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Search of human proteins with 48375167
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48375167 microtubule-associated protein 6 isoform 2 [Homo
sapiens]
(439 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48375167 microtubule-associated protein 6 isoform 2 [Homo sap... 896 0.0
gi|48375173 microtubule-associated protein 6 isoform 1 [Homo sap... 896 0.0
gi|13376306 MAP6 domain containing 1 [Homo sapiens] 77 4e-14
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 60 4e-09
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 60 4e-09
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 60 4e-09
gi|110832843 TBP-associated factor 4 [Homo sapiens] 54 2e-07
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 52 1e-06
gi|112421108 capicua homolog [Homo sapiens] 52 1e-06
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 51 2e-06
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 50 3e-06
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 50 3e-06
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 50 3e-06
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 50 3e-06
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 50 4e-06
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 50 5e-06
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 49 9e-06
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 49 1e-05
gi|30089916 phosphofurin acidic cluster sorting protein 1 [Homo ... 47 3e-05
gi|4506321 protein tyrosine phosphatase, receptor type, N precur... 46 8e-05
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 46 8e-05
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 45 1e-04
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 45 1e-04
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 45 1e-04
gi|73476377 LBXCOR1 homolog [Homo sapiens] 45 1e-04
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 45 2e-04
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 45 2e-04
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 45 2e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 45 2e-04
gi|153792074 proline rich 12 [Homo sapiens] 45 2e-04
>gi|48375167 microtubule-associated protein 6 isoform 2 [Homo
sapiens]
Length = 439
Score = 896 bits (2316), Expect = 0.0
Identities = 439/439 (100%), Positives = 439/439 (100%)
Query: 1 MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPP 60
MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPP
Sbjct: 1 MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPP 60
Query: 61 SARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSV 120
SARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSV
Sbjct: 61 SARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSV 120
Query: 121 MRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQI 180
MRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQI
Sbjct: 121 MRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQI 180
Query: 181 SAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRR 240
SAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRR
Sbjct: 181 SAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRR 240
Query: 241 KAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSS 300
KAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSS
Sbjct: 241 KAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSS 300
Query: 301 YRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRI 360
YRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRI
Sbjct: 301 YRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRI 360
Query: 361 RSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTK 420
RSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTK
Sbjct: 361 RSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTK 420
Query: 421 PDDKEQSKEMNNKLAEAKE 439
PDDKEQSKEMNNKLAEAKE
Sbjct: 421 PDDKEQSKEMNNKLAEAKE 439
>gi|48375173 microtubule-associated protein 6 isoform 1 [Homo
sapiens]
Length = 813
Score = 896 bits (2316), Expect = 0.0
Identities = 439/439 (100%), Positives = 439/439 (100%)
Query: 1 MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPP 60
MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPP
Sbjct: 1 MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPP 60
Query: 61 SARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSV 120
SARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSV
Sbjct: 61 SARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSV 120
Query: 121 MRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQI 180
MRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQI
Sbjct: 121 MRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQI 180
Query: 181 SAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRR 240
SAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRR
Sbjct: 181 SAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRR 240
Query: 241 KAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSS 300
KAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSS
Sbjct: 241 KAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSS 300
Query: 301 YRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRI 360
YRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRI
Sbjct: 301 YRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRI 360
Query: 361 RSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTK 420
RSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTK
Sbjct: 361 RSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTK 420
Query: 421 PDDKEQSKEMNNKLAEAKE 439
PDDKEQSKEMNNKLAEAKE
Sbjct: 421 PDDKEQSKEMNNKLAEAKE 439
>gi|13376306 MAP6 domain containing 1 [Homo sapiens]
Length = 199
Score = 76.6 bits (187), Expect = 4e-14
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 1 MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEA-TEHPG----APPQPPPPQQQAQP 55
MAWPCI+R CC+AR WNQLD++D+AVPL YS+ +E PG A + PP
Sbjct: 1 MAWPCISRLCCLARRWNQLDRSDVAVPLTLHGYSDLDSEEPGTGGAASRRGQPPAGARDS 60
Query: 56 ALAPPSA---RAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPG----- 107
P R + T PA G D G PG G R ++ + P PG
Sbjct: 61 GRDVPLTQYQRDFGLWTTPA-GPKDP---PPGRGPGAGGRRGKSSAQSSAPPAPGARGVY 116
Query: 108 ---LGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPR 140
+G + + RQ+++AW +P S + +
Sbjct: 117 VLPIGDADAAAAVTTSYRQEFQAWTGVKPSRSTKTK 152
Score = 40.8 bits (94), Expect = 0.002
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 292 EVASAVSSSYRNEFRAWTDIKPVKPIKAKP 321
+ A+AV++SYR EF+AWT +KP + K KP
Sbjct: 124 DAAAAVTTSYRQEFQAWTGVKPSRSTKTKP 153
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 60.1 bits (144), Expect = 4e-09
Identities = 76/290 (26%), Positives = 101/290 (34%), Gaps = 33/290 (11%)
Query: 16 WNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPA--LAPPSARAVAIETQPAQ 73
W +L P + + PG PQP Q +P + PP V + P +
Sbjct: 74 WRRLSADRWPRPASLSPRAALASAPGQKPQPARQAQLPRPVSGVRPPPRGRVGLSQAPGR 133
Query: 74 GELDAVARATG-----PAPGPTGEREPAAGPGRSG-----------PGPGLGSGSTSGPA 117
L A ARA G P+P E PA+ SG PGP G GS
Sbjct: 134 -PLGACARAKGIRLVNPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAER-T 191
Query: 118 DSVMRQDYRAWKVQRPE----PSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDH-- 171
+ + + R PE P CR S P + +K R PLPR
Sbjct: 192 NHIPKDKQRVAAPPPPERPRVPFCRGSSGLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLS 251
Query: 172 --PWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGA--GGLAA 227
P S++ A P +P R P + P A E R +P A GG ++
Sbjct: 252 EVPSTRPLCATSSSHSAPLPFFWSPLRNPSPR---PAPACGELRLGRLSPPRADTGGSSS 308
Query: 228 GKASGADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGR 277
G SG D + A PA A G P + + A GP + R
Sbjct: 309 GGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNPAESRRGPGPAQGPPSRR 358
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 60.1 bits (144), Expect = 4e-09
Identities = 76/290 (26%), Positives = 101/290 (34%), Gaps = 33/290 (11%)
Query: 16 WNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPA--LAPPSARAVAIETQPAQ 73
W +L P + + PG PQP Q +P + PP V + P +
Sbjct: 74 WRRLSADRWPRPASLSPRAALASAPGQKPQPARQAQLPRPVSGVRPPPRGRVGLSQAPGR 133
Query: 74 GELDAVARATG-----PAPGPTGEREPAAGPGRSG-----------PGPGLGSGSTSGPA 117
L A ARA G P+P E PA+ SG PGP G GS
Sbjct: 134 -PLGACARAKGIRLVNPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAER-T 191
Query: 118 DSVMRQDYRAWKVQRPE----PSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDH-- 171
+ + + R PE P CR S P + +K R PLPR
Sbjct: 192 NHIPKDKQRVAAPPPPERPRVPFCRGSSGLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLS 251
Query: 172 --PWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGA--GGLAA 227
P S++ A P +P R P + P A E R +P A GG ++
Sbjct: 252 EVPSTRPLCATSSSHSAPLPFFWSPLRNPSPR---PAPACGELRLGRLSPPRADTGGSSS 308
Query: 228 GKASGADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGR 277
G SG D + A PA A G P + + A GP + R
Sbjct: 309 GGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNPAESRRGPGPAQGPPSRR 358
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 60.1 bits (144), Expect = 4e-09
Identities = 76/290 (26%), Positives = 101/290 (34%), Gaps = 33/290 (11%)
Query: 16 WNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPA--LAPPSARAVAIETQPAQ 73
W +L P + + PG PQP Q +P + PP V + P +
Sbjct: 74 WRRLSADRWPRPASLSPRAALASAPGQKPQPARQAQLPRPVSGVRPPPRGRVGLSQAPGR 133
Query: 74 GELDAVARATG-----PAPGPTGEREPAAGPGRSG-----------PGPGLGSGSTSGPA 117
L A ARA G P+P E PA+ SG PGP G GS
Sbjct: 134 -PLGACARAKGIRLVNPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAER-T 191
Query: 118 DSVMRQDYRAWKVQRPE----PSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDH-- 171
+ + + R PE P CR S P + +K R PLPR
Sbjct: 192 NHIPKDKQRVAAPPPPERPRVPFCRGSSGLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLS 251
Query: 172 --PWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGA--GGLAA 227
P S++ A P +P R P + P A E R +P A GG ++
Sbjct: 252 EVPSTRPLCATSSSHSAPLPFFWSPLRNPSPR---PAPACGELRLGRLSPPRADTGGSSS 308
Query: 228 GKASGADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGR 277
G SG D + A PA A G P + + A GP + R
Sbjct: 309 GGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNPAESRRGPGPAQGPPSRR 358
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 54.3 bits (129), Expect = 2e-07
Identities = 73/262 (27%), Positives = 86/262 (32%), Gaps = 42/262 (16%)
Query: 40 PGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPA--- 96
P P P PP + +P PP A + PA A A A GP P P G +PA
Sbjct: 113 PLVPAGPAPPAAKLRP---PPEGSAGSCAPVPA-----AAAVAAGPEPAPAGPAKPAGPA 164
Query: 97 -----AGPGRS---GPGPGLGSGSTSGPADSVMRQDYRAW----KVQRPEPSC--RPRSE 142
AGPG GPGPG G G +GP + A P S +
Sbjct: 165 ALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAA 224
Query: 143 YQPSDAPFERETQYQKD----FRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRP 198
P P T Q A P P P P P +AA P R P
Sbjct: 225 LLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPP 284
Query: 199 QSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQ 258
P A A A GG+ G A A A GPA + +
Sbjct: 285 GHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAA--------GGPAGVSGQPGPGAAAA 336
Query: 259 TPLPAAQAQ-----VQATGPEA 275
P P +A+ VQA P A
Sbjct: 337 APAPGVKAESPKRVVQAAPPAA 358
Score = 36.6 bits (83), Expect = 0.046
Identities = 61/233 (26%), Positives = 79/233 (33%), Gaps = 26/233 (11%)
Query: 38 EHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPG-PTGEREPA 96
E P Q PP Q A P S A + QG L + A PAPG PTG + A
Sbjct: 345 ESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGA 404
Query: 97 AGP-----GRSGPGPGLGSGSTSGPADSVMR------QDYRAWKVQRPEPSCRPRSEY-Q 144
AG R+ G +T P R Q P RSE Q
Sbjct: 405 AGAVTQSLSRTPTATTSGIRATLTPTVLAPRLPQPPQNPTNIQNFQLPPGMVLVRSENGQ 464
Query: 145 PSDAPFERETQYQKDFRAWPLPRRGDHPWIP---KPVQISAASQASAPILGAPKR----- 196
P + Q Q A P P P PVQIS PI+
Sbjct: 465 LLMIPQQALAQMQAQAHAQPQTTMAPRPATPTSAPPVQISTVQAPGTPIIARQVTPTTII 524
Query: 197 RPQSQERWPVQAAAEAR-----EQEAAPGGAGGLAAGKASGADERDTRRKAGP 244
+ SQ + VQ +A + + + GGA A+ + A + T ++ P
Sbjct: 525 KQVSQAQTTVQPSATLQRSPGVQPQLVLGGAAQTASLGTATAVQTGTPQRTVP 577
Score = 35.4 bits (80), Expect = 0.10
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 36 ATEHPGAPPQPPPPQQQAQPALA--------PPSARAVAIETQPAQGELDAVARATGPAP 87
A P AP PPP A LA PP+A A A+ A + A PAP
Sbjct: 259 AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTA-APAVPPPAAAQNGGSAGAAPAPAP 317
Query: 88 ---GPTG-EREPAAGPGRSGPGPGLGSGS 112
GP G +P G + P PG+ + S
Sbjct: 318 AAGGPAGVSGQPGPGAAAAAPAPGVKAES 346
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 51.6 bits (122), Expect = 1e-06
Identities = 57/209 (27%), Positives = 72/209 (34%), Gaps = 22/209 (10%)
Query: 43 PPQPPPPQQQA--QPALAPPSARAVAIETQPAQGELDAVARATGPAPG-----PTGEREP 95
PPQ PPPQQ QP P + P VA+ GPAPG P P
Sbjct: 73 PPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAP 132
Query: 96 AAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQ 155
A P SG PG G G T P +V A P S P + Q P
Sbjct: 133 PATPPTSGAPPGSGPGPTPTPPPAVTSAPPGA-PPPTPPSSGVPTTPPQAGGPPPPPAAV 191
Query: 156 YQKDFRAWPLPRRGDHPWIPKPVQISAASQ-ASAPILGAPKRRPQSQERWPVQAAA---- 210
P P++G P PK ++ + P L P P+ R +
Sbjct: 192 PGPG----PGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQH 247
Query: 211 -----EAREQEAAPGGAGGLAAGKASGAD 234
+ Q PGG GG + K S ++
Sbjct: 248 HPPYHQQHHQGPPPGGPGGRSEEKISDSE 276
Score = 48.9 bits (115), Expect = 9e-06
Identities = 32/82 (39%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 40 PGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQ--GELDAVARATGPAPGP---TGERE 94
PG P PPP A P PP+ + + T P Q G A GP PGP G
Sbjct: 147 PGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGG 206
Query: 95 PAAGPGRSGPGPGLGSG-STSG 115
P G GP PG G G ST G
Sbjct: 207 PKGGKMPGGPKPGGGPGLSTPG 228
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 51.6 bits (122), Expect = 1e-06
Identities = 98/411 (23%), Positives = 139/411 (33%), Gaps = 76/411 (18%)
Query: 27 PLVFTKYSEATEHPGAP---------PQPPPPQQQAQPALAPPS-ARAVAIETQPAQGEL 76
P+ + A PG P P P AQP+ APPS VA T P
Sbjct: 1074 PVPSPQLPPACAAPGGPVITAFYSGSPAPTSSAPLAQPSQAPPSLVYTVATSTTPPA--- 1130
Query: 77 DAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPS 136
A GP P P A P + P P +GS M A K QRP P
Sbjct: 1131 -ATILPKGP-PAPA-----TATPAPTSPFPSATAGS--------MTYSLVAPKAQRPSPK 1175
Query: 137 CRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKR 196
+ + + P + R P PR+ P P PV+ A ++ P
Sbjct: 1176 APQKVKAAIASIPV-GSFEAGASGRPGPAPRQ---PLEPGPVREPTAPESELEGQPTPPA 1231
Query: 197 RPQSQERWPVQAAAE------AREQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIV-- 248
P E W A + A E+ +A G + +S +D W V
Sbjct: 1232 PPPLPETWTPTARSSPPLPPPAEERTSAKGPETMASKFPSSSSD-----------WRVPG 1280
Query: 249 RRAEGLGHEQTPLPAAQAQVQATG--PEAGRGRAAADALNRQIREEVASAVSSSYRNEFR 306
+ E G TP A A A G E+ GRAA D R+ V
Sbjct: 1281 QGLENRGEPPTPPSPAPAPAVAPGGSSESSSGRAAGDTPERKEAAGTGKKVK-------- 1332
Query: 307 AWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYSE 366
V+P K + D++++ E + +F A P +V+ ++SL +
Sbjct: 1333 -------VRPPPLKKTFDSVDNRVLSEVDFEERF---AELPEFRPEEVLPSPTLQSLATS 1382
Query: 367 P---FKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAE 414
P K K S + S P RK + + + S + KSA+
Sbjct: 1383 PRAILGSYRKKRKNSTDLDSAPEDPTS--PKRKMRRRSSCSSEPNTPKSAK 1431
Score = 38.1 bits (87), Expect = 0.016
Identities = 48/161 (29%), Positives = 65/161 (40%), Gaps = 37/161 (22%)
Query: 42 APPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGR 101
AP QP P Q ++ P++ VA E AVA PG TG +P PG
Sbjct: 45 APSQPDPSVQPSEAQ--QPASHPVASNQSKEPAESAAVAHER--PPGGTGSADPERPPGA 100
Query: 102 S-----GPGP---------GLGSGST-----SGP-----ADSVMRQDY-------RAWKV 130
+ GPGP G G T SGP DS D+ + ++
Sbjct: 101 TCPESPGPGPPHPLGVVESGKGPPPTTEEEASGPPGEPRLDSETESDHDDAFLSIMSPEI 160
Query: 131 QRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDH 171
Q P P + R++ S P ER++ +KD R+ P R DH
Sbjct: 161 QLPLPPGKRRTQ-SLSALPKERDSSSEKDGRS-PNKREKDH 199
Score = 30.8 bits (68), Expect = 2.5
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 21 KADIAVPLVFTKYSEATEHPG-APPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAV 79
KA IA V + + A+ PG AP QP P +P P + T PA L
Sbjct: 1181 KAAIASIPVGSFEAGASGRPGPAPRQPLEPGPVREPTA--PESELEGQPTPPAPPPLPET 1238
Query: 80 ----ARATGPAPGPTGEREPAAGP 99
AR++ P P P ER A GP
Sbjct: 1239 WTPTARSSPPLPPPAEERTSAKGP 1262
Score = 30.4 bits (67), Expect = 3.3
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 40 PGAP---PQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPA 96
PGA P PPP A PA P A T P+ A A P P +G +P
Sbjct: 1529 PGAEAPLPVPPPTGTAAAPAPTPSPAGGPD-PTSPSSDSGTAQAAPPLPPPPESGPGQPG 1587
Query: 97 --AGPGRSGPGPGLGSGST 113
P S P PG + +T
Sbjct: 1588 WEGAPQPSPPPPGPSTAAT 1606
Score = 28.9 bits (63), Expect = 9.7
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 43 PPQPP-PPQQQAQPALAPPSARAVAIETQPAQGELDAVAR---ATGPAPGPTGEREPAAG 98
PP PP PP + + PS+ A + PA A +G + AG
Sbjct: 514 PPGPPDPPVAFGKGYGSAPSSSA----SSPASSSASAATSFSLGSGTFKAQESGQGSTAG 569
Query: 99 PGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPE 134
P R P PG G +T A + D ++ +RPE
Sbjct: 570 PLRPPP-PGAGGPATPSKATRFLPMDPATFRRKRPE 604
Score = 28.9 bits (63), Expect = 9.7
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 51 QQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGS 110
Q A P PP A A + P G A PAP P+ PA GP + P G+
Sbjct: 1520 QAATPTEQPPGAEA-PLPVPPPTGT------AAAPAPTPS----PAGGPDPTSPSSDSGT 1568
Query: 111 GSTSGP 116
+ P
Sbjct: 1569 AQAAPP 1574
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 51.2 bits (121), Expect = 2e-06
Identities = 98/406 (24%), Positives = 137/406 (33%), Gaps = 90/406 (22%)
Query: 31 TKYSEATEHPGAPPQPP----PPQQQAQPALAPP-------SARAVAIETQPAQGELDAV 79
T+ E P PP PP PP Q QP PP + A +E Q
Sbjct: 764 TQEEEKKPPPALPPPPPLAKFPPPSQPQPPPPPPPSPASLLKSLASVLEGQKYCYRGTGA 823
Query: 80 ARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRP 139
A +T P P PT + P G + P + S G P+PS
Sbjct: 824 AVSTRPGPLPTTQYSPGPPSGATALPPTSAAPSAQG----------------SPQPSASS 867
Query: 140 RSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQ 199
S++ S P+ RE R G+ P +P P+ P L P R +
Sbjct: 868 SSQFSTSGGPWARER------------RAGEEP-VPGPM----TPTQPPPPLSLPPARSE 910
Query: 200 SQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQT 259
S+ + A E + S D D A PA G E+
Sbjct: 911 SEVLEEISRACETLVERVG-----------RSATDPADPVDTAEPA-------DSGTERL 952
Query: 260 PLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVKPI-- 317
LP AQA+ EAG A + + R+ +E +R RA D +P
Sbjct: 953 -LPPAQAK-----EEAGGVAAVSGSCKRRQKEH-----QKEHRRHRRACKDSVGRRPREG 1001
Query: 318 KAKPQYKPPDDK----MVHETSYSAQFKG-EASKPTTADNKVIDRRRIRSLYSEPFKEPP 372
+AK + K P +K + + S + +G E S+P D PP
Sbjct: 1002 RAKAKAKVPKEKSRRVLGNLDLQSEEIQGREKSRP--------DLGGASKAKPPTAPAPP 1053
Query: 373 KVEKPSVQSSKPKKTSASHKPTRKAKDKQAVS-GQAAKKKS-AEGP 416
PS Q + P + K +A VS K +S +EGP
Sbjct: 1054 SAPAPSAQPTPPSASVPGKKAREEAPGPPGVSRADMLKLRSLSEGP 1099
Score = 32.0 bits (71), Expect = 1.1
Identities = 65/300 (21%), Positives = 104/300 (34%), Gaps = 31/300 (10%)
Query: 43 PPQP-PPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPA-AGPG 100
PP+P PPP + L PP++R ++ TQ + T + +G + AGP
Sbjct: 511 PPRPAPPPLPHREGFLGPPASR-FSVGTQDSHTPPTPPTPTTSSSNSNSGSHSSSPAGPV 569
Query: 101 RSGPGPGLGSG---STSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQ 157
P P L P+ + QD + P P S +Q + F R +
Sbjct: 570 SFPPPPYLARSIDPLPRPPSPAQNPQDPPLVPLTLALPPAPPSSCHQNTSGSFRRPESPR 629
Query: 158 KDFRAWPLPRRGDHPWIPKPVQISAASQASAPILG-APKRRPQSQERWPV---QAAAEAR 213
P G P P +S A Q P +G P R P+ + P E
Sbjct: 630 PRVSFPKTPEVGPG---PPPGPLSKAPQPVPPGVGELPARGPRLFDFPPTPLEDQFEEPA 686
Query: 214 EQEAAPGGAGGL--AAGKASGADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQAT 271
E + P G + ++ +E + +AG A Q PL A +Q+
Sbjct: 687 EFKILPDGLANIMKMLDESIRKEEEQQQHEAGVA-----------PQPPLKEPFASLQSP 735
Query: 272 GPEAGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVKPI-----KAKPQYKPP 326
P A A+ + +++ E + + P P+ ++PQ PP
Sbjct: 736 FPTDTAPTTTAPAVAVTTTTTTTTTTTATQEEEKKPPPALPPPPPLAKFPPPSQPQPPPP 795
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 50.4 bits (119), Expect = 3e-06
Identities = 104/434 (23%), Positives = 161/434 (37%), Gaps = 48/434 (11%)
Query: 22 ADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVAR 81
A + V TK S A + AP + Q + PP+ RA E + E + +
Sbjct: 221 AQVKASSVSTKESPARKAAPAPGKVGDVTPQVKGGALPPAKRAKKPEEESESSEEGSESE 280
Query: 82 ATGPAPGPTGER--------EPAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRP 133
PA + + A+ P + PG G + + G A +V Q K +P
Sbjct: 281 EEAPAGTRSQVKASEKILQVRAASAPAKGTPGKG-ATPAPPGKAGAVASQT----KAGKP 335
Query: 134 EPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQISAASQAS--APIL 191
E SE + SD+ E ET K L + K Q+ AAS + +P
Sbjct: 336 EEDSESSSE-ESSDS--EEETPAAKAL----LQAKAS----GKTSQVGAASAPAKESPRK 384
Query: 192 GAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRRK-AGPAWIVRR 250
GA P +A A RE+++ ++ ++ +E + K +G A VR
Sbjct: 385 GAAPAPPGKTGPAVAKAQAGKREEDSQS------SSEESDSEEEAPAQAKPSGKAPQVRA 438
Query: 251 AEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTD 310
A E AA A + TGP AA + +Q + +S+ S E A +
Sbjct: 439 ASAPAKESPRKGAAPAPPRKTGP-----AAAQVQVGKQEEDSRSSSEESDSDREALAAMN 493
Query: 311 IKPVKPIKAKPQYKPPDDKMVHETSYSA-QFKGEASKPTTADNKVIDRRRIRSLYSEPFK 369
VKP+ PQ KP + A P T +V SE
Sbjct: 494 AAQVKPLGKSPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVGKWEEDSESSSEESS 553
Query: 370 EPPKVEKPSVQSSKPKKTSAS---HKPTRK-AKDKQAVSGQAAKKKSAEGPSTTKPDDKE 425
+ E P+ + +K+ + KPT AK +G A + AE KP D
Sbjct: 554 DSSDGEVPTAVAPAQEKSLGNILQAKPTSSPAKGPPQKAGPVAVQVKAE-----KPMDNS 608
Query: 426 QSKEMNNKLAEAKE 439
+S E ++ A+++E
Sbjct: 609 ESSEESSDSADSEE 622
Score = 41.6 bits (96), Expect = 0.001
Identities = 76/380 (20%), Positives = 123/380 (32%), Gaps = 99/380 (26%)
Query: 52 QAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSG 111
+ +P++ P +A ++ T+ ++ AR PAPG G+ P G P
Sbjct: 213 EGKPSVKPAQVKASSVSTK------ESPARKAAPAPGKVGDVTPQVKGGALPPAK----- 261
Query: 112 STSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDH 171
RA K + S SE + +AP +Q +
Sbjct: 262 --------------RAKKPEEESESSEEGSESE-EEAPAGTRSQVKAS------------ 294
Query: 172 PWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKAS 231
K +Q+ AAS AP G P + A PG AG +A+ +
Sbjct: 295 ---EKILQVRAAS---APAKGTPGKGATP----------------APPGKAGAVASQTKA 332
Query: 232 GADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIRE 291
G E D+ + E+TP A Q +A+G + G A+A A +E
Sbjct: 333 GKPEEDSESSS-------EESSDSEEETPAAKALLQAKASGKTSQVGAASAPA-----KE 380
Query: 292 EVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTAD 351
+ P P K P E S S+ + ++ + A
Sbjct: 381 SPRKGAA--------------PAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQ 426
Query: 352 NKVIDRRRIRSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKK 411
K P + P+V S + + + A+ P RK A +++
Sbjct: 427 AK-------------PSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEE 473
Query: 412 SAEGPSTTKPDDKEQSKEMN 431
+ S D+E MN
Sbjct: 474 DSRSSSEESDSDREALAAMN 493
Score = 38.1 bits (87), Expect = 0.016
Identities = 91/422 (21%), Positives = 145/422 (34%), Gaps = 59/422 (13%)
Query: 41 GAPPQPPPPQQQAQPALA-----PPSARAVAIETQPAQGELD-AVARATGPAPGPTGERE 94
GA P PP A P+ S + + + GE+ AVA A + G + +
Sbjct: 520 GAGPVPPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAK 579
Query: 95 PAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSD-APFERE 153
P + P + P +GP A +V+ +P S + SD A E
Sbjct: 580 PTSSPAKGPP-------QKAGPV---------AVQVKAEKPMDNSESSEESSDSADSEEA 623
Query: 154 TQYQKDFRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAR 213
+A P + PK +A+++ AP R R A + A
Sbjct: 624 PAAMTAAQAKPALKIPQTKACPKKTNTTASAKV------APVRVGTQAPRKAGTATSPAG 677
Query: 214 EQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGH----EQTPLPAAQAQVQ 269
A GG A +S + K G A V +A+ +G + +P + Q
Sbjct: 678 SSPAVAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAKSVGKGLQVKAASVPVKGSLGQ 737
Query: 270 ATGPE-AGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDD 328
T P G+ + + +E+ S+ S E A P + K K
Sbjct: 738 GTAPVLPGKTGPTVTQVKAEKQEDSESSEEESDSEEAAA-------SPAQVKTSVKKTQA 790
Query: 329 KMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYSEPFKEPPKVEKP----------- 377
K + + KG S P KV+ ++ P K P V P
Sbjct: 791 KANPAAARAPSAKGTISAP----GKVV-TAAAQAKQRSPSKVKPPVRNPQNSTVLARGPA 845
Query: 378 SVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTKPDDKEQSKEMNNKLAEA 437
SV S +A+ T +D + ++ ++ AE + KP K + ++ LA A
Sbjct: 846 SVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEEAETLAQVKPSGK--THQIRAALAPA 903
Query: 438 KE 439
KE
Sbjct: 904 KE 905
Score = 38.1 bits (87), Expect = 0.016
Identities = 57/255 (22%), Positives = 90/255 (35%), Gaps = 52/255 (20%)
Query: 214 EQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQT-------------- 259
+QEA P A G+ + K G ++ P + +G G+ Q
Sbjct: 1207 KQEAKPQQAAGMLSPKTGG---KEAASGTTPQKSRKPKKGAGNPQASTLALQSNITQCLL 1263
Query: 260 --PLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPV--- 314
P P +AQVQA+ L + +E V ++ + + W K
Sbjct: 1264 GQPWPLNEAQVQAS---------VVKVLTELLEQERKKVVDTTKESSRKGWESRKRKLSG 1314
Query: 315 -KPIKAKPQYKPPD--------DKMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYS 365
+P P+ K + V S KG+A K A V +++ SL S
Sbjct: 1315 DQPAARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKA-KRDKASGDVKEKKGKGSLGS 1373
Query: 366 EPFKEPPKVEKPSVQS-------SKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPST 418
+ K+ P+ E S PK K ++ KDK+ + KKK A+ ST
Sbjct: 1374 QGAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKE----KKEKKKKAKKAST 1429
Query: 419 TKPDDKEQSKEMNNK 433
+ Q K+ K
Sbjct: 1430 KDSESPSQKKKKKKK 1444
Score = 34.7 bits (78), Expect = 0.18
Identities = 89/425 (20%), Positives = 143/425 (33%), Gaps = 89/425 (20%)
Query: 41 GAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPG 100
G P + + + A A+ A G+ V A+ PA + A PG
Sbjct: 333 GKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAPPG 392
Query: 101 RSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDF 160
++GP +A +R E S +S + SD+ E Q +
Sbjct: 393 KTGPAVA------------------KAQAGKREEDS---QSSSEESDSEEEAPAQAKPSG 431
Query: 161 RAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPG 220
+A V+ ++A +P GA P ++ P A + +QE
Sbjct: 432 KA-------------PQVRAASAPAKESPRKGAAPAPP--RKTGPAAAQVQVGKQE---- 472
Query: 221 GAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAG---- 276
S ++E D+ R+A A + + LG PA+ + G AG
Sbjct: 473 ------EDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAGPVPP 526
Query: 277 ---------------------RGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVK 315
++D+ + ++ VA A S N +A P K
Sbjct: 527 GKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPTSSPAK 586
Query: 316 --PIKAKP------QYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYSEP 367
P KA P KP D+ E S + EA TA + +I + P
Sbjct: 587 GPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSEEAPAAMTA-AQAKPALKIPQTKACP 645
Query: 368 FK----EPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTKPDD 423
K KV V + P+K + P A AV+G ++ AE S+++ D
Sbjct: 646 KKTNTTASAKVAPVRVGTQAPRKAGTATSP---AGSSPAVAG--GTQRPAEDSSSSEESD 700
Query: 424 KEQSK 428
E+ K
Sbjct: 701 SEEEK 705
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 50.4 bits (119), Expect = 3e-06
Identities = 104/434 (23%), Positives = 161/434 (37%), Gaps = 48/434 (11%)
Query: 22 ADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVAR 81
A + V TK S A + AP + Q + PP+ RA E + E + +
Sbjct: 221 AQVKASSVSTKESPARKAAPAPGKVGDVTPQVKGGALPPAKRAKKPEEESESSEEGSESE 280
Query: 82 ATGPAPGPTGER--------EPAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRP 133
PA + + A+ P + PG G + + G A +V Q K +P
Sbjct: 281 EEAPAGTRSQVKASEKILQVRAASAPAKGTPGKG-ATPAPPGKAGAVASQT----KAGKP 335
Query: 134 EPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQISAASQAS--APIL 191
E SE + SD+ E ET K L + K Q+ AAS + +P
Sbjct: 336 EEDSESSSE-ESSDS--EEETPAAKAL----LQAKAS----GKTSQVGAASAPAKESPRK 384
Query: 192 GAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRRK-AGPAWIVRR 250
GA P +A A RE+++ ++ ++ +E + K +G A VR
Sbjct: 385 GAAPAPPGKTGPAVAKAQAGKREEDSQS------SSEESDSEEEAPAQAKPSGKAPQVRA 438
Query: 251 AEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTD 310
A E AA A + TGP AA + +Q + +S+ S E A +
Sbjct: 439 ASAPAKESPRKGAAPAPPRKTGP-----AAAQVQVGKQEEDSRSSSEESDSDREALAAMN 493
Query: 311 IKPVKPIKAKPQYKPPDDKMVHETSYSA-QFKGEASKPTTADNKVIDRRRIRSLYSEPFK 369
VKP+ PQ KP + A P T +V SE
Sbjct: 494 AAQVKPLGKSPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVGKWEEDSESSSEESS 553
Query: 370 EPPKVEKPSVQSSKPKKTSAS---HKPTRK-AKDKQAVSGQAAKKKSAEGPSTTKPDDKE 425
+ E P+ + +K+ + KPT AK +G A + AE KP D
Sbjct: 554 DSSDGEVPTAVAPAQEKSLGNILQAKPTSSPAKGPPQKAGPVAVQVKAE-----KPMDNS 608
Query: 426 QSKEMNNKLAEAKE 439
+S E ++ A+++E
Sbjct: 609 ESSEESSDSADSEE 622
Score = 41.6 bits (96), Expect = 0.001
Identities = 76/380 (20%), Positives = 123/380 (32%), Gaps = 99/380 (26%)
Query: 52 QAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSG 111
+ +P++ P +A ++ T+ ++ AR PAPG G+ P G P
Sbjct: 213 EGKPSVKPAQVKASSVSTK------ESPARKAAPAPGKVGDVTPQVKGGALPPAK----- 261
Query: 112 STSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDH 171
RA K + S SE + +AP +Q +
Sbjct: 262 --------------RAKKPEEESESSEEGSESE-EEAPAGTRSQVKAS------------ 294
Query: 172 PWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKAS 231
K +Q+ AAS AP G P + A PG AG +A+ +
Sbjct: 295 ---EKILQVRAAS---APAKGTPGKGATP----------------APPGKAGAVASQTKA 332
Query: 232 GADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIRE 291
G E D+ + E+TP A Q +A+G + G A+A A +E
Sbjct: 333 GKPEEDSESSS-------EESSDSEEETPAAKALLQAKASGKTSQVGAASAPA-----KE 380
Query: 292 EVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTAD 351
+ P P K P E S S+ + ++ + A
Sbjct: 381 SPRKGAA--------------PAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQ 426
Query: 352 NKVIDRRRIRSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKK 411
K P + P+V S + + + A+ P RK A +++
Sbjct: 427 AK-------------PSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEE 473
Query: 412 SAEGPSTTKPDDKEQSKEMN 431
+ S D+E MN
Sbjct: 474 DSRSSSEESDSDREALAAMN 493
Score = 38.9 bits (89), Expect = 0.009
Identities = 102/457 (22%), Positives = 154/457 (33%), Gaps = 99/457 (21%)
Query: 25 AVPLVFTKYSEATEHPGAPPQPPPPQQQAQ---PALAPPSARAVAIET----QPAQGELD 77
A+ ++ K SEA + P A QP A PA +P S A T +P E+
Sbjct: 1076 ALKVLAQKASEA-QPPVARTQPSSGVDSAVGTLPATSPQSTSVQAKGTNKLRKPKLPEVQ 1134
Query: 78 AVARATGPAPGPTGEREPAAGPGRSGPGP-GLGSGSTSGPADSVMRQDYRAWKVQRPEPS 136
+A + + ++G G GP G S T GP S
Sbjct: 1135 QATKAPESSDDSEDSSDSSSGSEEDGEGPQGAKSAHTLGPTPS----------------- 1177
Query: 137 CRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKR 196
R+E + E + D A P + P A SQAS K
Sbjct: 1178 ---RTETLVEETAAESS---EDDVVA---PSQSLLSGYMTPGLTPANSQAS-------KA 1221
Query: 197 RPQSQERWPVQAAAEARE-----QEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRA 251
P+ V + A++ QEA P A G+ + K G ++ P +
Sbjct: 1222 TPKLDSSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGG---KEAASGTTPQKSRKPK 1278
Query: 252 EGLGHEQT----------------PLPAAQAQVQATGPEAGRGRAAADALNRQIREEVAS 295
+G G+ Q P P +AQVQA+ L + +E
Sbjct: 1279 KGAGNPQASTLALQSNITQCLLGQPWPLNEAQVQAS---------VVKVLTELLEQERKK 1329
Query: 296 AVSSSYRNEFRAWTDIKPV----KPIKAKPQYKPPD--------DKMVHETSYSAQFKGE 343
V ++ + + W K +P P+ K + V S KG+
Sbjct: 1330 VVDTTKESSRKGWESRKRKLSGDQPAARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGK 1389
Query: 344 ASKPTTADNKVIDRRRIRSLYSEPFKEPPKVEKPSVQS-------SKPKKTSASHKPTRK 396
A K A V +++ SL S+ K+ P+ E S PK K ++
Sbjct: 1390 A-KRDKASGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKR 1448
Query: 397 AKDKQAVSGQAAKKKSAEGPSTTKPDDKEQSKEMNNK 433
KDK+ + KKK A+ ST + Q K+ K
Sbjct: 1449 KKDKE----KKEKKKKAKKASTKDSESPSQKKKKKKK 1481
Score = 38.1 bits (87), Expect = 0.016
Identities = 91/422 (21%), Positives = 145/422 (34%), Gaps = 59/422 (13%)
Query: 41 GAPPQPPPPQQQAQPALA-----PPSARAVAIETQPAQGELD-AVARATGPAPGPTGERE 94
GA P PP A P+ S + + + GE+ AVA A + G + +
Sbjct: 520 GAGPVPPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAK 579
Query: 95 PAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSD-APFERE 153
P + P + P +GP A +V+ +P S + SD A E
Sbjct: 580 PTSSPAKGPP-------QKAGPV---------AVQVKAEKPMDNSESSEESSDSADSEEA 623
Query: 154 TQYQKDFRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAR 213
+A P + PK +A+++ AP R R A + A
Sbjct: 624 PAAMTAAQAKPALKIPQTKACPKKTNTTASAKV------APVRVGTQAPRKAGTATSPAG 677
Query: 214 EQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGH----EQTPLPAAQAQVQ 269
A GG A +S + K G A V +A+ +G + +P + Q
Sbjct: 678 SSPAVAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAKSVGKGLQVKAASVPVKGSLGQ 737
Query: 270 ATGPE-AGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDD 328
T P G+ + + +E+ S+ S E A P + K K
Sbjct: 738 GTAPVLPGKTGPTVTQVKAEKQEDSESSEEESDSEEAAA-------SPAQVKTSVKKTQA 790
Query: 329 KMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYSEPFKEPPKVEKP----------- 377
K + + KG S P KV+ ++ P K P V P
Sbjct: 791 KANPAAARAPSAKGTISAP----GKVV-TAAAQAKQRSPSKVKPPVRNPQNSTVLARGPA 845
Query: 378 SVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTKPDDKEQSKEMNNKLAEA 437
SV S +A+ T +D + ++ ++ AE + KP K + ++ LA A
Sbjct: 846 SVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEEAETLAQVKPSGK--THQIRAALAPA 903
Query: 438 KE 439
KE
Sbjct: 904 KE 905
Score = 34.7 bits (78), Expect = 0.18
Identities = 89/425 (20%), Positives = 143/425 (33%), Gaps = 89/425 (20%)
Query: 41 GAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPG 100
G P + + + A A+ A G+ V A+ PA + A PG
Sbjct: 333 GKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAPPG 392
Query: 101 RSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDF 160
++GP +A +R E S +S + SD+ E Q +
Sbjct: 393 KTGPAVA------------------KAQAGKREEDS---QSSSEESDSEEEAPAQAKPSG 431
Query: 161 RAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPG 220
+A V+ ++A +P GA P ++ P A + +QE
Sbjct: 432 KA-------------PQVRAASAPAKESPRKGAAPAPP--RKTGPAAAQVQVGKQE---- 472
Query: 221 GAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAG---- 276
S ++E D+ R+A A + + LG PA+ + G AG
Sbjct: 473 ------EDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAGPVPP 526
Query: 277 ---------------------RGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVK 315
++D+ + ++ VA A S N +A P K
Sbjct: 527 GKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPTSSPAK 586
Query: 316 --PIKAKP------QYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYSEP 367
P KA P KP D+ E S + EA TA + +I + P
Sbjct: 587 GPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSEEAPAAMTA-AQAKPALKIPQTKACP 645
Query: 368 FK----EPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTKPDD 423
K KV V + P+K + P A AV+G ++ AE S+++ D
Sbjct: 646 KKTNTTASAKVAPVRVGTQAPRKAGTATSP---AGSSPAVAG--GTQRPAEDSSSSEESD 700
Query: 424 KEQSK 428
E+ K
Sbjct: 701 SEEEK 705
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 50.4 bits (119), Expect = 3e-06
Identities = 104/434 (23%), Positives = 161/434 (37%), Gaps = 48/434 (11%)
Query: 22 ADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVAR 81
A + V TK S A + AP + Q + PP+ RA E + E + +
Sbjct: 221 AQVKASSVSTKESPARKAAPAPGKVGDVTPQVKGGALPPAKRAKKPEEESESSEEGSESE 280
Query: 82 ATGPAPGPTGER--------EPAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRP 133
PA + + A+ P + PG G + + G A +V Q K +P
Sbjct: 281 EEAPAGTRSQVKASEKILQVRAASAPAKGTPGKG-ATPAPPGKAGAVASQT----KAGKP 335
Query: 134 EPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQISAASQAS--APIL 191
E SE + SD+ E ET K L + K Q+ AAS + +P
Sbjct: 336 EEDSESSSE-ESSDS--EEETPAAKAL----LQAKAS----GKTSQVGAASAPAKESPRK 384
Query: 192 GAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRRK-AGPAWIVRR 250
GA P +A A RE+++ ++ ++ +E + K +G A VR
Sbjct: 385 GAAPAPPGKTGPAVAKAQAGKREEDSQS------SSEESDSEEEAPAQAKPSGKAPQVRA 438
Query: 251 AEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTD 310
A E AA A + TGP AA + +Q + +S+ S E A +
Sbjct: 439 ASAPAKESPRKGAAPAPPRKTGP-----AAAQVQVGKQEEDSRSSSEESDSDREALAAMN 493
Query: 311 IKPVKPIKAKPQYKPPDDKMVHETSYSA-QFKGEASKPTTADNKVIDRRRIRSLYSEPFK 369
VKP+ PQ KP + A P T +V SE
Sbjct: 494 AAQVKPLGKSPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVGKWEEDSESSSEESS 553
Query: 370 EPPKVEKPSVQSSKPKKTSAS---HKPTRK-AKDKQAVSGQAAKKKSAEGPSTTKPDDKE 425
+ E P+ + +K+ + KPT AK +G A + AE KP D
Sbjct: 554 DSSDGEVPTAVAPAQEKSLGNILQAKPTSSPAKGPPQKAGPVAVQVKAE-----KPMDNS 608
Query: 426 QSKEMNNKLAEAKE 439
+S E ++ A+++E
Sbjct: 609 ESSEESSDSADSEE 622
Score = 41.6 bits (96), Expect = 0.001
Identities = 76/380 (20%), Positives = 123/380 (32%), Gaps = 99/380 (26%)
Query: 52 QAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSG 111
+ +P++ P +A ++ T+ ++ AR PAPG G+ P G P
Sbjct: 213 EGKPSVKPAQVKASSVSTK------ESPARKAAPAPGKVGDVTPQVKGGALPPAK----- 261
Query: 112 STSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDH 171
RA K + S SE + +AP +Q +
Sbjct: 262 --------------RAKKPEEESESSEEGSESE-EEAPAGTRSQVKAS------------ 294
Query: 172 PWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKAS 231
K +Q+ AAS AP G P + A PG AG +A+ +
Sbjct: 295 ---EKILQVRAAS---APAKGTPGKGATP----------------APPGKAGAVASQTKA 332
Query: 232 GADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIRE 291
G E D+ + E+TP A Q +A+G + G A+A A +E
Sbjct: 333 GKPEEDSESSS-------EESSDSEEETPAAKALLQAKASGKTSQVGAASAPA-----KE 380
Query: 292 EVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTAD 351
+ P P K P E S S+ + ++ + A
Sbjct: 381 SPRKGAA--------------PAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQ 426
Query: 352 NKVIDRRRIRSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKK 411
K P + P+V S + + + A+ P RK A +++
Sbjct: 427 AK-------------PSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEE 473
Query: 412 SAEGPSTTKPDDKEQSKEMN 431
+ S D+E MN
Sbjct: 474 DSRSSSEESDSDREALAAMN 493
Score = 38.1 bits (87), Expect = 0.016
Identities = 91/422 (21%), Positives = 145/422 (34%), Gaps = 59/422 (13%)
Query: 41 GAPPQPPPPQQQAQPALA-----PPSARAVAIETQPAQGELD-AVARATGPAPGPTGERE 94
GA P PP A P+ S + + + GE+ AVA A + G + +
Sbjct: 520 GAGPVPPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAK 579
Query: 95 PAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSD-APFERE 153
P + P + P +GP A +V+ +P S + SD A E
Sbjct: 580 PTSSPAKGPP-------QKAGPV---------AVQVKAEKPMDNSESSEESSDSADSEEA 623
Query: 154 TQYQKDFRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAR 213
+A P + PK +A+++ AP R R A + A
Sbjct: 624 PAAMTAAQAKPALKIPQTKACPKKTNTTASAKV------APVRVGTQAPRKAGTATSPAG 677
Query: 214 EQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGH----EQTPLPAAQAQVQ 269
A GG A +S + K G A V +A+ +G + +P + Q
Sbjct: 678 SSPAVAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAKSVGKGLQVKAASVPVKGSLGQ 737
Query: 270 ATGPE-AGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDD 328
T P G+ + + +E+ S+ S E A P + K K
Sbjct: 738 GTAPVLPGKTGPTVTQVKAEKQEDSESSEEESDSEEAAA-------SPAQVKTSVKKTQA 790
Query: 329 KMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYSEPFKEPPKVEKP----------- 377
K + + KG S P KV+ ++ P K P V P
Sbjct: 791 KANPAAARAPSAKGTISAP----GKVV-TAAAQAKQRSPSKVKPPVRNPQNSTVLARGPA 845
Query: 378 SVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTKPDDKEQSKEMNNKLAEA 437
SV S +A+ T +D + ++ ++ AE + KP K + ++ LA A
Sbjct: 846 SVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEEAETLAQVKPSGK--THQIRAALAPA 903
Query: 438 KE 439
KE
Sbjct: 904 KE 905
Score = 38.1 bits (87), Expect = 0.016
Identities = 57/255 (22%), Positives = 90/255 (35%), Gaps = 52/255 (20%)
Query: 214 EQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQT-------------- 259
+QEA P A G+ + K G ++ P + +G G+ Q
Sbjct: 1206 KQEAKPQQAAGMLSPKTGG---KEAASGTTPQKSRKPKKGAGNPQASTLALQSNITQCLL 1262
Query: 260 --PLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPV--- 314
P P +AQVQA+ L + +E V ++ + + W K
Sbjct: 1263 GQPWPLNEAQVQAS---------VVKVLTELLEQERKKVVDTTKESSRKGWESRKRKLSG 1313
Query: 315 -KPIKAKPQYKPPD--------DKMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYS 365
+P P+ K + V S KG+A K A V +++ SL S
Sbjct: 1314 DQPAARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKA-KRDKASGDVKEKKGKGSLGS 1372
Query: 366 EPFKEPPKVEKPSVQS-------SKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPST 418
+ K+ P+ E S PK K ++ KDK+ + KKK A+ ST
Sbjct: 1373 QGAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKE----KKEKKKKAKKAST 1428
Query: 419 TKPDDKEQSKEMNNK 433
+ Q K+ K
Sbjct: 1429 KDSESPSQKKKKKKK 1443
Score = 34.7 bits (78), Expect = 0.18
Identities = 89/425 (20%), Positives = 143/425 (33%), Gaps = 89/425 (20%)
Query: 41 GAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPG 100
G P + + + A A+ A G+ V A+ PA + A PG
Sbjct: 333 GKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAPPG 392
Query: 101 RSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDF 160
++GP +A +R E S +S + SD+ E Q +
Sbjct: 393 KTGPAVA------------------KAQAGKREEDS---QSSSEESDSEEEAPAQAKPSG 431
Query: 161 RAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPG 220
+A V+ ++A +P GA P ++ P A + +QE
Sbjct: 432 KA-------------PQVRAASAPAKESPRKGAAPAPP--RKTGPAAAQVQVGKQE---- 472
Query: 221 GAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAG---- 276
S ++E D+ R+A A + + LG PA+ + G AG
Sbjct: 473 ------EDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAGPVPP 526
Query: 277 ---------------------RGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVK 315
++D+ + ++ VA A S N +A P K
Sbjct: 527 GKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPTSSPAK 586
Query: 316 --PIKAKP------QYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYSEP 367
P KA P KP D+ E S + EA TA + +I + P
Sbjct: 587 GPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSEEAPAAMTA-AQAKPALKIPQTKACP 645
Query: 368 FK----EPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTKPDD 423
K KV V + P+K + P A AV+G ++ AE S+++ D
Sbjct: 646 KKTNTTASAKVAPVRVGTQAPRKAGTATSP---AGSSPAVAG--GTQRPAEDSSSSEESD 700
Query: 424 KEQSK 428
E+ K
Sbjct: 701 SEEEK 705
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 50.4 bits (119), Expect = 3e-06
Identities = 104/434 (23%), Positives = 161/434 (37%), Gaps = 48/434 (11%)
Query: 22 ADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVAR 81
A + V TK S A + AP + Q + PP+ RA E + E + +
Sbjct: 221 AQVKASSVSTKESPARKAAPAPGKVGDVTPQVKGGALPPAKRAKKPEEESESSEEGSESE 280
Query: 82 ATGPAPGPTGER--------EPAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRP 133
PA + + A+ P + PG G + + G A +V Q K +P
Sbjct: 281 EEAPAGTRSQVKASEKILQVRAASAPAKGTPGKG-ATPAPPGKAGAVASQT----KAGKP 335
Query: 134 EPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQISAASQAS--APIL 191
E SE + SD+ E ET K L + K Q+ AAS + +P
Sbjct: 336 EEDSESSSE-ESSDS--EEETPAAKAL----LQAKAS----GKTSQVGAASAPAKESPRK 384
Query: 192 GAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRRK-AGPAWIVRR 250
GA P +A A RE+++ ++ ++ +E + K +G A VR
Sbjct: 385 GAAPAPPGKTGPAVAKAQAGKREEDSQS------SSEESDSEEEAPAQAKPSGKAPQVRA 438
Query: 251 AEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTD 310
A E AA A + TGP AA + +Q + +S+ S E A +
Sbjct: 439 ASAPAKESPRKGAAPAPPRKTGP-----AAAQVQVGKQEEDSRSSSEESDSDREALAAMN 493
Query: 311 IKPVKPIKAKPQYKPPDDKMVHETSYSA-QFKGEASKPTTADNKVIDRRRIRSLYSEPFK 369
VKP+ PQ KP + A P T +V SE
Sbjct: 494 AAQVKPLGKSPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVGKWEEDSESSSEESS 553
Query: 370 EPPKVEKPSVQSSKPKKTSAS---HKPTRK-AKDKQAVSGQAAKKKSAEGPSTTKPDDKE 425
+ E P+ + +K+ + KPT AK +G A + AE KP D
Sbjct: 554 DSSDGEVPTAVAPAQEKSLGNILQAKPTSSPAKGPPQKAGPVAVQVKAE-----KPMDNS 608
Query: 426 QSKEMNNKLAEAKE 439
+S E ++ A+++E
Sbjct: 609 ESSEESSDSADSEE 622
Score = 41.6 bits (96), Expect = 0.001
Identities = 76/380 (20%), Positives = 123/380 (32%), Gaps = 99/380 (26%)
Query: 52 QAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSG 111
+ +P++ P +A ++ T+ ++ AR PAPG G+ P G P
Sbjct: 213 EGKPSVKPAQVKASSVSTK------ESPARKAAPAPGKVGDVTPQVKGGALPPAK----- 261
Query: 112 STSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDH 171
RA K + S SE + +AP +Q +
Sbjct: 262 --------------RAKKPEEESESSEEGSESE-EEAPAGTRSQVKAS------------ 294
Query: 172 PWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKAS 231
K +Q+ AAS AP G P + A PG AG +A+ +
Sbjct: 295 ---EKILQVRAAS---APAKGTPGKGATP----------------APPGKAGAVASQTKA 332
Query: 232 GADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIRE 291
G E D+ + E+TP A Q +A+G + G A+A A +E
Sbjct: 333 GKPEEDSESSS-------EESSDSEEETPAAKALLQAKASGKTSQVGAASAPA-----KE 380
Query: 292 EVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTAD 351
+ P P K P E S S+ + ++ + A
Sbjct: 381 SPRKGAA--------------PAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQ 426
Query: 352 NKVIDRRRIRSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKK 411
K P + P+V S + + + A+ P RK A +++
Sbjct: 427 AK-------------PSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEE 473
Query: 412 SAEGPSTTKPDDKEQSKEMN 431
+ S D+E MN
Sbjct: 474 DSRSSSEESDSDREALAAMN 493
Score = 38.1 bits (87), Expect = 0.016
Identities = 91/422 (21%), Positives = 145/422 (34%), Gaps = 59/422 (13%)
Query: 41 GAPPQPPPPQQQAQPALA-----PPSARAVAIETQPAQGELD-AVARATGPAPGPTGERE 94
GA P PP A P+ S + + + GE+ AVA A + G + +
Sbjct: 520 GAGPVPPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAK 579
Query: 95 PAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSD-APFERE 153
P + P + P +GP A +V+ +P S + SD A E
Sbjct: 580 PTSSPAKGPP-------QKAGPV---------AVQVKAEKPMDNSESSEESSDSADSEEA 623
Query: 154 TQYQKDFRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAR 213
+A P + PK +A+++ AP R R A + A
Sbjct: 624 PAAMTAAQAKPALKIPQTKACPKKTNTTASAKV------APVRVGTQAPRKAGTATSPAG 677
Query: 214 EQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGH----EQTPLPAAQAQVQ 269
A GG A +S + K G A V +A+ +G + +P + Q
Sbjct: 678 SSPAVAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAKSVGKGLQVKAASVPVKGSLGQ 737
Query: 270 ATGPE-AGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDD 328
T P G+ + + +E+ S+ S E A P + K K
Sbjct: 738 GTAPVLPGKTGPTVTQVKAEKQEDSESSEEESDSEEAAA-------SPAQVKTSVKKTQA 790
Query: 329 KMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYSEPFKEPPKVEKP----------- 377
K + + KG S P KV+ ++ P K P V P
Sbjct: 791 KANPAAARAPSAKGTISAP----GKVV-TAAAQAKQRSPSKVKPPVRNPQNSTVLARGPA 845
Query: 378 SVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTKPDDKEQSKEMNNKLAEA 437
SV S +A+ T +D + ++ ++ AE + KP K + ++ LA A
Sbjct: 846 SVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEEAETLAQVKPSGK--THQIRAALAPA 903
Query: 438 KE 439
KE
Sbjct: 904 KE 905
Score = 34.7 bits (78), Expect = 0.18
Identities = 89/425 (20%), Positives = 143/425 (33%), Gaps = 89/425 (20%)
Query: 41 GAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPG 100
G P + + + A A+ A G+ V A+ PA + A PG
Sbjct: 333 GKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAPPG 392
Query: 101 RSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDF 160
++GP +A +R E S +S + SD+ E Q +
Sbjct: 393 KTGPAVA------------------KAQAGKREEDS---QSSSEESDSEEEAPAQAKPSG 431
Query: 161 RAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPG 220
+A V+ ++A +P GA P ++ P A + +QE
Sbjct: 432 KA-------------PQVRAASAPAKESPRKGAAPAPP--RKTGPAAAQVQVGKQE---- 472
Query: 221 GAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAG---- 276
S ++E D+ R+A A + + LG PA+ + G AG
Sbjct: 473 ------EDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAGPVPP 526
Query: 277 ---------------------RGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVK 315
++D+ + ++ VA A S N +A P K
Sbjct: 527 GKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPTSSPAK 586
Query: 316 --PIKAKP------QYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYSEP 367
P KA P KP D+ E S + EA TA + +I + P
Sbjct: 587 GPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSEEAPAAMTA-AQAKPALKIPQTKACP 645
Query: 368 FK----EPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTKPDD 423
K KV V + P+K + P A AV+G ++ AE S+++ D
Sbjct: 646 KKTNTTASAKVAPVRVGTQAPRKAGTATSP---AGSSPAVAG--GTQRPAEDSSSSEESD 700
Query: 424 KEQSK 428
E+ K
Sbjct: 701 SEEEK 705
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 50.1 bits (118), Expect = 4e-06
Identities = 100/457 (21%), Positives = 169/457 (36%), Gaps = 64/457 (14%)
Query: 34 SEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGER 93
S A E +PP+ P+++ A +P ++ PA+ E + A A P + +
Sbjct: 552 SPAKEEAKSPPEAKSPEKEE--AKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVK 609
Query: 94 EPAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSD----AP 149
E A P + + S + + + + PE + P E S +P
Sbjct: 610 EEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKSP 669
Query: 150 FERETQYQKDFRAWPLPRRGDHPWIPK-PVQISAASQASAPILGAPKRRPQSQERWPVQA 208
+ E + + ++ P+ P K PV+ A S A + + + + PV+
Sbjct: 670 VKAEAKSPEKAKS-PVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKE 728
Query: 209 AAEAREQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQTPLPA----- 263
A+ E+ +P + KA ++ T P A+ E+ PA
Sbjct: 729 EAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSP-----EAKTPAKEEARSPADKFPE 783
Query: 264 ---AQAQVQATGPEAGRGRAAADAL--NRQI--REEVASAVSSSYRNEFRAWTDIKPVKP 316
+ + + PE + DA ++I +EEV S V + + ++K +P
Sbjct: 784 KAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQ-----EVKVKEP 838
Query: 317 IKAKPQYKPPDDKMVHETSYSAQF---KGEASKPTTADNKVIDRRRIRSLYSEPFKEP-- 371
K + K P E S + K EA KP + K + + E KE
Sbjct: 839 PKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAE 898
Query: 372 -------PKVEKPSV----QSSKPK-KTSASHK---------PTRKAKDKQAV-----SG 405
P+ E P+ + +KPK KT + K P++ A+ K+A +
Sbjct: 899 DKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTK 958
Query: 406 QAAKKKSAEGPST---TKPDDKEQSKEMNNKLAEAKE 439
+ KK E P T K DDK SKE + AE E
Sbjct: 959 EEKAKKPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAE 995
Score = 47.8 bits (112), Expect = 2e-05
Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 25/268 (9%)
Query: 177 PVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADER 236
PV+ A S A A + + ++ + P +A + A+E+ +P A + E+
Sbjct: 519 PVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEA---------KSPEK 569
Query: 237 DTRRKAGPAWIVRRAEGLGHEQTPLPA-AQAQVQATGPEAGRGRAAADALNRQIREEVAS 295
+ + +A+ E+ PA A++ +A P ++ A+A ++EE S
Sbjct: 570 EEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEA-KSPVKEEAKS 628
Query: 296 AVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTADNKV- 354
+ ++ T + P KAK P ++ + K EA P A + V
Sbjct: 629 PAEVKSPEKAKSPTKEEAKSPEKAK---SPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVK 685
Query: 355 ---IDRRRIRSLYSEPFKEPPKVEKPSVQSSK-PKKTSASHKPTRKAKDKQAVSGQAAKK 410
+ +S E K P K + P + +K P+K + K K +K ++ K
Sbjct: 686 AEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEK----AKSPVK 741
Query: 411 KSAEGPSTTKPDDKEQSKEMNNKLAEAK 438
+ A+ P K E++K ++ K EAK
Sbjct: 742 EEAKSPEKAK--SPEKAKTLDVKSPEAK 767
Score = 33.9 bits (76), Expect = 0.30
Identities = 83/418 (19%), Positives = 152/418 (36%), Gaps = 78/418 (18%)
Query: 47 PPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGE------------RE 94
P ++ P A +A A + A+ + A A++ A P E +E
Sbjct: 655 PEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKE 714
Query: 95 PAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRA-WKVQRPEPSCRPRSEYQPSDAPFERE 153
A P ++ P T A S ++++ ++ K + PE + + + P + E
Sbjct: 715 EAKSPEKA-KSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEE 773
Query: 154 TQYQKDFRAWPLPRRGDHPW-----IPKPVQISAASQASAPILGAPKRR----PQSQERW 204
+ D P + P P+ + A AP PK+ P +E
Sbjct: 774 ARSPAD----KFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEK 829
Query: 205 P----VQAAAEAREQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQTP 260
P V+ + E+E AP A K +++D++++ P ++ P
Sbjct: 830 PQEVKVKEPPKKAEEEKAP------ATPKTE--EKKDSKKEEAPK-----------KEAP 870
Query: 261 LPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVKPIKAK 320
P + + + + + A + +++V + + + D KP + K +
Sbjct: 871 KPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPA-KVEVKEDAKPKE--KTE 927
Query: 321 PQYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYSEPFKEPPKVEKPSVQ 380
K PDD E S A+ K A P D K ++ +E PK E + +
Sbjct: 928 VAKKEPDDAKAKEPSKPAEKKEAA--PEKKDTKEEKAKKP--------EEKPKTEAKAKE 977
Query: 381 SSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTKPDDKEQSKEMNNKLAEAK 438
K + S +P++ +K A+K S ST + D K K +K A+ K
Sbjct: 978 DDK----TLSKEPSKPKAEK-------AEKSS----STDQKDSKPPEKATEDKAAKGK 1020
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 49.7 bits (117), Expect = 5e-06
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 3/120 (2%)
Query: 41 GAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPG 100
G PP PPPP A P P+ A PA+ E + + A GP P P P GP
Sbjct: 794 GLPPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEELPAAPGPLPPPPPPPPPVPGPV 853
Query: 101 RSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDF 160
P + G+ G + +D + S E + + E E + ++DF
Sbjct: 854 TLPPPQLVPEGTPGGGGPPALEEDLTVINI---NSSDEEEEEEEEEEEEEEEEEEEEEDF 910
Score = 34.7 bits (78), Expect = 0.18
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 19/79 (24%)
Query: 40 PGAPPQPPPPQQQAQPALAP-----------------PSARAVAIETQPAQGEL--DAVA 80
P PP PP+ Q +P P +A +A E P+QGE+ + +
Sbjct: 984 PALPPPESPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAPTLAPEALPSQGEVEREGES 1043
Query: 81 RATGPAPGPTGEREPAAGP 99
A GP P E EP+A P
Sbjct: 1044 PAAGPPPQELVEEEPSAPP 1062
Score = 32.7 bits (73), Expect = 0.67
Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 36 ATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQP--AQGELDAVARATGPAPGPTGER 93
A HP PP P PA PP P G + +V P P+
Sbjct: 629 ALTHPRVPPLQPMGPTCPTPAPVPPPEAPSPFRAPPFHPPGPMPSVGSMPSAGPMPSAGP 688
Query: 94 EPAAGPGRSG-PGP 106
P+AGP S PGP
Sbjct: 689 MPSAGPVPSARPGP 702
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 48.9 bits (115), Expect = 9e-06
Identities = 62/257 (24%), Positives = 85/257 (33%), Gaps = 31/257 (12%)
Query: 34 SEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQG-----ELDAVARATGPAPG 88
S + P PQ PPPQ QP PP + P QG + GP P
Sbjct: 87 SRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP--QGPPPQGGNRPQGPPPPGKPQGPPPQ 144
Query: 89 PTGEREPAAGPGRSGPGPGLGSGSTSGPADSVMRQD----YRAWKVQRPEPSCRPRSEYQ 144
R P + PG+ P G GP + K Q P P +P+
Sbjct: 145 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQG--P 202
Query: 145 PSDAPFERETQYQKDFRAWPLPRRGDHPWIPKP----VQISAASQASAPILGAPKRRPQS 200
P R +Q P P+ G+ P P P Q + P P +PQ
Sbjct: 203 PPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG 262
Query: 201 QERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQTP 260
P Q ++++ + P GK G +++ GP A G +
Sbjct: 263 P---PAQGGSKSQSARSPP--------GKPQGPPQQEGNNPQGPP---PPAGGNPQQPQA 308
Query: 261 LPAAQAQVQATGPEAGR 277
PA Q Q P+ GR
Sbjct: 309 PPAGQPQGPPRPPQGGR 325
Score = 37.7 bits (86), Expect = 0.021
Identities = 43/188 (22%), Positives = 63/188 (33%), Gaps = 22/188 (11%)
Query: 40 PGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGP 99
P PQ PPPQ +P PP + + P QG+ ++ P P + P
Sbjct: 53 PPGKPQGPPPQGGNKPQGPPPPGKP---QGPPPQGD-----KSRSPRSPPGKPQGPPPQG 104
Query: 100 GRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKD 159
G GP G GP + Q P P +P+ P R +
Sbjct: 105 GNQPQGPPPPPGKPQGPPPQ------GGNRPQGPPPPGKPQG--PPPQGDKSRSPRSPPG 156
Query: 160 FRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRR---PQSQERWPVQAAAEAREQE 216
P P+ G+ P P P P G K + P + + P ++R +
Sbjct: 157 KPQGPPPQGGNQPQGPPP---PPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQ 213
Query: 217 AAPGGAGG 224
+ PG G
Sbjct: 214 SPPGKPQG 221
Score = 33.5 bits (75), Expect = 0.39
Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 18/128 (14%)
Query: 34 SEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGER 93
S +++ P PQ PPPQ QP PP + P QG + GP P +
Sbjct: 209 SRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKP--QGPPPQGG----NKPQGPPPPGKPQG 262
Query: 94 EPAAG-----PGRSGPGPGLGSGSTSG-------PADSVMRQDYRAWKVQRPEPSCRPRS 141
PA G RS PG G G P Q +A +P+ RP
Sbjct: 263 PPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQ 322
Query: 142 EYQPSDAP 149
+PS P
Sbjct: 323 GGRPSRPP 330
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 48.5 bits (114), Expect = 1e-05
Identities = 102/442 (23%), Positives = 156/442 (35%), Gaps = 102/442 (23%)
Query: 43 PPQPPPPQQQAQPALAPPSARAVAIETQPAQGEL-DAVARATGPAPGPTGEREPAAGPGR 101
PP+ P P+ R+V E +P L D GPAP P E E G
Sbjct: 413 PPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGA 472
Query: 102 SGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEP-SCRPRSEYQPSDAPFERETQYQKDF 160
+G+ ++ PA S P P SC S+ P
Sbjct: 473 GTEPERIGTEPSTAPAPS------------PPAPKSCLKHRPAAASEGPAASP------- 513
Query: 161 RAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQ--ERWPVQAAAEAREQEAA 218
PL P P P + A +A+AP RP+++ E P A A E++A
Sbjct: 514 ---PLAAAESPPVEPGPGSLDA--EAAAP------ERPKAERAEAPPAGAERAAPERKAE 562
Query: 219 PGGAGGLAAGKASGADERDTRR-----------------KAGPAWIVRRA----EGLGHE 257
GGA A K S + R R ++GP W A +GL
Sbjct: 563 RGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARSGPVWRSEAALDDLQGLPEP 622
Query: 258 QTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASA-------------VSSSYRNE 304
Q P + ++ GP+ RAA+ A R+ +E A+A S RN
Sbjct: 623 QHAKPGPR-KLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEDRNP 681
Query: 305 F---------------RAWTDIKPVKPIKAKPQYK------PPDDKMVHET--------S 335
F A ++K VK A+ + + P ++K T +
Sbjct: 682 FPVKLRSTSLSLKYRDGASQEVKGVKRYSAEVRLERSLTVLPKEEKCPLGTAPALRGTRA 741
Query: 336 YSAQFKGEASKPTTADNK-VIDRRRIRSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPT 394
S Q KG+A P +K + R+ + ++ P + P P + + + +A +P
Sbjct: 742 PSDQGKGKARPPEPLSSKPPLPRKPLLQSFTLPHQPAPPDAGPGEREPRKEPRTAEKRPL 801
Query: 395 RKAKDKQ---AVSGQAAKKKSA 413
R+ +K A +G A + A
Sbjct: 802 RRGAEKSLPPAATGPGADGQPA 823
>gi|30089916 phosphofurin acidic cluster sorting protein 1 [Homo
sapiens]
Length = 963
Score = 47.0 bits (110), Expect = 3e-05
Identities = 32/99 (32%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 42 APPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGR 101
+P QPPP QQQ QP P + Q A A + T A
Sbjct: 28 SPQQPPPQQQQQQPPQQPTPPKL----AQATSSSSSTSAAAASSSSSSTSTSMAVAVASG 83
Query: 102 SGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPR 140
S P G G G T P V Y W+V R SC PR
Sbjct: 84 SAPPGGPGPGRTPAP---VQMNLYATWEVDRSSSSCVPR 119
>gi|4506321 protein tyrosine phosphatase, receptor type, N precursor
[Homo sapiens]
Length = 979
Score = 45.8 bits (107), Expect = 8e-05
Identities = 76/276 (27%), Positives = 104/276 (37%), Gaps = 45/276 (16%)
Query: 38 EHPGAPPQPPPPQQQAQPALAPP--------SARAVAIETQPAQGELDAVARATGPAPGP 89
EH PPQPP P +PAL P + E P + + +A PA
Sbjct: 186 EHLLLPPQPPHPSLSYEPALLQPYLFHQFGSRDGSRVSEGSPGMVSVGPLPKAEAPA--- 242
Query: 90 TGEREPAAGPGRSGPGPGLGSGSTSGPADSVMRQD----YRAWKVQRPEPSCRPRSEYQP 145
A G G PG G GP+ + + QD Y A ++ P + PR Q
Sbjct: 243 --LFSRTASKGIFGDHPGHSYGDLPGPSPAQLFQDSGLLYLAQELPAPSRARVPRLPEQG 300
Query: 146 SDAPFERETQ-YQKDFRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQERW 204
S + E + Y+K+ L RG+ P P VQ AA Q A +L + ++
Sbjct: 301 SSSRAEDSPEGYEKE----GLGDRGEKPASP-AVQPDAALQRLAAVLAG--YGVELRQLT 353
Query: 205 PVQAAAEAREQEAAPGGAGGLAAGKAS-GADERDTRRKAGPAWIVRRAEGLGHEQTPLPA 263
P Q + + P GAG G + GAD + T GP G + LPA
Sbjct: 354 PEQLSTLLTLLQLLPKGAGRNPGGVVNVGADIKKTME--GPV--------EGRDTAELPA 403
Query: 264 AQAQVQATGPEAGRGRAAADALNRQIREEVASAVSS 299
T P G A+ + Q +V S VSS
Sbjct: 404 ------RTSPMPGHPTASPTSSEVQ---QVPSPVSS 430
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 45.8 bits (107), Expect = 8e-05
Identities = 48/163 (29%), Positives = 54/163 (33%), Gaps = 35/163 (21%)
Query: 39 HPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAG 98
HPG P PPP Q + PP R E P QG ++ GP P P P +
Sbjct: 179 HPGKPEGPPP--QGGNQSQGPPP-RPGKPEGPPPQGG----NQSQGPPPRPGKPEGPPSQ 231
Query: 99 PGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQK 158
G GP G GP K QRP P RP+ P P +
Sbjct: 232 GGNKPQGPPPHPGKPQGPPPQ------EGNKPQRPPPPGRPQGPPPPGGNPQQ------- 278
Query: 159 DFRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQ 201
PLP P P P P G P R PQ Q
Sbjct: 279 -----PLPPPAGKPQGPPP----------PPQGGRPHRPPQGQ 306
Score = 39.7 bits (91), Expect = 0.005
Identities = 69/256 (26%), Positives = 83/256 (32%), Gaps = 44/256 (17%)
Query: 41 GAPPQP-----PPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREP 95
G PP+P PPPQ Q PP R E QP QG ++ GP P P P
Sbjct: 70 GPPPRPGKPEGPPPQGGNQSQGPPP--RPGKPEGQPPQGG----NQSQGPPPRPGKPEGP 123
Query: 96 AAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQ 155
G GP G GP Q Q P P RP +P P + Q
Sbjct: 124 PPQGGNQSQGPPPRPGKPEGPPPQGGNQS------QGPPP--RPG---KPEGPPPQGGNQ 172
Query: 156 YQKDFRAWPLPRRGDHPWIPK--PVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAR 213
Q P P HP P+ P Q SQ P G P+ P
Sbjct: 173 SQ-----GPPP----HPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 223
Query: 214 EQEAAPGGAGGLA------AGKASGADERDTRRKAGPAWIVRRAEGL----GHEQTPLPA 263
+ E P G GK G ++ + P R +G G+ Q PLP
Sbjct: 224 KPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPP-PPGRPQGPPPPGGNPQQPLPP 282
Query: 264 AQAQVQATGPEAGRGR 279
+ Q P GR
Sbjct: 283 PAGKPQGPPPPPQGGR 298
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 45.4 bits (106), Expect = 1e-04
Identities = 59/236 (25%), Positives = 82/236 (34%), Gaps = 29/236 (12%)
Query: 43 PPQPPPPQQQAQPA--LAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPG 100
P P P + AQP PP R VA T+PA + P P+G +P+ G
Sbjct: 1085 PATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQ---------RPPPPSGRSQPSPQAG 1135
Query: 101 RSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRS-EYQPSDAPFERETQYQKD 159
+GPGP ST+ P RA + P+ R + P ET
Sbjct: 1136 LAGPGP--AGYSTARPTIPP-----RAGVISAPQSHARASAGRLTPESQSKTSETSKGST 1188
Query: 160 FRAWPL-PRRGDHPWIPKPVQISAASQASAPILG-APKRRPQSQERWPVQAAAEAREQEA 217
F PL P+ P P + P+ P+ PQ P Q +R +
Sbjct: 1189 FLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSRSSHS 1248
Query: 218 APGGAGGLAAGKASGADE--RDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQAT 271
P A K +G + R++ K P E L + AQ VQ +
Sbjct: 1249 LPSEASSQPQVKTNGISDGKRESPLKIDP------FEDLSFNLLAVSKAQLSVQTS 1298
Score = 31.6 bits (70), Expect = 1.5
Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 30/167 (17%)
Query: 40 PGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGP 99
P P +PPPP ++QP+ P G GP P P P
Sbjct: 1115 PAPPQRPPPPSGRSQPS--------------PQAG-------LAGPGPAGYSTARPTI-P 1152
Query: 100 GRSG--PGPGLGSGSTSG---PADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDA--PFER 152
R+G P + +++G P + PEP +P++ + P + P +
Sbjct: 1153 PRAGVISAPQSHARASAGRLTPESQSKTSETSKGSTFLPEP-LKPQAAFPPQSSLPPPAQ 1211
Query: 153 ETQYQKDFRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQ 199
Q A P+P+ G P + P Q S++S + +PQ
Sbjct: 1212 RLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSRSSHSLPSEASSQPQ 1258
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/86 (37%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 43 PPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRS 102
P Q P P AQP P + A A PA A PAP P PA G
Sbjct: 4 PSQAPTPAPAAQPR--PLQSPAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTGTG 61
Query: 103 GPGPGL-GSGSTSGPADSVMRQDYRA 127
GPG G G+GS PA + Q RA
Sbjct: 62 GPGVGSGGAGSGGDPARPGLSQQQRA 87
Score = 33.9 bits (76), Expect = 0.30
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 37 TEHPGAPPQP---PPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGER 93
T P A P+P P P PA +P SA PA A A +TG G G
Sbjct: 9 TPAPAAQPRPLQSPAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTGT--GGPGVG 66
Query: 94 EPAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQR 132
AG G PGL + + +R RA K+++
Sbjct: 67 SGGAGSGGDPARPGLSQQQRASQRKAQVRGLPRAKKLEK 105
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 45.4 bits (106), Expect = 1e-04
Identities = 78/313 (24%), Positives = 118/313 (37%), Gaps = 46/313 (14%)
Query: 31 TKYSEATEHPGAPPQPPPPQQQ--AQPALAPPSARAVAIETQPAQGELDAVARATGPAPG 88
T+ + A PGA P P P + A+ S + +PA+ +ARA P PG
Sbjct: 1894 TQAAGALPGPGASPVPKTPARTLLAKQHKTQRSPVRIPFMQRPARRGPPPLARAV-PEPG 1952
Query: 89 PTGEREPAAGPGRSGPGPG-------LGSGSTSGPADSVMRQ-----DYRAWKVQRPEPS 136
P G AGPG G G L SGS S RQ + + +R E S
Sbjct: 1953 PRGRAGTEAGPGARGGRLGLVRVASALSSGSESSDRSGFRRQLTFIKESPGLRRRRSELS 2012
Query: 137 CRPRSEYQPSDAP--------------FERETQYQKDFRAWPLPRRGDHPWI-----PKP 177
+ P A R + + R P P R P +P
Sbjct: 2013 SAESAASAPQGASPRRGRPALPAVFLCSSRCEELRAAPRQGPAPARQRPPAARPSPGERP 2072
Query: 178 VQISAASQASAPILGAPKRRPQSQERW---PVQAAAEAREQEAAPGGAGGLAAGKASGAD 234
+ + + S + AP RP++ +R+ P + A + A AA ++S +
Sbjct: 2073 ARRTTSESPSRLPVRAPAARPETVKRYASLPHISVARRPDGAVPAAPASADAARRSSDGE 2132
Query: 235 ERDTRRKAGP--AWIVRRAEGLGH-EQTPLPAAQAQVQATGPEAGRG----RAAADALNR 287
R R A P W R E + H ++ LPA ++ + PE R +DA+ +
Sbjct: 2133 PRPLPRVAAPGTTWRRIRDEDVPHILRSTLPATALPLRGSTPEDAPAGPPPRKTSDAVVQ 2192
Query: 288 QIREEVASAVSSS 300
EEVA+ ++S
Sbjct: 2193 --TEEVAAPKTNS 2203
Score = 44.7 bits (104), Expect = 2e-04
Identities = 66/266 (24%), Positives = 94/266 (35%), Gaps = 33/266 (12%)
Query: 25 AVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPPSARA----VAIETQPAQGELDAVA 80
A+P FT+ E P + P P + A PA APP AR +A ET P + +
Sbjct: 1532 AIPRAFTR-----ERPQGRKEAPAPSKAA-PA-APPPARTQPSLIADETPPCYSLSSSAS 1584
Query: 81 RATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPR 140
+ P P P PG G G S P+ + +QR S PR
Sbjct: 1585 SLSEPEPSEPPAVHPRGREPAVTKDPGPGGGRDSSPSPRAAEE-----LLQRCISSALPR 1639
Query: 141 SEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQS 200
S + + D R P G + AS + A + S
Sbjct: 1640 RRPPVSGLRRRKPRATRLDER----PAEGSRERGEEAAGSDRASDLDSVEWRAIQEGANS 1695
Query: 201 QERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEG-LGHEQT 259
W QAAA RE + +G + G+ + + + G R+AEG +G +
Sbjct: 1696 IVTWLHQAAAATREASSESDSILSFVSGLSVGSTLQPPKHRKG-----RQAEGEMGSARR 1750
Query: 260 PLPAAQAQVQAT-------GPEAGRG 278
P A V+ + GPE RG
Sbjct: 1751 PEKRGAASVKTSGSPRSPAGPEKPRG 1776
Score = 38.9 bits (89), Expect = 0.009
Identities = 71/323 (21%), Positives = 110/323 (34%), Gaps = 48/323 (14%)
Query: 41 GAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPG 100
G P P++ A P LA P+A A P Q ++ R P T E + P
Sbjct: 1807 GTPGPRATPRKVAPPCLAQPAAPAKV--PSPGQQRSRSLHR-----PAKTSELATLSQPP 1859
Query: 101 RSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDF 160
RS P + + S + +P P RP P +
Sbjct: 1860 RSATPPARLAKTPSSSSSQTS-------PASQPLPRKRP---------PVTQAAGALPGP 1903
Query: 161 RAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRR--PQSQERWPVQAAAEAREQEAA 218
A P+P+ + K + + S P + P RR P P EA
Sbjct: 1904 GASPVPKTPARTLLAKQHK-TQRSPVRIPFMQRPARRGPPPLARAVPEPGPRGRAGTEAG 1962
Query: 219 PGGAGG------LAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQA-T 271
PG GG +A+ +SG++ D ++ + GL ++ L +A++ A
Sbjct: 1963 PGARGGRLGLVRVASALSSGSESSDRSGFRRQLTFIKESPGLRRRRSELSSAESAASAPQ 2022
Query: 272 GPEAGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKP-----P 326
G RGR A A+ + SS E RA P + P +P P
Sbjct: 2023 GASPRRGRPALPAV----------FLCSSRCEELRAAPRQGPAPARQRPPAARPSPGERP 2072
Query: 327 DDKMVHETSYSAQFKGEASKPTT 349
+ E+ + A++P T
Sbjct: 2073 ARRTTSESPSRLPVRAPAARPET 2095
Score = 34.3 bits (77), Expect = 0.23
Identities = 28/75 (37%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 25 AVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATG 84
A+P VF S E AP Q P P +Q PP+AR P+ GE A R T
Sbjct: 2032 ALPAVFLCSSRCEELRAAPRQGPAPARQ-----RPPAAR-------PSPGERPA-RRTTS 2078
Query: 85 PAPGPTGEREPAAGP 99
+P R PAA P
Sbjct: 2079 ESPSRLPVRAPAARP 2093
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 45.1 bits (105), Expect = 1e-04
Identities = 55/206 (26%), Positives = 80/206 (38%), Gaps = 35/206 (16%)
Query: 35 EATEHPGAPPQPPPPQQQAQPALAPPSARAVAIET-QPAQGELDAVARATGPAPGPTGER 93
EA P AP PPPP PP+ + + +P + +++A+ G A G
Sbjct: 525 EALPPPLAPLPPPPP---------PPARKGSYVSAFRPVVKDTESIAKLYGSAREAYG-- 573
Query: 94 EPAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRP------EPSCRPRSEYQPSD 147
AGP R GPGPG GSG P + + ++ P EP S P D
Sbjct: 574 ---AGPAR-GPGPGAGSGGYVSP--DFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDD 627
Query: 148 APFERETQYQKDFRAWPLPRRGDHPWIPKPVQISAA-SQASAPILGAPKRR------PQS 200
+ ET+ G+ P P S A A++P G+P+ R P
Sbjct: 628 EDAQEETEPSAPSAGG--GPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAG 685
Query: 201 QERWPVQAAAE--AREQEAAPGGAGG 224
+ + AA + R + + P G GG
Sbjct: 686 RPAFGDLAAEDLVRRPERSPPSGGGG 711
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 44.7 bits (104), Expect = 2e-04
Identities = 36/122 (29%), Positives = 41/122 (33%), Gaps = 22/122 (18%)
Query: 38 EHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGER---- 93
E P P+PPPP P APP A + E P A GP P T E
Sbjct: 18 EQPAESPEPPPPWPPPPPPPAPPPAPPLLSEASPEPIPEPCPELAPGPCPEATSESATEL 77
Query: 94 ------EPAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSD 147
EPA P S P P + PA PEP+ P +E P
Sbjct: 78 YTEPTPEPATEPA-SEPAPEPATEPAPEPATE-----------PAPEPAPEPATESAPEP 125
Query: 148 AP 149
P
Sbjct: 126 TP 127
Score = 28.9 bits (63), Expect = 9.7
Identities = 32/118 (27%), Positives = 38/118 (32%), Gaps = 17/118 (14%)
Query: 33 YSEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGE 92
Y+E T P P P + PA P A A E P A A P P P E
Sbjct: 78 YTEPTPEPATEPASEPAPE---PATEP--APEPATEPAPEPAPEPATESAPEPTPEPALE 132
Query: 93 REPAAGPGRSGP-GPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAP 149
P P + P L T P + PE E++PS AP
Sbjct: 133 SVPEPAPELTPEVAPELAPEPTPEPVTEL-----------APEFCPEAAPEFRPSPAP 179
Score = 28.9 bits (63), Expect = 9.7
Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 17/113 (15%)
Query: 54 QPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGST 113
+PA P S A T+PA AT PAP P E + P P P S
Sbjct: 84 EPATEPASEPAPEPATEPAP------EPATEPAPEPAPEPATESAP---EPTPEPALESV 134
Query: 114 SGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLP 166
PA + + PEP+ P +E P P + +FR P P
Sbjct: 135 PEPAPELTPE---VAPELAPEPTPEPVTELAPEFCP-----EAAPEFRPSPAP 179
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 44.7 bits (104), Expect = 2e-04
Identities = 66/258 (25%), Positives = 96/258 (37%), Gaps = 40/258 (15%)
Query: 44 PQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSG 103
P PPPP++ + +++ PS ++ P GP G TG R +G
Sbjct: 786 PPPPPPKRLS--SVSGPSPEPPPLDESP------------GPKEGATGPRRRTLSE-PAG 830
Query: 104 PGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDA-PFERE---TQYQKD 159
P G + +GPA ++ P P P S + PF E T Q+
Sbjct: 831 PSEPPGPPAPAGPASDTEEEE--------PGPEGTPPSRGSSGEGLPFAEEGNLTIKQRP 882
Query: 160 FRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEA-REQEAA 218
A P PR P P + S + KRRP+ +ER P+Q A A A
Sbjct: 883 KPAGPPPRE-----TPVPPGLDFNLTESDTV----KRRPKCREREPLQTALLAFGVASAT 933
Query: 219 PGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRG 278
PG A L + + + + P+ + A+G+ P PA Q V P G
Sbjct: 934 PGPAAPLPSPTPGESPPASSLPQPEPSSL--PAQGVPTPLAPSPAMQPPVPPC-PGPGLE 990
Query: 279 RAAADALNRQIREEVASA 296
+AA N + A A
Sbjct: 991 SSAASRWNGETEPPAAPA 1008
Score = 34.3 bits (77), Expect = 0.23
Identities = 61/251 (24%), Positives = 83/251 (33%), Gaps = 48/251 (19%)
Query: 36 ATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAV---------ARATGPA 86
A + G P PP + + PP + P QG V + A GP
Sbjct: 634 APQPSGGDPSPPQERNLPEGTERPPKL----CSSLPGQGPPPYVFMYPQGSPSSPAPGPP 689
Query: 87 PGPTGEREPAAGPGRSGPGP-----------------GLGSGSTSGPADSVMRQDYRAWK 129
PG AGP + P P G G GP S + A
Sbjct: 690 PGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGPVGSTLGS--YATL 747
Query: 130 VQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQISAASQASAP 189
+RP S R+ + P R T + F A R+G P P P ++S+ S S
Sbjct: 748 TRRPGRSALVRTSPSVTPTP-ARGTPRSQSF-ALRARRKGPPP--PPPKRLSSVSGPS-- 801
Query: 190 ILGAPKRRPQSQERWPVQAAAEAR----EQEAAPGGAGG--LAAGKASGADERDTRRKAG 243
P+ P + P + A R + A P G AG AS +E + +
Sbjct: 802 ----PEPPPLDESPGPKEGATGPRRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGT 857
Query: 244 PAWIVRRAEGL 254
P EGL
Sbjct: 858 PPSRGSSGEGL 868
Score = 32.7 bits (73), Expect = 0.67
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 34 SEATEHPGAP-PQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGE 92
+ AT P AP P P P + +L P ++ PAQG V P+P
Sbjct: 930 ASATPGPAAPLPSPTPGESPPASSLPQPEPSSL-----PAQG----VPTPLAPSPAMQPP 980
Query: 93 REPAAGPGRSGPGPGLGSGSTSGPA 117
P GPG +G T PA
Sbjct: 981 VPPCPGPGLESSAASRWNGETEPPA 1005
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 44.7 bits (104), Expect = 2e-04
Identities = 66/258 (25%), Positives = 96/258 (37%), Gaps = 40/258 (15%)
Query: 44 PQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSG 103
P PPPP++ + +++ PS ++ P GP G TG R +G
Sbjct: 868 PPPPPPKRLS--SVSGPSPEPPPLDESP------------GPKEGATGPRRRTLSE-PAG 912
Query: 104 PGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDA-PFERE---TQYQKD 159
P G + +GPA ++ P P P S + PF E T Q+
Sbjct: 913 PSEPPGPPAPAGPASDTEEEE--------PGPEGTPPSRGSSGEGLPFAEEGNLTIKQRP 964
Query: 160 FRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEA-REQEAA 218
A P PR P P + S + KRRP+ +ER P+Q A A A
Sbjct: 965 KPAGPPPRE-----TPVPPGLDFNLTESDTV----KRRPKCREREPLQTALLAFGVASAT 1015
Query: 219 PGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRG 278
PG A L + + + + P+ + A+G+ P PA Q V P G
Sbjct: 1016 PGPAAPLPSPTPGESPPASSLPQPEPSSL--PAQGVPTPLAPSPAMQPPVPPC-PGPGLE 1072
Query: 279 RAAADALNRQIREEVASA 296
+AA N + A A
Sbjct: 1073 SSAASRWNGETEPPAAPA 1090
Score = 34.3 bits (77), Expect = 0.23
Identities = 61/251 (24%), Positives = 83/251 (33%), Gaps = 48/251 (19%)
Query: 36 ATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAV---------ARATGPA 86
A + G P PP + + PP + P QG V + A GP
Sbjct: 716 APQPSGGDPSPPQERNLPEGTERPPKL----CSSLPGQGPPPYVFMYPQGSPSSPAPGPP 771
Query: 87 PGPTGEREPAAGPGRSGPGP-----------------GLGSGSTSGPADSVMRQDYRAWK 129
PG AGP + P P G G GP S + A
Sbjct: 772 PGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGPVGSTLGS--YATL 829
Query: 130 VQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQISAASQASAP 189
+RP S R+ + P R T + F A R+G P P P ++S+ S S
Sbjct: 830 TRRPGRSALVRTSPSVTPTP-ARGTPRSQSF-ALRARRKGPPP--PPPKRLSSVSGPS-- 883
Query: 190 ILGAPKRRPQSQERWPVQAAAEAR----EQEAAPGGAGG--LAAGKASGADERDTRRKAG 243
P+ P + P + A R + A P G AG AS +E + +
Sbjct: 884 ----PEPPPLDESPGPKEGATGPRRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGT 939
Query: 244 PAWIVRRAEGL 254
P EGL
Sbjct: 940 PPSRGSSGEGL 950
Score = 32.7 bits (73), Expect = 0.67
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 34 SEATEHPGAP-PQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGE 92
+ AT P AP P P P + +L P ++ PAQG V P+P
Sbjct: 1012 ASATPGPAAPLPSPTPGESPPASSLPQPEPSSL-----PAQG----VPTPLAPSPAMQPP 1062
Query: 93 REPAAGPGRSGPGPGLGSGSTSGPA 117
P GPG +G T PA
Sbjct: 1063 VPPCPGPGLESSAASRWNGETEPPA 1087
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 44.7 bits (104), Expect = 2e-04
Identities = 61/257 (23%), Positives = 84/257 (32%), Gaps = 29/257 (11%)
Query: 34 SEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGER 93
S ++ P PQ PPPQ QP PP P G G GP +
Sbjct: 170 SRSSRSPPGKPQGPPPQGGNQPQ-GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 228
Query: 94 EPAAGPGRSGPG-----PGLGSGSTSGPADSVMRQD----YRAWKVQRPEPSCRPRSEYQ 144
+ + RS PG P G GP + K Q P P +P+
Sbjct: 229 DNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP-P 287
Query: 145 PSDAPFERETQYQKDFRAWPLPRRGDHPWIPKP----VQISAASQASAPILGAPKRRPQS 200
P R ++ P P+ G+ P P P Q + P P +PQ
Sbjct: 288 PQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG 347
Query: 201 QERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRRKAGPAWIVRRAEGLGHEQTP 260
P Q +++R + P GK G +++ GP A G +
Sbjct: 348 P---PPQGGSKSRSARSPP--------GKPQGPPQQEGNNPQGPP---PPAGGNPQQPQA 393
Query: 261 LPAAQAQVQATGPEAGR 277
PA Q Q P+ GR
Sbjct: 394 PPAGQPQGPPRPPQGGR 410
Score = 36.6 bits (83), Expect = 0.046
Identities = 48/198 (24%), Positives = 65/198 (32%), Gaps = 19/198 (9%)
Query: 40 PGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQG-----ELDAVARATGPAPGPTGERE 94
P PQ PPPQ QP PP + P QG + GP P R
Sbjct: 53 PPGKPQGPPPQGGNQPQGPPPPPGKP--QGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRS 110
Query: 95 PAAGPGRSGPGPGLGSGSTSGPADSVMRQD----YRAWKVQRPEPSCRPRSEYQPSDAPF 150
P + PG+ P G GP + K Q P P +P+ P
Sbjct: 111 PRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP-PPQGDNK 169
Query: 151 ERETQYQKDFRAWPLPRRGDHPWIPKP----VQISAASQASAPILGAPKRRPQSQERWPV 206
R ++ P P+ G+ P P P Q + P P +PQ P
Sbjct: 170 SRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP---PP 226
Query: 207 QAAAEAREQEAAPGGAGG 224
Q +++ + PG G
Sbjct: 227 QGDNKSQSARSPPGKPQG 244
Score = 35.8 bits (81), Expect = 0.079
Identities = 49/205 (23%), Positives = 67/205 (32%), Gaps = 20/205 (9%)
Query: 34 SEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQG-----ELDAVARATGPAP- 87
S + P PQ PPPQ QP PP + P QG + GP P
Sbjct: 108 SRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP--QGPPPQGGNKPQGPPPPGKPQGPPPQ 165
Query: 88 GPTGEREPAAGPGRSGPGPGLGSGSTSGPADSVMRQD----YRAWKVQRPEPSCRPRSEY 143
G R + PG+ P G GP + K Q P P +P+
Sbjct: 166 GDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP- 224
Query: 144 QPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKP----VQISAASQASAPILGAPKRRPQ 199
P + + P P+ G+ P P P Q + P P +PQ
Sbjct: 225 PPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 284
Query: 200 SQERWPVQAAAEAREQEAAPGGAGG 224
P Q +++R + PG G
Sbjct: 285 GP---PPQGGSKSRSSRSPPGKPQG 306
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 44.7 bits (104), Expect = 2e-04
Identities = 96/401 (23%), Positives = 146/401 (36%), Gaps = 86/401 (21%)
Query: 61 SARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSV 120
S+ A++ P G D + GP P AA PG P PGL S +++G +
Sbjct: 1399 SSAISALDDPPLAGPKDT-STPDGPPLAPA-----AAVPGPP-PLPGLPSANSNGTPEPP 1451
Query: 121 MRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQI 180
+ ++ P P+ P+ + P P + A P P P +P P
Sbjct: 1452 LLEEKPP---PTPPPAPTPQPQPPPPPPPPQPALPSPPPLVA-PTPSSPPPPPLPPPPPP 1507
Query: 181 SAASQ------ASAPILGAPKR----RPQSQERWPVQAAAEAREQE-AAPGGAGGLAAGK 229
+ S A+AP+ P+ P+ E + A++QE AA G AG+
Sbjct: 1508 AMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETAAVCGETDEEAGE 1567
Query: 230 ASGAD---ERD-----------------TRRKAGPAWIVRRAEGLGHEQTP-LPAAQAQV 268
+ G ERD T R+ P W V++A L + TP + Q Q
Sbjct: 1568 SGGEGIFRERDEFVIRAEDIPSLKLALQTGREPPPIWRVQKA--LLQKFTPEIKDGQRQF 1625
Query: 269 QATGPEAGRGRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDD 328
AT G DA NR R V + + ++ R KP ++PP
Sbjct: 1626 CATSNYLGY---FGDAKNRYQRLYVKFLENVNKKDYVRVCA---------RKPWHRPP-- 1671
Query: 329 KMVHETSYSAQFKGEASKPTTADNKVIDRRRIRSLYSEPFKEPPKVEKPSVQSSKPKKTS 388
+ G+A P +A S P PPK P + P+KT+
Sbjct: 1672 -------VPVRRSGQAKNPVSAGGS-----------SAP---PPKAPAPPPKPETPEKTT 1710
Query: 389 ASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTKPDDKEQSKE 429
+ P +Q + + E PS +P +KE+ KE
Sbjct: 1711 SEKPP------EQTPETAMPEPPAPEKPSLLRPVEKEKEKE 1745
Score = 35.0 bits (79), Expect = 0.14
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 40 PGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGP 99
P PQPPPP QPAL P + P L P+P P PAA P
Sbjct: 1465 PTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPP--PPPPAAAP 1522
Query: 100 GRSGP 104
+ P
Sbjct: 1523 LAAPP 1527
Score = 34.3 bits (77), Expect = 0.23
Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 34 SEATEHPGAPPQPP--PPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTG 91
S+A + G PPQPP PP P A + QG+L V P P
Sbjct: 470 SKAPSYSGGPPQPPSGPPP--------PGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHS 521
Query: 92 EREPAAGPGRS---GPGPGL-GSGSTSGPA 117
+ P A P S G P L G G GP+
Sbjct: 522 QGLPTASPSLSYSTGHSPALSGHGGGWGPS 551
Score = 33.9 bits (76), Expect = 0.30
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 25/94 (26%)
Query: 41 GAPPQPPPPQQ----------------QAQPALAPPSARAVAIETQPAQGELDAVARATG 84
GA P PPPP++ AQP PP A A+ G ++
Sbjct: 270 GAAPGPPPPERALPRQDTVIKHYQRPASAQPPPPPPPAHALQ-HYLSCGGSYPSMGHRAN 328
Query: 85 PAPGPTGEREPAAG---PGRSGPGPGLGSGSTSG 115
A P G EP+ G P ++GP SG+T+G
Sbjct: 329 LACSPLGGGEPSPGAGEPSKAGP-----SGATAG 357
Score = 32.0 bits (71), Expect = 1.1
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 41 GAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPG 100
G +PPPP+ A P A A T A G A +A P G+ + GP
Sbjct: 401 GGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSP-----GQPQGLLGPQ 455
Query: 101 RSGPGPGLGSGSTSGPADS 119
G G G G A S
Sbjct: 456 AYGQGFGGGQAQDLSKAPS 474
Score = 31.6 bits (70), Expect = 1.5
Identities = 27/117 (23%), Positives = 36/117 (30%), Gaps = 10/117 (8%)
Query: 42 APPQPPPPQQQAQPA----LAPPSARAVAIETQPAQGELDAVARATGPAPGPTGER---- 93
+PP PPP Q QP L + + P +L + P+P P+ +
Sbjct: 763 SPPPPPPTAQSTQPTPHGLLLEAGGPDLPLVLPPPPPQLLPSVLSHAPSPSPSASKVGVH 822
Query: 94 --EPAAGPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDA 148
EPA G P P P + P P RP P A
Sbjct: 823 LLEPATRDGAPQPPPPPPPPPPPMPLQLEAHLRSHGLEPAAPSPRLRPEESLDPPGA 879
Score = 31.6 bits (70), Expect = 1.5
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
Query: 24 IAVPLVFTKYSEATEHPGAPPQPPPPQQQAQ-----------PALAPPSAR-AVAIETQP 71
+ V L+ + P PP PPPP Q PA P R +++
Sbjct: 819 VGVHLLEPATRDGAPQPPPPPPPPPPPMPLQLEAHLRSHGLEPAAPSPRLRPEESLDPPG 878
Query: 72 AQGELDAVARATGPAPGPTGEREP 95
A EL PAPG TG P
Sbjct: 879 AMQELLGALEPLPPAPGDTGVGPP 902
Score = 30.4 bits (67), Expect = 3.3
Identities = 65/262 (24%), Positives = 82/262 (31%), Gaps = 65/262 (24%)
Query: 40 PGAPPQPPPPQQQAQP--ALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAA 97
PG P PPPP+ LA SA A A E Q + +G APGP
Sbjct: 229 PGPPDPPPPPRHLPTQFNLLASSSAAAAAAEQSSPQ-----LYNFSGAAPGP-------- 275
Query: 98 GPGRSGPGPGLGSGSTSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQ 157
P ++ RQD QRP + P P P Y
Sbjct: 276 ----------------PPPERALPRQDTVIKHYQRPASAQPP-----PPPPPAHALQHY- 313
Query: 158 KDFRAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRP---QSQERWPVQAAAEARE 214
L G +P + A+ A +P LG + P + + P A A A
Sbjct: 314 -------LSCGGSYPSMG-----HRANLACSP-LGGGEPSPGAGEPSKAGPSGATAGASG 360
Query: 215 QEAAPGGAGGLAAGKASGADE---RDTRRKAGPAWIVRRAEGLGHEQTPLPAAQAQVQ-- 269
+ P AGG AG G + K G A G P A + Q
Sbjct: 361 RATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGGATRPPPPRSTATPKCQSL 420
Query: 270 -------ATGPEAGRGRAAADA 284
ATG +G G A A
Sbjct: 421 GGPAAAYATGKASGAGGAGGQA 442
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/32 (40%), Positives = 13/32 (40%)
Query: 40 PGAPPQPPPPQQQAQPALAPPSARAVAIETQP 71
P P PPPP A P APP A P
Sbjct: 1507 PAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDP 1538
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.126 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,847,839
Number of Sequences: 37866
Number of extensions: 1328877
Number of successful extensions: 19648
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 1329
Number of HSP's that attempted gapping in prelim test: 11352
Number of HSP's gapped (non-prelim): 7414
length of query: 439
length of database: 18,247,518
effective HSP length: 105
effective length of query: 334
effective length of database: 14,271,588
effective search space: 4766710392
effective search space used: 4766710392
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.