y+++ +S++A L LSE QVKIWFQNRRAK +++ Sbjct: 257 EQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRV 305 >gi|15029508 homeobox B9 [Homo sapiens] Length = 250 Score = 73.6 bits (179), Expect = 2e-13 Identities = 38/65 (58%), Positives = 46/65 (70%) Query: 171 RTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERK 230 R+ K R YT +Q LELEKEF N Y+T R+ E+A L LSERQVKIWFQNRR K +K Sbjct: 183 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 242 Query: 231 MIKKK 235 M K++ Sbjct: 243 MNKEQ 247 >gi|84570137 homeobox B3 [Homo sapiens] Length = 431 Score = 73.6 bits (179), Expect = 2e-13 Identities = 53/160 (33%), Positives = 69/160 (43%), Gaps = 30/160 (18%) Query: 85 VYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTDAGAA 144 ++P + T + + + A C G G G SG G GG P + A+ Sbjct: 129 IFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAAS 188 Query: 145 KASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKS 204 K + R YT Q +ELEKEFH NRY+ R+ Sbjct: 189 KRA-----------------------------RTAYTSAQLVELEKEFHFNRYLCRPRRV 219 Query: 205 ELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGG 244 E+A L LSERQ+KIWFQNRR K +K K K +SGG Sbjct: 220 EMANLLNLSERQIKIWFQNRRMKYKKDQKAK-GLASSSGG 258 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.312 0.130 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,536,337 Number of Sequences: 37866 Number of extensions: 769630 Number of successful extensions: 6402 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 333 Number of HSP's successfully gapped in prelim test: 284 Number of HSP's that attempted gapping in prelim test: 4480 Number of HSP's gapped (non-prelim): 1980 length of query: 284 length of database: 18,247,518 effective HSP length: 101 effective length of query: 183 effective length of database: 14,423,052 effective search space: 2639418516 effective search space used: 2639418516 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.