Guide to the Human Genome
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Name: EIF2S1 Sequence: fasta or formatted (315aa) NCBI GI: 4758256
Description:

eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa

Referenced in:

Additional Serine / Threonine Protein Kinases
Translation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         22           1
 C cysteine            1.6          5           1
 D aspartate           6.7         21           3
 E glutamate          12.1         38           2
 F phenylalanine       2.2          7           1
 G glycine             4.1         13           1
 H histidine           1.0          3           1
 I isoleucine          7.0         22           1
 K lysine              6.7         21           1
 L leucine             7.9         25           2
 M methionine          3.2         10           1
 N asparagine          4.4         14           2
 P proline             3.2         10           2
 Q glutamine           2.2          7           1
 R arginine            7.9         25           3
 S serine              5.4         17           1
 T threonine           4.4         14           4
 V valine              8.9         28           3
 W tryptophan          0.3          1           1
 Y tyrosine            3.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic translation initiation factor 2, subunit 1... 
PBRM1                 0.019   polybromo 1 isoform 1 
PBRM1                 0.019   polybromo 1 isoform 2 
PBRM1                 0.019   polybromo 1 isoform 4 
NEFH                  0.013   neurofilament, heavy polypeptide 200kDa 
CGN                   0.013   cingulin 
TNNT2                 0.010   troponin T type 2, cardiac isoform 1 
KIAA0947              0.008   hypothetical protein LOC23379 
CHD2                  0.008   chromodomain helicase DNA binding protein 2 isoform...
PCDP1                 0.008   primary ciliary dyskinesia protein 1 
SGPP2                 0.007   sphingosine-1-phosphate phosphotase 2 
PDCD11                0.007   programmed cell death 11 
NPTXR                 0.007   neuronal pentraxin receptor 
NOP14                 0.007   probable nucleolar complex protein 14 
MFAP1                 0.007   microfibrillar-associated protein 1 
CASD1                 0.007   CAS1 domain containing 1 
BAT2D1                0.007   HBxAg transactivated protein 2 
APP                   0.005   amyloid beta A4 protein isoform c precursor 
APP                   0.005   amyloid beta A4 protein isoform b precursor 
APP                   0.005   amyloid beta A4 protein isoform a precursor 
APP                   0.005   amyloid beta A4 protein isoform e precursor 
APP                   0.005   amyloid beta A4 protein isoform f precursor 
SYTL2                 0.005   synaptotagmin-like 2 isoform d 
SYTL2                 0.005   synaptotagmin-like 2 isoform c 
INA                   0.005   internexin neuronal intermediate filament protein, a...
IMPDH1                0.005   inosine monophosphate dehydrogenase 1 isoform c [Ho...
IMPDH1                0.005   inosine monophosphate dehydrogenase 1 isoform b [Hom...
IMPDH1                0.005   inosine monophosphate dehydrogenase 1 isoform a [Hom...
IMPDH1                0.005   inosine monophosphate dehydrogenase 1 isoform d [Ho...
IMPDH1                0.005   inosine monophosphate dehydrogenase 1 isoform g [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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