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Search of human proteins with 13375632
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13375632 homeobox D1 [Homo sapiens]
(328 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13375632 homeobox D1 [Homo sapiens] 669 0.0
gi|5031761 homeobox A1 isoform a [Homo sapiens] 158 7e-39
gi|24497526 homeobox B1 [Homo sapiens] 153 2e-37
gi|19923391 homeobox D3 [Homo sapiens] 110 2e-24
gi|89257348 homeo box HB9 [Homo sapiens] 100 2e-21
gi|24497513 homeobox A3 isoform a [Homo sapiens] 99 7e-21
gi|13562112 homeobox A3 isoform a [Homo sapiens] 99 7e-21
gi|23397672 homeobox D4 [Homo sapiens] 93 3e-19
gi|11321638 homeobox C5 [Homo sapiens] 93 4e-19
gi|4504465 homeobox B2 [Homo sapiens] 93 4e-19
gi|182765442 homeobox A10 isoform a [Homo sapiens] 90 2e-18
gi|24497538 homeobox C4 [Homo sapiens] 90 2e-18
gi|24497540 homeobox C4 [Homo sapiens] 90 2e-18
gi|10140847 homeobox A2 [Homo sapiens] 90 3e-18
gi|24497515 homeobox A3 isoform b [Homo sapiens] 88 1e-17
gi|148613882 homeobox A4 [Homo sapiens] 88 1e-17
gi|24497517 homeobox A5 [Homo sapiens] 87 3e-17
gi|84570137 homeobox B3 [Homo sapiens] 85 8e-17
gi|121114296 caudal type homeobox 1 [Homo sapiens] 84 2e-16
gi|23503237 homeobox B6 [Homo sapiens] 84 2e-16
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 83 4e-16
gi|24497556 homeobox A7 [Homo sapiens] 83 4e-16
gi|13273315 homeobox B4 [Homo sapiens] 83 4e-16
gi|4504469 homeobox B5 [Homo sapiens] 82 9e-16
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 81 1e-15
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 81 1e-15
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 81 1e-15
gi|169636435 caudal type homeobox 2 [Homo sapiens] 80 2e-15
gi|194363768 homeobox D9 [Homo sapiens] 80 2e-15
gi|13489077 homeobox A6 [Homo sapiens] 79 4e-15
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 669 bits (1726), Expect = 0.0
Identities = 328/328 (100%), Positives = 328/328 (100%)
Query: 1 MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGNGDGAFVSCLPLAAAR 60
MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGNGDGAFVSCLPLAAAR
Sbjct: 1 MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGNGDGAFVSCLPLAAAR 60
Query: 61 PSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAYDFPGV 120
PSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAYDFPGV
Sbjct: 61 PSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAYDFPGV 120
Query: 121 LGRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGEPGPFPACLKASADGHPGAFQT 180
LGRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGEPGPFPACLKASADGHPGAFQT
Sbjct: 121 LGRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGEPGPFPACLKASADGHPGAFQT 180
Query: 181 ASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQ 240
ASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQ
Sbjct: 181 ASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQ 240
Query: 241 LTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKREREGLLATAIPVA 300
LTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKREREGLLATAIPVA
Sbjct: 241 LTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKREREGLLATAIPVA 300
Query: 301 PLQLPLSGTTPTKFIKNPGSPSQSQEPS 328
PLQLPLSGTTPTKFIKNPGSPSQSQEPS
Sbjct: 301 PLQLPLSGTTPTKFIKNPGSPSQSQEPS 328
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 158 bits (399), Expect = 7e-39
Identities = 108/257 (42%), Positives = 132/257 (51%), Gaps = 41/257 (15%)
Query: 92 EPGAAPAAAAGGADYGFLGSGPAYDF--------PGVLGRAADDGGSHVHYATSAVFSGG 143
+P + G Y GP+Y P L + AD G + A AV+SG
Sbjct: 76 QPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVSGGYPQCAP-AVYSGN 134
Query: 144 GSFLLSGQVDYAAFGEPGPFPACLKASADGHPGAFQTASPAPGTYPKSVSP--------- 194
L S V + + A H + S A TY S+SP
Sbjct: 135 ---LSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEAC 191
Query: 195 ---ASGLPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFN 251
AS + TF+WMKVKRN K GK+ EYG +A+RTNF+TKQLTELEKEFHFN
Sbjct: 192 RSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFN 251
Query: 252 KYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKREREGLLATAIPVAPLQLPLSGTTP 311
KYLTRARR+EIA L LN+TQVKIWFQNRRMKQKKRE+EGL LP+S TP
Sbjct: 252 KYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGL-----------LPISPATP 300
Query: 312 TKFIKNPGSPSQSQEPS 328
PG+ +++E S
Sbjct: 301 ------PGNDEKAEESS 311
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 153 bits (387), Expect = 2e-37
Identities = 132/333 (39%), Positives = 163/333 (48%), Gaps = 52/333 (15%)
Query: 1 MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGNGDGAFVSCLPLAAAR 60
M+S+LEY C+ G S F S A+ V A G G +
Sbjct: 6 MNSFLEYPLCNR-GPSAYSAHSAPTSFPPSSAQAVDSY-ASEGRYGGGLSSPAFQQNSGY 63
Query: 61 PSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAYDFPGV 120
P+ PP+ P P +AP G APAA + GP+ +P
Sbjct: 64 PAQQPPSTLGVPF--PSSAPS------------GYAPAACSPSY-------GPSQYYP-- 100
Query: 121 LGRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGE-PGPFPACLKASADGHP--GA 177
LG++ DGG + H ++ GG L G Y A G PGP+P HP G
Sbjct: 101 LGQSEGDGG-YFHPSSYGAQLGG---LSDG---YGAGGAGPGPYPP-------QHPPYGN 146
Query: 178 FQTASPAPGTYPKSVSPASGLPAAFS-------TFEWMKVKRNASKKGKLAEYGAASPSS 230
QTAS AP Y +S P TF+WMKVKRN K K++E G SPS
Sbjct: 147 EQTASFAPA-YADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSG 205
Query: 231 AIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRER- 289
+RTNF+T+QLTELEKEFHFNKYL+RARR+EIA L LN+TQVKIWFQNRRMKQKKRER
Sbjct: 206 -LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 264
Query: 290 EGLLATAIPVAPLQLPLSGTTPTKFIKNPGSPS 322
EG + A P P + + + SPS
Sbjct: 265 EGRVPPAPPGCPKEAAGDASDQSTCTSPEASPS 297
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 110 bits (274), Expect = 2e-24
Identities = 84/228 (36%), Positives = 110/228 (48%), Gaps = 21/228 (9%)
Query: 97 PAAAAGGADYGFLGSGPAYDFPGVLGRAADDG----GSHVHYATSAVFSGGGSFLLSGQV 152
P AAA D + GS + L A G GS + T GGG G
Sbjct: 52 PPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLN 111
Query: 153 DYAAFGEPGPFPACLKASADGHPGAFQTASPAPGTYPKSVSPASGLPAAFST--FEWMKV 210
+P P P L S+ +PG P PK AS A S F WMK
Sbjct: 112 SEQQPPQPPPPPPTLPPSSPTNPGG-----GVPAKKPKGGPNASSSSATISKQIFPWMKE 166
Query: 211 KR-NASKKGKLAEYGAA----SP----SSAIRTNFSTKQLTELEKEFHFNKYLTRARRIE 261
R N+ +K A G + SP S +RT +++ QL ELEKEFHFN+YL R RR+E
Sbjct: 167 SRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVE 226
Query: 262 IANCLHLNDTQVKIWFQNRRMKQKKRER-EGLLATAIPVAPLQLPLSG 308
+AN L+L + Q+KIWFQNRRMK KK ++ +G+L + +P + P G
Sbjct: 227 MANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLG 274
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 100 bits (249), Expect = 2e-21
Identities = 88/288 (30%), Positives = 127/288 (44%), Gaps = 27/288 (9%)
Query: 25 PKFCRSDARPVALQPAFPL------GNGDGAFVSCLPLAAARPSPS-PPAAPA---RPSV 74
P+ + + P+AL + G G G S + P+ S PPAAPA R
Sbjct: 18 PRAASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASSEPPAAPADRLRAES 77
Query: 75 PPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAYDFPGVLGRAADDGGSHVHY 134
P P A C L +PG A GG G G + PG AA +
Sbjct: 78 PSPPRLLAAHCAL--LPKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAAAAAAAAAAAAG 135
Query: 135 ATSAVFSGGGSFLLSGQVDYAA-FGEP--GPFPACLKASADG-HPGAFQTASPAPGTYPK 190
+ GG+ +G AA +G P G A A+ G HP + G +P
Sbjct: 136 GLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHP- 194
Query: 191 SVSPASGLPAAFSTFE---WMKVKRNASKKGKLAEYGAASPSSAI------RTNFSTKQL 241
PA + TF+ W++ K+ ++ + + S+ + RT F+++QL
Sbjct: 195 -AHPADPIKLGAGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQL 253
Query: 242 TELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRER 289
ELE +F NKYL+R +R E+A L L +TQVKIWFQNRRMK K+ ++
Sbjct: 254 LELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 301
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 98.6 bits (244), Expect = 7e-21
Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 17/161 (10%)
Query: 160 PGPFPACLKASADGHPGAFQTASPAPGTYPKSVSPASGLPA-AFSTFEWMKVKRNASKK- 217
P P PA + P + +P P KS P P A F WMK R +K+
Sbjct: 112 PAPTPAAPPPPSSASPPQNASNNPTPANAAKS--PLLNSPTVAKQIFPWMKESRQNTKQK 169
Query: 218 -----------GKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCL 266
G + G AS A RT +++ QL ELEKEFHFN+YL R RR+E+AN L
Sbjct: 170 TSSSSSGESCAGDKSPPGQASSKRA-RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLL 228
Query: 267 HLNDTQVKIWFQNRRMKQKKRER-EGLLATAIPVAPLQLPL 306
+L + Q+KIWFQNRRMK KK ++ +G+L ++ +P + P+
Sbjct: 229 NLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPV 269
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 55 PLAAARPSPSPPAAPARPSVPPPAAP 80
P AA P+P PP +P P PAAP
Sbjct: 94 PPQAAPPAPQPPQPAPQPPAPTPAAP 119
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 98.6 bits (244), Expect = 7e-21
Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 17/161 (10%)
Query: 160 PGPFPACLKASADGHPGAFQTASPAPGTYPKSVSPASGLPA-AFSTFEWMKVKRNASKK- 217
P P PA + P + +P P KS P P A F WMK R +K+
Sbjct: 112 PAPTPAAPPPPSSASPPQNASNNPTPANAAKS--PLLNSPTVAKQIFPWMKESRQNTKQK 169
Query: 218 -----------GKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCL 266
G + G AS A RT +++ QL ELEKEFHFN+YL R RR+E+AN L
Sbjct: 170 TSSSSSGESCAGDKSPPGQASSKRA-RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLL 228
Query: 267 HLNDTQVKIWFQNRRMKQKKRER-EGLLATAIPVAPLQLPL 306
+L + Q+KIWFQNRRMK KK ++ +G+L ++ +P + P+
Sbjct: 229 NLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPV 269
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 55 PLAAARPSPSPPAAPARPSVPPPAAP 80
P AA P+P PP +P P PAAP
Sbjct: 94 PPQAAPPAPQPPQPAPQPPAPTPAAP 119
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 93.2 bits (230), Expect = 3e-19
Identities = 69/194 (35%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 93 PGAAPAAAAGGADYGFLGSGPAYDFPGVLGRAADDGGSHVHYATSAVFSGGGSFLLSGQV 152
PG P G +G G GP P G + GG HYA
Sbjct: 49 PGLYPRPDFGEQPFGGSGPGPGSALPA-RGHGQEPGGPGGHYA----------------- 90
Query: 153 DYAAFGEPGPFPACLKASADGHPGAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKR 212
A GEP P P P A + PK + L + WMK
Sbjct: 91 ---APGEPCPAPPAPP------PAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVH 141
Query: 213 NASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQ 272
S Y P + RT ++ +Q+ ELEKEFHFN+YLTR RRIEIA+ L L++ Q
Sbjct: 142 VNSVN---PNYTGGEPKRS-RTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQ 197
Query: 273 VKIWFQNRRMKQKK 286
+KIWFQNRRMK KK
Sbjct: 198 IKIWFQNRRMKWKK 211
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 92.8 bits (229), Expect = 4e-19
Identities = 69/163 (42%), Positives = 83/163 (50%), Gaps = 39/163 (23%)
Query: 152 VDYAAFGEPGPF-PACLKASADGH-PGAFQTASPAPGTYP-KSVSPA------------- 195
VD AA P PAC A+A GH PG + A PG Y K+ PA
Sbjct: 61 VDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKE 120
Query: 196 ----SGLPAAFST-------FEWM-KVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLTE 243
+G PA S + WM K+ + GK + RT+++ Q E
Sbjct: 121 EQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRS-----------RTSYTRYQTLE 169
Query: 244 LEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKK 286
LEKEFHFN+YLTR RRIEIAN L LN+ Q+KIWFQNRRMK KK
Sbjct: 170 LEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKK 212
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 92.8 bits (229), Expect = 4e-19
Identities = 64/181 (35%), Positives = 82/181 (45%), Gaps = 25/181 (13%)
Query: 169 ASADGHPGAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKKGKLAEY----- 223
AS P + + A P P P P A F WMK K++A K + A
Sbjct: 60 ASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPA-PEFPWMKEKKSAKKPSQSATSPSPAA 118
Query: 224 ------GAASPSSAI-------------RTNFSTKQLTELEKEFHFNKYLTRARRIEIAN 264
G SP+ + RT ++ QL ELEKEFHFNKYL R RR+EIA
Sbjct: 119 SAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAA 178
Query: 265 CLHLNDTQVKIWFQNRRMKQKKREREGLLATAIPVAPLQLPLSGTTPTKFIKNPGSPSQS 324
L L + QVK+WFQNRRMK K++ + P P L + +PG PS S
Sbjct: 179 LLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSAS 238
Query: 325 Q 325
+
Sbjct: 239 R 239
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 90.1 bits (222), Expect = 2e-18
Identities = 87/271 (32%), Positives = 104/271 (38%), Gaps = 47/271 (17%)
Query: 61 PSPSPPAAPARPSVPPPAAPQYAQCTL------EGAY----EPGAAPAAAAGGADYGFLG 110
P P P P P PP APQ C+ E +Y P +A A+
Sbjct: 133 PPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFP 192
Query: 111 SGPAYD-----------FPGV--LGRAADDGGSHVHYATSAVFSGGGSF----------- 146
GP D PG L +A + A G G F
Sbjct: 193 RGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDL 252
Query: 147 ---LLSGQVDYA----AFGEPGPFPACLKASADGHPGAFQTASPAPGTYPKSVSPASGLP 199
L SG D A A P P P S G G + A + + +SPA P
Sbjct: 253 PPALASGSADAARKERALDSPPP-PTLACGSGGGSQG--DEEAHASSSAAEELSPA---P 306
Query: 200 AAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARR 259
+ S K SK A + A R ++ Q ELEKEF FN YLTR RR
Sbjct: 307 SESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERR 366
Query: 260 IEIANCLHLNDTQVKIWFQNRRMKQKKRERE 290
+EI+ +HL D QVKIWFQNRRMK KK RE
Sbjct: 367 LEISRSVHLTDRQVKIWFQNRRMKLKKMNRE 397
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 90.1 bits (222), Expect = 2e-18
Identities = 59/140 (42%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
Query: 176 GAFQTASPAPG--TYPKSVSPASGLPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIR 233
GA + SPAP + P P+S + WMK K + S Y P + R
Sbjct: 105 GASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMK-KIHVSTVNP--NYNGGEPKRS-R 160
Query: 234 TNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRER--EG 291
T ++ +Q+ ELEKEFH+N+YLTR RRIEIA+ L L++ Q+KIWFQNRRMK KK R
Sbjct: 161 TAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNT 220
Query: 292 LLATAIPVAPLQLPLSGTTP 311
+ +A P LS TP
Sbjct: 221 KVRSAPPAGAAPSTLSAATP 240
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 90.1 bits (222), Expect = 2e-18
Identities = 59/140 (42%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
Query: 176 GAFQTASPAPG--TYPKSVSPASGLPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIR 233
GA + SPAP + P P+S + WMK K + S Y P + R
Sbjct: 105 GASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMK-KIHVSTVNP--NYNGGEPKRS-R 160
Query: 234 TNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRER--EG 291
T ++ +Q+ ELEKEFH+N+YLTR RRIEIA+ L L++ Q+KIWFQNRRMK KK R
Sbjct: 161 TAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNT 220
Query: 292 LLATAIPVAPLQLPLSGTTP 311
+ +A P LS TP
Sbjct: 221 KVRSAPPAGAAPSTLSAATP 240
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 89.7 bits (221), Expect = 3e-18
Identities = 60/155 (38%), Positives = 76/155 (49%), Gaps = 29/155 (18%)
Query: 160 PGPFPACLKASADG-HP--GAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASK 216
P PF + + G HP GA P+P S PA L + WMK K+ A K
Sbjct: 49 PPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPP--EYPWMKEKKAAKK 106
Query: 217 KGKLAEYGAASPSSA------------------------IRTNFSTKQLTELEKEFHFNK 252
L AA+ ++A +RT ++ QL ELEKEFHFNK
Sbjct: 107 TALLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNK 166
Query: 253 YLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKR 287
YL R RR+EIA L L + QVK+WFQNRRMK K++
Sbjct: 167 YLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 87.8 bits (216), Expect = 1e-17
Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 209 KVKRNASKKGKLAEYGAASPSSA----IRTNFSTKQLTELEKEFHFNKYLTRARRIEIAN 264
K K ++S G+ + P A RT +++ QL ELEKEFHFN+YL R RR+E+AN
Sbjct: 9 KQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAN 68
Query: 265 CLHLNDTQVKIWFQNRRMKQKKRER-EGLLATAIPVAPLQLPL 306
L+L + Q+KIWFQNRRMK KK ++ +G+L ++ +P + P+
Sbjct: 69 LLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPV 111
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 87.8 bits (216), Expect = 1e-17
Identities = 85/250 (34%), Positives = 108/250 (43%), Gaps = 50/250 (20%)
Query: 65 PPAAPAR------PSVP------PPAAPQYAQCTLEGAYEPGAAPAAAAGGAD----YGF 108
PPA P + P +P P A YA T P AA A G AD YG+
Sbjct: 45 PPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGY 104
Query: 109 LG-SGPAYDFPGVLGRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGEPGPFPACL 167
G + P A G +H +A S +L Q+ P P
Sbjct: 105 RGGASPGRPPQPEQPPAQAKGPAHGLHA---------SHVLQPQL---------PPPLQP 146
Query: 168 KASADGHPGAFQTASPAPGTYPKSVSPASGLPAAFST-----------FEWMKVKRNASK 216
+A P + A PG +PA L A + + WMK K + S
Sbjct: 147 RAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMK-KIHVSA 205
Query: 217 KGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIW 276
Y P + RT ++ +Q+ ELEKEFHFN+YLTR RRIEIA+ L L++ QVKIW
Sbjct: 206 VNP--SYNGGEPKRS-RTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIW 262
Query: 277 FQNRRMKQKK 286
FQNRRMK KK
Sbjct: 263 FQNRRMKWKK 272
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 86.7 bits (213), Expect = 3e-17
Identities = 70/212 (33%), Positives = 93/212 (43%), Gaps = 42/212 (19%)
Query: 77 PAAPQYAQ-CTLEGAYEPGAAPAAAAGGADYGFLGSGPAYDFPGVLGRAADDGGSHVHYA 135
PA P+Y+Q T + +P P +A + G G +AD G +H+
Sbjct: 81 PAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSR 140
Query: 136 TSAVFSGGGSFLLSGQVDYAAFGEPGPFPACLKASADGHPGAFQTASPAPGTYPKSVSPA 195
+ G + D A E +ASA P SPAP
Sbjct: 141 EGVGTASGA------EEDAPASSE--------QASAQSEP------SPAP---------- 170
Query: 196 SGLPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSA-IRTNFSTKQLTELEKEFHFNKYL 254
PA + WM+ K ++ P RT ++ Q ELEKEFHFN+YL
Sbjct: 171 ---PAQPQIYPWMR-------KLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYL 220
Query: 255 TRARRIEIANCLHLNDTQVKIWFQNRRMKQKK 286
TR RRIEIA+ L L++ Q+KIWFQNRRMK KK
Sbjct: 221 TRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 252
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 85.1 bits (209), Expect = 8e-17
Identities = 58/174 (33%), Positives = 80/174 (45%), Gaps = 41/174 (23%)
Query: 158 GEPGPFPACLKASADGHPGAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKK 217
G P P A A+++ G + S P P + F WMK R SK
Sbjct: 88 GSPPPSAAPTSATSNSSNGGGPSKSGPP-----KCGPGTNSTLTKQIFPWMKESRQTSKL 142
Query: 218 -----------------------------------GKLAEYGAASPSSAIRTNFSTKQLT 242
G + G+A+ A RT +++ QL
Sbjct: 143 KNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRA-RTAYTSAQLV 201
Query: 243 ELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKREREGLLATA 296
ELEKEFHFN+YL R RR+E+AN L+L++ Q+KIWFQNRRMK KK ++ LA++
Sbjct: 202 ELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASS 255
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 84.0 bits (206), Expect = 2e-16
Identities = 76/255 (29%), Positives = 100/255 (39%), Gaps = 41/255 (16%)
Query: 61 PSPSPPAAPAR------PSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPA 114
P P+ PA+ P PPPA PQY + EP AP A G
Sbjct: 15 PGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGA----------- 63
Query: 115 YDFPGVLGRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGEPGPFPACLKASADGH 174
FP DD A G G + AFG P F G
Sbjct: 64 -PFPA----PKDDW---------AAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPG- 108
Query: 175 PGAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRT 234
PG PGT SP + P + +EWM R + G G R
Sbjct: 109 PGLLAQPLGGPGT---PSSPGAQRP---TPYEWM---RRSVAAGGGGGSGKTRTKDKYRV 159
Query: 235 NFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKREREGLLA 294
++ Q ELEKEFH+++Y+T R+ E+A L L + QVKIWFQNRR K++K ++
Sbjct: 160 VYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQ 219
Query: 295 TAIPVAPLQLPLSGT 309
P P+ ++ T
Sbjct: 220 QQPPQPPMAHDITAT 234
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 83.6 bits (205), Expect = 2e-16
Identities = 68/212 (32%), Positives = 90/212 (42%), Gaps = 35/212 (16%)
Query: 97 PAAAAGGADYGFLGSGPAYD---------FPGVLGRAADDGGSHVHYATSAVFS-GGGSF 146
P A G + FLG P Y +P G G +ATS+ + GG +
Sbjct: 11 PVTLASGQE-SFLGQLPLYSSGYADPLRHYPAPYGPGP---GQDKGFATSSYYPPAGGGY 66
Query: 147 LLSGQVDYAAFGEPGPFPA--------CLKASADGHPGAFQTASPAPGTYPKSV-SPASG 197
+ DY GP PA C + AD P + KSV
Sbjct: 67 GRAAPCDY------GPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEE 120
Query: 198 LPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRA 257
+ + WM+ + N+ G R ++ Q ELEKEFH+N+YLTR
Sbjct: 121 QKCSTPVYPWMQ-RMNSCNSSSFGPSGRRG-----RQTYTRYQTLELEKEFHYNRYLTRR 174
Query: 258 RRIEIANCLHLNDTQVKIWFQNRRMKQKKRER 289
RRIEIA+ L L + Q+KIWFQNRRMK KK +
Sbjct: 175 RRIEIAHALCLTERQIKIWFQNRRMKWKKESK 206
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 82.8 bits (203), Expect = 4e-16
Identities = 76/230 (33%), Positives = 98/230 (42%), Gaps = 56/230 (24%)
Query: 62 SPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAYDFPGVL 121
S SPPA PPP P L GA E G+ P + Y+ P +
Sbjct: 29 SASPPACLYMGRQPPPPPPHPFPGAL-GALEQGSPPDISP-------------YEVPPL- 73
Query: 122 GRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGEPGPFPACLKASADGHPGAFQTA 181
A D +H+H+ A + GPFP + A
Sbjct: 74 --ADDPAVAHLHHHLPAQLA-------------LPHPPAGPFP--------------EGA 104
Query: 182 SPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKKGKLAEYG-AASP--SSAIRTNFST 238
P P V LP F WMK + + KG+ A AA P + RT ++
Sbjct: 105 EPGVLEEPNRVQ----LP-----FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTR 155
Query: 239 KQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRE 288
QL ELEKEF FNKY++R RR+E+A L+L + +KIWFQNRRMK KK E
Sbjct: 156 AQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 205
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 82.8 bits (203), Expect = 4e-16
Identities = 47/100 (47%), Positives = 57/100 (57%), Gaps = 15/100 (15%)
Query: 200 AAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARR 259
A F + WM+ K+G R ++ Q ELEKEFHFN+YLTR RR
Sbjct: 115 ANFRIYPWMRSSGPDRKRG--------------RQTYTRYQTLELEKEFHFNRYLTRRRR 160
Query: 260 IEIANCLHLNDTQVKIWFQNRRMKQKKRER-EGLLATAIP 298
IEIA+ L L + Q+KIWFQNRRMK KK + EG A A P
Sbjct: 161 IEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAP 200
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 82.8 bits (203), Expect = 4e-16
Identities = 50/130 (38%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 160 PGPFPACLKASADGHPGAFQTASPAP---GTYPKSVSPASGLPAAFSTFEWMKVKRNASK 216
P P PA G ++SP P P SP+ + WM+ ++
Sbjct: 94 PAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTV 153
Query: 217 KGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIW 276
Y P + RT ++ +Q+ ELEKEFH+N+YLTR RR+EIA+ L L++ Q+KIW
Sbjct: 154 N---PNYAGGEPKRS-RTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIW 209
Query: 277 FQNRRMKQKK 286
FQNRRMK KK
Sbjct: 210 FQNRRMKWKK 219
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 81.6 bits (200), Expect = 9e-16
Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 10/121 (8%)
Query: 169 ASADGHPGAFQTASPAPG-TYPKSVSPASGLPAAFST--FEWMKVKRNASKKGKLAEYGA 225
AS++ A Q +SP+ P+ ++ ++ P + F WM+ K ++
Sbjct: 138 ASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMR-------KLHISHDMT 190
Query: 226 ASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQK 285
RT ++ Q ELEKEFHFN+YLTR RRIEIA+ L L++ Q+KIWFQNRRMK K
Sbjct: 191 GPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 250
Query: 286 K 286
K
Sbjct: 251 K 251
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 81.3 bits (199), Expect = 1e-15
Identities = 74/231 (32%), Positives = 92/231 (39%), Gaps = 42/231 (18%)
Query: 85 CTLEGAYEPGAAPAAAAGGAD-YGFLGSGPAYDFPGVLGRAADDGGSHVHYATSAVFSGG 143
C + GAY G +AAA GA G G+G PG G A GG+
Sbjct: 49 CLVGGAYTYGGGGSAAATGAGGAGAYGTGG----PGGPGGPAGGGGA----------CSM 94
Query: 144 GSFLLSGQVDYAAFGEPGPFPACLKASADGHPGAFQTAS--------PAPGTYPKSVSPA 195
G S V+ A G PGP + G GA A P G A
Sbjct: 95 GPLTGSYNVNMALAGGPGPGGG---GGSSGGAGALSAAGVIRVPAHRPLAGAVAHPQPLA 151
Query: 196 SGLPAAFS-------------TFEWMKVKRNASKK---GKLAEYGAASPSSAIRTNFSTK 239
+GLP S TF WM+ R +K G + RT+F+
Sbjct: 152 TGLPTVPSVPAMPGVNNLTGLTFPWMESNRRYTKDRFTGHPYQNRTPPKKKKPRTSFTRL 211
Query: 240 QLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRERE 290
Q+ ELEK FH KYL A R +A L + D QVK WFQNRR K +++ E
Sbjct: 212 QICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAE 262
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 81.3 bits (199), Expect = 1e-15
Identities = 46/87 (52%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 200 AAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARR 259
A+ + WM+ + S G YGA R +S Q ELEKEFHFN+YLTR RR
Sbjct: 36 ASIQIYPWMQRMNSHSGVG----YGADRRRG--RQIYSRYQTLELEKEFHFNRYLTRRRR 89
Query: 260 IEIANCLHLNDTQVKIWFQNRRMKQKK 286
IEIAN L L + Q+KIWFQNRRMK KK
Sbjct: 90 IEIANALCLTERQIKIWFQNRRMKWKK 116
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 81.3 bits (199), Expect = 1e-15
Identities = 46/87 (52%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 200 AAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARR 259
A+ + WM+ + S G YGA R +S Q ELEKEFHFN+YLTR RR
Sbjct: 118 ASIQIYPWMQRMNSHSGVG----YGADRRRG--RQIYSRYQTLELEKEFHFNRYLTRRRR 171
Query: 260 IEIANCLHLNDTQVKIWFQNRRMKQKK 286
IEIAN L L + Q+KIWFQNRRMK KK
Sbjct: 172 IEIANALCLTERQIKIWFQNRRMKWKK 198
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 80.5 bits (197), Expect = 2e-15
Identities = 78/275 (28%), Positives = 107/275 (38%), Gaps = 35/275 (12%)
Query: 74 VPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAYDFPGVLGRA--------A 125
V PP P Y G Y AA AAAA P +P G A
Sbjct: 32 VSPPQYPDY------GGYHVAAAAAAAANLDS----AQSPGPSWPAAYGAPLREDWNGYA 81
Query: 126 DDGGSHVHYATSAVFSGGGSFLLSGQ---VDYAAFGEPGPFPACLKASADGHPGAFQTAS 182
G + A + +GG G DY P P A+ G QT +
Sbjct: 82 PGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLN 141
Query: 183 PAPGTYPKSVSPASGLPAAF---STFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTK 239
P P P + + A L + EWM+ S L R ++
Sbjct: 142 PGPPG-PAATAAAEQLSPGGQRRNLCEWMRKPAQQS----LGSQVKTRTKDKYRVVYTDH 196
Query: 240 QLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKK------REREGLL 293
Q ELEKEFH+++Y+T R+ E+A L L++ QVKIWFQNRR K++K ++++
Sbjct: 197 QRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQ 256
Query: 294 ATAIPVAPLQLPLSGTTPTKFIKNPGSPSQSQEPS 328
P P Q P P + + P SP S + S
Sbjct: 257 PPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQAS 291
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 80.5 bits (197), Expect = 2e-15
Identities = 92/278 (33%), Positives = 116/278 (41%), Gaps = 56/278 (20%)
Query: 58 AARPSPSPPAAPA-----RPSVPPPAAPQYAQCTLEGAYE----------PGAAPAAAAG 102
+A PS PPAA A P VPPP P A + G Y PG A G
Sbjct: 80 SAVPS-QPPAAAAMSGLYHPYVPPP--PLAASASEPGRYVRSWMEPLPGFPGGAGGGGGG 136
Query: 103 GADYGFLGSGPAYDFPGVLGRAADDGGSHVHY----------ATSAVFSGGGSFLLSGQ- 151
G G G GP+ PG G A G H AT+A + S LS
Sbjct: 137 GG--GGPGRGPS---PGPSGPA---NGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSS 188
Query: 152 ------VDYAAFGEPGPFPACLK------ASADGHPGAFQTASPAPGTYPKSV-SPASGL 198
V + G GP +C A+A G G A GT S S S
Sbjct: 189 KRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDH 248
Query: 199 PAAFSTFEWMKVKRNASKKGKL------AEYGAASPSSAIRTNFSTKQLTELEKEFHFNK 252
P + + + + + ++ +L A + A + R ++ Q ELEKEF FN
Sbjct: 249 PIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNM 308
Query: 253 YLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRERE 290
YLTR RR E+A L+L + QVKIWFQNRRMK KK +E
Sbjct: 309 YLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKE 346
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 79.3 bits (194), Expect = 4e-15
Identities = 37/57 (64%), Positives = 43/57 (75%)
Query: 233 RTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRER 289
R ++ Q ELEKEFHFN+YLTR RRIEIAN L L + Q+KIWFQNRRMK KK +
Sbjct: 159 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,362,152
Number of Sequences: 37866
Number of extensions: 986322
Number of successful extensions: 11002
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 561
Number of HSP's that attempted gapping in prelim test: 7061
Number of HSP's gapped (non-prelim): 3507
length of query: 328
length of database: 18,247,518
effective HSP length: 103
effective length of query: 225
effective length of database: 14,347,320
effective search space: 3228147000
effective search space used: 3228147000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.