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Search of human proteins with 13273315
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13273315 homeobox B4 [Homo sapiens]
(251 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13273315 homeobox B4 [Homo sapiens] 545 e-155
gi|24497538 homeobox C4 [Homo sapiens] 280 8e-76
gi|24497540 homeobox C4 [Homo sapiens] 280 8e-76
gi|148613882 homeobox A4 [Homo sapiens] 259 2e-69
gi|23397672 homeobox D4 [Homo sapiens] 251 3e-67
gi|24497517 homeobox A5 [Homo sapiens] 159 2e-39
gi|4504469 homeobox B5 [Homo sapiens] 146 1e-35
gi|24497513 homeobox A3 isoform a [Homo sapiens] 143 2e-34
gi|13562112 homeobox A3 isoform a [Homo sapiens] 143 2e-34
gi|11321638 homeobox C5 [Homo sapiens] 134 7e-32
gi|23503237 homeobox B6 [Homo sapiens] 134 7e-32
gi|15029506 homeobox D8 [Homo sapiens] 125 3e-29
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 124 6e-29
gi|24497556 homeobox A7 [Homo sapiens] 122 2e-28
gi|13489077 homeobox A6 [Homo sapiens] 122 3e-28
gi|19923391 homeobox D3 [Homo sapiens] 121 7e-28
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 120 1e-27
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 120 1e-27
gi|85068580 homeobox B7 [Homo sapiens] 120 1e-27
gi|84570137 homeobox B3 [Homo sapiens] 115 4e-26
gi|4504465 homeobox B2 [Homo sapiens] 111 7e-25
gi|121114296 caudal type homeobox 1 [Homo sapiens] 106 2e-23
gi|13273317 homeobox B8 [Homo sapiens] 100 9e-22
gi|24497515 homeobox A3 isoform b [Homo sapiens] 100 1e-21
gi|33457326 GS homeobox 1 [Homo sapiens] 100 1e-21
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 97 1e-20
gi|10140847 homeobox A2 [Homo sapiens] 97 1e-20
gi|12056969 homeobox C8 [Homo sapiens] 96 4e-20
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 95 5e-20
gi|24497526 homeobox B1 [Homo sapiens] 94 9e-20
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 545 bits (1404), Expect = e-155
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC 60
MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
Sbjct: 1 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC 60
Query: 61 TVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPP 120
TVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPP
Sbjct: 61 TVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPP 120
Query: 121 PCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKE 180
PCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKE
Sbjct: 121 PCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKE 180
Query: 181 FHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGP 240
FHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGP
Sbjct: 181 FHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGP 240
Query: 241 PGRPNGGPRAL 251
PGRPNGGPRAL
Sbjct: 241 PGRPNGGPRAL 251
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 280 bits (716), Expect = 8e-76
Identities = 151/252 (59%), Positives = 173/252 (68%), Gaps = 36/252 (14%)
Query: 1 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC 60
M MSS+L++SNY+DPKFPPCEEYSQ+ Y+P +HSP YY G+ RES FQ
Sbjct: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIP-EHSPEYY--GRTRESGFQHHH-------- 49
Query: 61 TVQRYAACRDPGPPPPPPPPPPPPP-------PPGLSPRAPAPPPAGALLPEPGQR-CE- 111
++ PPPPP P P PG S R P AG PE Q CE
Sbjct: 50 --------QELYPPPPPRPSYPERQYSCTSLQGPGNS-RGHGPAQAGHHHPEKSQSLCEP 100
Query: 112 ------AVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRS 165
+ S SP PP C+Q P PS +A K+P+VYPWM+K+HVSTVNPNY GGEPKRS
Sbjct: 101 APLSGASASPSPAPPACSQ-PAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRS 159
Query: 166 RTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPN 225
RTAYTRQQVLELEKEFHYNRYLTRRRR+EIAH+LCLSERQIKIWFQNRRMKWKKDH+LPN
Sbjct: 160 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 219
Query: 226 TKIRSGGAAGSA 237
TK+RS AG+A
Sbjct: 220 TKVRSAPPAGAA 231
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 280 bits (716), Expect = 8e-76
Identities = 151/252 (59%), Positives = 173/252 (68%), Gaps = 36/252 (14%)
Query: 1 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC 60
M MSS+L++SNY+DPKFPPCEEYSQ+ Y+P +HSP YY G+ RES FQ
Sbjct: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIP-EHSPEYY--GRTRESGFQHHH-------- 49
Query: 61 TVQRYAACRDPGPPPPPPPPPPPPP-------PPGLSPRAPAPPPAGALLPEPGQR-CE- 111
++ PPPPP P P PG S R P AG PE Q CE
Sbjct: 50 --------QELYPPPPPRPSYPERQYSCTSLQGPGNS-RGHGPAQAGHHHPEKSQSLCEP 100
Query: 112 ------AVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRS 165
+ S SP PP C+Q P PS +A K+P+VYPWM+K+HVSTVNPNY GGEPKRS
Sbjct: 101 APLSGASASPSPAPPACSQ-PAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRS 159
Query: 166 RTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPN 225
RTAYTRQQVLELEKEFHYNRYLTRRRR+EIAH+LCLSERQIKIWFQNRRMKWKKDH+LPN
Sbjct: 160 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 219
Query: 226 TKIRSGGAAGSA 237
TK+RS AG+A
Sbjct: 220 TKVRSAPPAGAA 231
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 259 bits (661), Expect = 2e-69
Identities = 144/296 (48%), Positives = 167/296 (56%), Gaps = 53/296 (17%)
Query: 1 MAMSSFLINSNYVDPKFPPCEEYSQSDYL-------------------PSDHSP------ 35
M MSSFLINSNY++PKFPP EEY+Q P+ H P
Sbjct: 1 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL 60
Query: 36 -----------GYYAGGQRRESSFQPEAGFGRRAACTVQR---YAACRDPGPPPPPPPPP 81
YYA RE ++ A + A Y PG PP P PP
Sbjct: 61 PHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP 120
Query: 82 PPPPPPG--------LSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHP---- 129
P L P+ P P A+ P +RCEA ++P P P P
Sbjct: 121 AQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA 180
Query: 130 --SPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYL 187
SP KEPVVYPWM+K+HVS VNP+Y GGEPKRSRTAYTRQQVLELEKEFH+NRYL
Sbjct: 181 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL 240
Query: 188 TRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGR 243
TRRRR+EIAH LCLSERQ+KIWFQNRRMKWKKDHKLPNTK+RS +A ++ GPPG+
Sbjct: 241 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGK 296
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 251 bits (642), Expect = 3e-67
Identities = 140/250 (56%), Positives = 158/250 (63%), Gaps = 34/250 (13%)
Query: 1 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQ------------RRESSF 48
M MSS+++NS YVDPKFPPCEEY Q YL + YY GG R +
Sbjct: 1 MVMSSYMVNSKYVDPKFPPCEEYLQGGYL-GEQGADYYGGGAQGADFQPPGLYPRPDFGE 59
Query: 49 QPEAGFGRRAACTVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQ 108
QP G G + ++PG P P P P PAPPPA P PG
Sbjct: 60 QPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEP-----CPAPPAPPPA----PLPGA 110
Query: 109 RCEAVSSSPPPPPCAQNPLHPSPSHSACKEP-VVYPWMRKVHVSTVNPNYAGGEPKRSRT 167
R A S S P P PS +A K+P VVYPWM+KVHV++VNPNY GGEPKRSRT
Sbjct: 111 R--AYSQSDPKQP---------PSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRT 159
Query: 168 AYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTK 227
AYTRQQVLELEKEFH+NRYLTRRRR+EIAH LCLSERQIKIWFQNRRMKWKKDHKLPNTK
Sbjct: 160 AYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTK 219
Query: 228 IRSGGAAGSA 237
RS ++ S+
Sbjct: 220 GRSSSSSSSS 229
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 159 bits (402), Expect = 2e-39
Identities = 97/226 (42%), Positives = 121/226 (53%), Gaps = 21/226 (9%)
Query: 23 YSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAACTVQRYA--ACRDPGPPPPPPPP 80
Y+ D G++ G+R S + AA RY+ A P P P P
Sbjct: 49 YNGMDLSVGRSGSGHFGSGERARSYAASAS-----AAPAEPRYSQPATSTHSPQPDPLPC 103
Query: 81 PPPPPPPG----------LSPRAPAPPPAGA--LLPEPGQRCEAVSSSPPPPPCAQNPLH 128
P PG LS + A AG+ + G + + P Q
Sbjct: 104 SAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQ 163
Query: 129 PSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLT 188
PS + +P +YPWMRK+H+S + N G E KR+RTAYTR Q LELEKEFH+NRYLT
Sbjct: 164 SEPSPAPPAQPQIYPWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLT 221
Query: 189 RRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAA 234
RRRR+EIAHALCLSERQIKIWFQNRRMKWKKD+KL + + + G A
Sbjct: 222 RRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGA 267
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 146 bits (369), Expect = 1e-35
Identities = 71/120 (59%), Positives = 88/120 (73%), Gaps = 3/120 (2%)
Query: 115 SSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQV 174
SSP P+ S + + P ++PWMRK+H+S + G + KR+RTAYTR Q
Sbjct: 150 SSPSLARAQPEPMATSTAAPEGQTPQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQT 206
Query: 175 LELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAA 234
LELEKEFH+NRYLTRRRR+EIAHALCLSERQIKIWFQNRRMKWKKD+KL + + + G+A
Sbjct: 207 LELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 143 bits (360), Expect = 2e-34
Identities = 85/188 (45%), Positives = 109/188 (57%), Gaps = 20/188 (10%)
Query: 71 PGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHPS 130
P PPPP PP P PP +P+ PAP PA P + S++P P A++PL S
Sbjct: 89 PLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNS 148
Query: 131 PSHSACKEPVVYPWMR--------KVHVSTVNPNYAGGEP-------KRSRTAYTRQQVL 175
P+ K+ ++PWM+ K S+ + AG + KR+RTAYT Q++
Sbjct: 149 PT--VAKQ--IFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLV 204
Query: 176 ELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAG 235
ELEKEFH+NRYL R RRVE+A+ L L+ERQIKIWFQNRRMK+KKD K SGG +
Sbjct: 205 ELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSP 264
Query: 236 SAGG-PPG 242
S PPG
Sbjct: 265 SRSPVPPG 272
Score = 31.2 bits (69), Expect = 0.89
Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 73 PPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPP 121
P P PPP PP G PA PA LP S +PPPPP
Sbjct: 288 PYEPQSPPPFSKPPQGTYGLPPASYPAS--LP---------SCAPPPPP 325
Score = 28.1 bits (61), Expect = 7.6
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 73 PPPPPPPPPPPPPPPGLSPRA-PAPPPAGALLPEPGQRCEAVSSSPPPPP 121
P PPP PP GL P + PA P+ A P P +R A + P
Sbjct: 291 PQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTP 340
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 143 bits (360), Expect = 2e-34
Identities = 85/188 (45%), Positives = 109/188 (57%), Gaps = 20/188 (10%)
Query: 71 PGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHPS 130
P PPPP PP P PP +P+ PAP PA P + S++P P A++PL S
Sbjct: 89 PLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNS 148
Query: 131 PSHSACKEPVVYPWMR--------KVHVSTVNPNYAGGEP-------KRSRTAYTRQQVL 175
P+ K+ ++PWM+ K S+ + AG + KR+RTAYT Q++
Sbjct: 149 PT--VAKQ--IFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLV 204
Query: 176 ELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAG 235
ELEKEFH+NRYL R RRVE+A+ L L+ERQIKIWFQNRRMK+KKD K SGG +
Sbjct: 205 ELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSP 264
Query: 236 SAGG-PPG 242
S PPG
Sbjct: 265 SRSPVPPG 272
Score = 31.2 bits (69), Expect = 0.89
Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 73 PPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPP 121
P P PPP PP G PA PA LP S +PPPPP
Sbjct: 288 PYEPQSPPPFSKPPQGTYGLPPASYPAS--LP---------SCAPPPPP 325
Score = 28.1 bits (61), Expect = 7.6
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 73 PPPPPPPPPPPPPPPGLSPRA-PAPPPAGALLPEPGQRCEAVSSSPPPPP 121
P PPP PP GL P + PA P+ A P P +R A + P
Sbjct: 291 PQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTP 340
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 134 bits (337), Expect = 7e-32
Identities = 94/245 (38%), Positives = 116/245 (47%), Gaps = 53/245 (21%)
Query: 3 MSSFLINSNYVD-PKFPP-----CEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGR 56
MSS++ NS Y P P C Y + + + Y GG +F P A
Sbjct: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASR---YCYGGLDLSITFPPPAPSNS 57
Query: 57 ---------------RAACTVQR---YAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPP 98
R AC+ +A RD P P P L RA +
Sbjct: 58 LHGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKS--- 114
Query: 99 AGALLPEPGQRCEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYA 158
+G + E Q + S PP P P +YPWM K+H+S
Sbjct: 115 SGEIKEEQAQTGQPAGLSQPPAP-----------------PQIYPWMTKLHMSHET---- 153
Query: 159 GGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWK 218
+ KRSRT+YTR Q LELEKEFH+NRYLTRRRR+EIA+ LCL+ERQIKIWFQNRRMKWK
Sbjct: 154 --DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWK 211
Query: 219 KDHKL 223
KD K+
Sbjct: 212 KDSKM 216
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 134 bits (337), Expect = 7e-32
Identities = 79/176 (44%), Positives = 93/176 (52%), Gaps = 24/176 (13%)
Query: 70 DPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALL--------PEPGQRCEAVSSSPPPPP 121
DP P P P P G + + PP G P P E S+
Sbjct: 34 DPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGA 93
Query: 122 CAQNPLHPSPSHSACKEPV--------------VYPWMRKVHVSTVNPNYAGGEPKRSRT 167
Q P HP P S C + VYPWM++++ + N + G +R R
Sbjct: 94 DEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQ 151
Query: 168 AYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKL 223
YTR Q LELEKEFHYNRYLTRRRR+EIAHALCL+ERQIKIWFQNRRMKWKK+ KL
Sbjct: 152 TYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKL 207
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 125 bits (315), Expect = 3e-29
Identities = 84/218 (38%), Positives = 110/218 (50%), Gaps = 35/218 (16%)
Query: 17 FPPCEEYSQSDYLPSDHSPGYYAGGQ--RRESSFQPEAGFGRRAACTVQRYAACRDPGPP 74
FP + + PS G GG+ R + F P G AA PP
Sbjct: 61 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSP----------AAAYQAAPP 110
Query: 75 PPPPPPPPPPPPP--GLSPRAPAPPPAGA--LLPEPGQRCEAVSSSPPPPPC-------A 123
PPP PPPPPPPPP G++ G L +P + + P C
Sbjct: 111 PPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIG 170
Query: 124 QNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHY 183
++P H + S S + ++PWMR P A G +R R Y+R Q LELEKEF +
Sbjct: 171 EDPDHLNQSSSPSQ---MFPWMR--------PQAAPGR-RRGRQTYSRFQTLELEKEFLF 218
Query: 184 NRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDH 221
N YLTR+RR+E++HAL L+ERQ+KIWFQNRRMKWKK++
Sbjct: 219 NPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 124 bits (312), Expect = 6e-29
Identities = 79/193 (40%), Positives = 96/193 (49%), Gaps = 27/193 (13%)
Query: 67 ACRDPGPPPPPPPPPPPP---------PPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSP 117
AC G PPPPPP P P PP +SP P + A + P
Sbjct: 34 ACLYMGRQPPPPPPHPFPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALP 93
Query: 118 PPPPCAQNPLHPSPSHSACKEP----VVYPWMRKVHVSTVNPNYAGG-------EPKRSR 166
PP P +EP + +PWM+ +AGG E KR+R
Sbjct: 94 HPPA---GPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTR 150
Query: 167 TAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNT 226
TAYTR Q+LELEKEF +N+Y++R RRVE+A L L+ER IKIWFQNRRMKWKK+
Sbjct: 151 TAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE----ED 206
Query: 227 KIRSGGAAGSAGG 239
K R GG A GG
Sbjct: 207 KKRGGGTAVGGGG 219
Score = 31.6 bits (70), Expect = 0.68
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 80 PPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCA-QNPLHP 129
PPPPPP + P AP G L P +S+SP P A + P P
Sbjct: 239 PPPPPPGGAVPPAAPVAAREGRLPP-------GLSASPQPSSVAPRRPQEP 282
Score = 30.8 bits (68), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 74 PPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEP 106
PPPPPP PP ++ R PP + P+P
Sbjct: 239 PPPPPPGGAVPPAAPVAAREGRLPPGLSASPQP 271
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 122 bits (307), Expect = 2e-28
Identities = 57/82 (69%), Positives = 64/82 (78%), Gaps = 10/82 (12%)
Query: 141 VYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALC 200
+YPWMR +G + KR R YTR Q LELEKEFH+NRYLTRRRR+EIAHALC
Sbjct: 119 IYPWMRS----------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 168
Query: 201 LSERQIKIWFQNRRMKWKKDHK 222
L+ERQIKIWFQNRRMKWKK+HK
Sbjct: 169 LTERQIKIWFQNRRMKWKKEHK 190
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 122 bits (306), Expect = 3e-28
Identities = 61/99 (61%), Positives = 75/99 (75%), Gaps = 2/99 (2%)
Query: 141 VYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALC 200
VYPWM++++ S Y G +R R YTR Q LELEKEFH+NRYLTRRRR+EIA+ALC
Sbjct: 136 VYPWMQRMN-SCAGAVY-GSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALC 193
Query: 201 LSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGG 239
L+ERQIKIWFQNRRMKWKK++KL N+ SG + + G
Sbjct: 194 LTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAG 232
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 121 bits (303), Expect = 7e-28
Identities = 77/189 (40%), Positives = 92/189 (48%), Gaps = 42/189 (22%)
Query: 71 PGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHPS 130
PG PP PPPPPP L P +P P G +P A SS
Sbjct: 108 PGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSS--------------- 152
Query: 131 PSHSACKEPVVYPWMRKVHVSTVNPNYA-------------GGEPKRSRTAYTRQQVLEL 177
SA ++PWM++ ++ N G KR RTAYT Q++EL
Sbjct: 153 ---SATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVEL 209
Query: 178 EKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKL-----------PNT 226
EKEFH+NRYL R RRVE+A+ L L+ERQIKIWFQNRRMK+KKD K P
Sbjct: 210 EKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPER 269
Query: 227 KIRSGGAAG 235
GGAAG
Sbjct: 270 SPPLGGAAG 278
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 120 bits (301), Expect = 1e-27
Identities = 61/101 (60%), Positives = 75/101 (74%), Gaps = 4/101 (3%)
Query: 141 VYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALC 200
+YPWM++++ S Y G + +R R Y+R Q LELEKEFH+NRYLTRRRR+EIA+ALC
Sbjct: 40 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 97
Query: 201 LSERQIKIWFQNRRMKWKKDHKLPNTKIRSGG--AAGSAGG 239
L+ERQIKIWFQNRRMKWKK+ L +T GG A S GG
Sbjct: 98 LTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGG 138
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 120 bits (301), Expect = 1e-27
Identities = 61/101 (60%), Positives = 75/101 (74%), Gaps = 4/101 (3%)
Query: 141 VYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALC 200
+YPWM++++ S Y G + +R R Y+R Q LELEKEFH+NRYLTRRRR+EIA+ALC
Sbjct: 122 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 179
Query: 201 LSERQIKIWFQNRRMKWKKDHKLPNTKIRSGG--AAGSAGG 239
L+ERQIKIWFQNRRMKWKK+ L +T GG A S GG
Sbjct: 180 LTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGG 220
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 120 bits (300), Expect = 1e-27
Identities = 56/82 (68%), Positives = 63/82 (76%), Gaps = 10/82 (12%)
Query: 141 VYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALC 200
+YPWMR +G + KR R YTR Q LELEKEFHYNRYLTRRRR+EIAH LC
Sbjct: 126 IYPWMRS----------SGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLC 175
Query: 201 LSERQIKIWFQNRRMKWKKDHK 222
L+ERQIKIWFQNRRMKWKK++K
Sbjct: 176 LTERQIKIWFQNRRMKWKKENK 197
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 115 bits (288), Expect = 4e-26
Identities = 86/262 (32%), Positives = 114/262 (43%), Gaps = 65/262 (24%)
Query: 18 PPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAACTVQRYAACRDPGPPPPP 77
PP + + +L D+ QR S Q G A + + +C PG P P
Sbjct: 32 PPQPPFQAATHLEGDY--------QRSACSLQ-SLGNAAPHAKSKELNGSCMRPGLAPEP 82
Query: 78 PPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHPSPSHSACK 137
PP PPP +P + + P S PP C P + + K
Sbjct: 83 LSAPPGSPPPSAAPTSATSNSSNGGGP----------SKSGPPKCG-----PGTNSTLTK 127
Query: 138 EPVVYPWMRKVHVSTVNPNYAGGEP----------------------------------- 162
+ ++PWM++ ++ N + G
Sbjct: 128 Q--IFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGS 185
Query: 163 ---KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 219
KR+RTAYT Q++ELEKEFH+NRYL R RRVE+A+ L LSERQIKIWFQNRRMK+KK
Sbjct: 186 AASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK 245
Query: 220 DHKLPNTKIRSGGAAGSAGGPP 241
D K SGG + AG PP
Sbjct: 246 DQKAKGLASSSGGPS-PAGSPP 266
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 111 bits (277), Expect = 7e-25
Identities = 81/198 (40%), Positives = 101/198 (51%), Gaps = 26/198 (13%)
Query: 59 ACTVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPP 118
A T+QR + + P PPPPPPP PA PPA PE E S+ P
Sbjct: 60 ASTLQRPRSQKRAEDGPALPPPPPPP--------LPAAPPA----PEFPWMKEKKSAKKP 107
Query: 119 PPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELE 178
+Q+ PSP+ SA V + + P GG +R RTAYT Q+LELE
Sbjct: 108 ----SQSATSPSPAASAVPASGVGSPADGLGL----PEAGGGGARRLRTAYTNTQLLELE 159
Query: 179 KEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKD---HKLPNTKIRSGGAAG 235
KEFH+N+YL R RRVEIA L L+ERQ+K+WFQNRRMK K+ + P+ + GA
Sbjct: 160 KEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALE 219
Query: 236 SAGGP---PGRPNGGPRA 250
P P GGP A
Sbjct: 220 DICDPAEEPAASPGGPSA 237
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 106 bits (265), Expect = 2e-23
Identities = 76/188 (40%), Positives = 92/188 (48%), Gaps = 41/188 (21%)
Query: 72 GPPPPPPPPPPPPPPPGLS--PRAPAPPPA-GALLPEP--------GQRCEAVSSSP--- 117
GPP PPP PP P S APAPP A GA P P G A ++SP
Sbjct: 31 GPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASL 90
Query: 118 ---PPPPCAQNPLHP---------------SPSHSACKEPVVYPWMRKVHVSTVNPNYAG 159
PPP + P P +PS + P Y WMR+ +V G
Sbjct: 91 AFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRR----SVAAGGGG 146
Query: 160 GEPK-----RSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRR 214
G K + R YT Q LELEKEFHY+RY+T RR+ E+A L L+ERQ+KIWFQNRR
Sbjct: 147 GSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRR 206
Query: 215 MKWKKDHK 222
K +K +K
Sbjct: 207 AKERKVNK 214
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 100 bits (250), Expect = 9e-22
Identities = 53/102 (51%), Positives = 69/102 (67%), Gaps = 19/102 (18%)
Query: 129 PSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLT 188
PSP+ ++PWMR P A G +R R Y+R Q LELEKEF +N YLT
Sbjct: 129 PSPTQ-------LFPWMR--------PQAAAGR-RRGRQTYSRYQTLELEKEFLFNPYLT 172
Query: 189 RRRRVEIAHALCLSERQIKIWFQNRRMKWKKDH---KLPNTK 227
R+RR+E++HAL L+ERQ+KIWFQNRRMKWKK++ K P++K
Sbjct: 173 RKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSK 214
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 100 bits (249), Expect = 1e-21
Identities = 52/81 (64%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
Query: 163 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHK 222
KR+RTAYT Q++ELEKEFH+NRYL R RRVE+A+ L L+ERQIKIWFQNRRMK+KKD K
Sbjct: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
Query: 223 LPNTKIRSGGAAGSAGG-PPG 242
SGG + S PPG
Sbjct: 94 GKGMLTSSGGQSPSRSPVPPG 114
Score = 31.2 bits (69), Expect = 0.89
Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 73 PPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPP 121
P P PPP PP G PA PA LP S +PPPPP
Sbjct: 130 PYEPQSPPPFSKPPQGTYGLPPASYPAS--LP---------SCAPPPPP 167
Score = 28.1 bits (61), Expect = 7.6
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 73 PPPPPPPPPPPPPPPGLSPRA-PAPPPAGALLPEPGQRCEAVSSSPPPPP 121
P PPP PP GL P + PA P+ A P P +R A + P
Sbjct: 133 PQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTP 182
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 100 bits (249), Expect = 1e-21
Identities = 79/209 (37%), Positives = 97/209 (46%), Gaps = 37/209 (17%)
Query: 72 GPPPP--PPPPPPPPPPPGLSPRA-----------------------PAPPPAGALL--- 103
G PPP P PPP GLSP A P PPA LL
Sbjct: 23 GSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKAS 82
Query: 104 --PEPGQRCEAV---SSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVH-VSTVNPNY 157
P Q C A S P A P + + + + P R+ H +S + +
Sbjct: 83 FPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSN 142
Query: 158 AGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKW 217
KR RTA+T Q+LELE+EF N YL+R RR+EIA L LSE+Q+KIWFQNRR+K
Sbjct: 143 QLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKH 202
Query: 218 KKDHKLPNTKIRSGGAAGSAGGPPGRPNG 246
KK+ K N + GG G AGG P G
Sbjct: 203 KKEGKGSNHR---GGGGGGAGGGGSAPQG 228
Score = 98.6 bits (244), Expect = 5e-21
Identities = 77/206 (37%), Positives = 95/206 (46%), Gaps = 35/206 (16%)
Query: 71 PGPPPPPPPP---PPPPPPPGLSPRA-----------------------PAPPPAGALL- 103
P PPP P PPP GLSP A P PPA LL
Sbjct: 21 PEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLK 80
Query: 104 ----PEPGQRCEAV---SSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVH-VSTVNP 155
P Q C A S P A P + + + + P R+ H +S +
Sbjct: 81 ASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSS 140
Query: 156 NYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRM 215
+ KR RTA+T Q+LELE+EF N YL+R RR+EIA L LSE+Q+KIWFQNRR+
Sbjct: 141 SNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRV 200
Query: 216 KWKKDHKLPNTKIRSGGAAGSAGGPP 241
K KK+ K N + GG AG G P
Sbjct: 201 KHKKEGKGSNHRGGGGGGAGGGGSAP 226
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 97.4 bits (241), Expect = 1e-20
Identities = 65/195 (33%), Positives = 85/195 (43%), Gaps = 53/195 (27%)
Query: 81 PPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPP---------------------- 118
PPPPPPP S P+ P G + ++ EA + P
Sbjct: 163 PPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSS 222
Query: 119 ---------PPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAY 169
P P + L A PV T GG+ +R RTA+
Sbjct: 223 AGGPGALLGPKPKLKGSLGTGAEEGA---PV-----------TAGVTAPGGKSRRRRTAF 268
Query: 170 TRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIR 229
T +Q+LELEKEFH +YL+ R +IAHAL LSE Q+KIWFQNRR KWK +I+
Sbjct: 269 TSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK--------RIK 320
Query: 230 SGGAAGSAGGPPGRP 244
+G + +G P P
Sbjct: 321 AGNVSSRSGEPVRNP 335
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 97.1 bits (240), Expect = 1e-20
Identities = 63/160 (39%), Positives = 82/160 (51%), Gaps = 23/160 (14%)
Query: 75 PPPPPPPPPPPPPGLSPR-----APAPPPAGALLPEPGQRCEAVSSSPPPPPCAQN---- 125
PPP P PG PR P P PAG+ G A + PP P +
Sbjct: 49 PPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSR----GSPVPAGALQPPEYPWMKEKKAA 104
Query: 126 ------PLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEK 179
P + + +A P + ++ + +GG +R RTAYT Q+LELEK
Sbjct: 105 KKTALLPAAAAAATAAATGPACLSHKESLEIA----DGSGGGSRRLRTAYTNTQLLELEK 160
Query: 180 EFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 219
EFH+N+YL R RRVEIA L L+ERQ+K+WFQNRRMK K+
Sbjct: 161 EFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 95.5 bits (236), Expect = 4e-20
Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 13/91 (14%)
Query: 140 VVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHAL 199
+++PWMR +A G + R Y+R Q LELEKEF +N YLTR+RR+E++HAL
Sbjct: 137 LMFPWMRP---------HAPGR-RSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHAL 186
Query: 200 CLSERQIKIWFQNRRMKWKKDH---KLPNTK 227
L+ERQ+KIWFQNRRMKWKK++ KLP +
Sbjct: 187 GLTERQVKIWFQNRRMKWKKENNKDKLPGAR 217
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 95.1 bits (235), Expect = 5e-20
Identities = 68/206 (33%), Positives = 93/206 (45%), Gaps = 40/206 (19%)
Query: 45 ESSFQPEAGFGRRAACTVQR--YAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGAL 102
+ +F+P G CT + +A R PP PP PP P SP AP PP A
Sbjct: 10 DRAFRPR---GATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGPPGGAAA 66
Query: 103 LPEPGQRCEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEP 162
PG ++P A P + G+P
Sbjct: 67 ---PG----GAGTTPQGTATAAKPKRKRTGSDS----------------------KSGKP 97
Query: 163 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHK 222
+R+RTA+T +Q++ LE +F RYL+ R+ +A +L L+E Q+KIWFQNRR KWKK +
Sbjct: 98 RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 157
Query: 223 LPNTKIRSGGAAGSAGGPPGRPNGGP 248
+T +GG GG PG P GP
Sbjct: 158 GADTSAPTGG-----GGGPG-PGAGP 177
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 94.4 bits (233), Expect = 9e-20
Identities = 84/258 (32%), Positives = 110/258 (42%), Gaps = 47/258 (18%)
Query: 1 MAMSSFLINSNYVDPKFP-----PCEEYSQSDYLPSDHSPGY-----YAGGQRR-ESSFQ 49
++ +F NS Y + P P + S Y P+ SP Y Y GQ + +
Sbjct: 52 LSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYF 111
Query: 50 PEAGFGRRAACTVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQR 109
+ +G + Y A P P PP PP G A P LL E +
Sbjct: 112 HPSSYGAQLGGLSDGYGA-----GGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKET 166
Query: 110 CEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMR--KVHVSTVNPNYAG-GEPKRSR 166
PC P P+ + WM+ + T + G G P R
Sbjct: 167 -----------PCPSEPNTPTAR--------TFDWMKVKRNPPKTAKVSEPGLGSPSGLR 207
Query: 167 TAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNT 226
T +T +Q+ ELEKEFH+N+YL+R RRVEIA L L+E Q+KIWFQNRRMK KK
Sbjct: 208 TNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK------- 260
Query: 227 KIRSGGAAGSAGGPPGRP 244
+ R G A PPG P
Sbjct: 261 REREEGRVPPA--PPGCP 276
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,596,471
Number of Sequences: 37866
Number of extensions: 1592001
Number of successful extensions: 72000
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2094
Number of HSP's successfully gapped in prelim test: 1077
Number of HSP's that attempted gapping in prelim test: 13867
Number of HSP's gapped (non-prelim): 22993
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.