PBRM1 27705

Name: PBRM1	Sequence: fasta or formatted (1582aa)		NCBI GI: 41281917
Description: polybromo 1 isoform 4		Referenced in: Bromodomain Family Nonhistone Chromosomal Proteins
Other entries for this name: alt prot [1602aa] polybromo 1 isoform 1 alt prot [1582aa] polybromo 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 92 3 C cysteine 1.4 22 1 D aspartate 6.4 102 4 E glutamate 9.0 143 3 F phenylalanine 3.4 53 2 G glycine 4.5 71 2 H histidine 2.2 35 2 I isoleucine 4.8 76 2 K lysine 8.8 140 3 L leucine 8.8 140 2 M methionine 3.1 49 2 N asparagine 4.4 69 2 P proline 6.1 97 3 Q glutamine 3.7 59 2 R arginine 5.9 94 3 S serine 7.5 118 3 T threonine 3.5 55 2 V valine 5.2 82 2 W tryptophan 0.7 11 1 Y tyrosine 4.7 74 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 polybromo 1 isoform 4 PBRM1 0.966 polybromo 1 isoform 1 PBRM1 0.948 polybromo 1 isoform 2 SMARCA4 0.025 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.025 SWI/SNF-related matrix-associated actin-dependent r... SMARCA2 0.024 SWI/SNF-related matrix-associated actin-dependent re... SMARCA4 0.023 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.023 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.023 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.023 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.023 SWI/SNF-related matrix-associated actin-dependent re... BRDT 0.022 testis-specific bromodomain protein BRDT 0.022 testis-specific bromodomain protein SMARCA2 0.020 SWI/SNF-related matrix-associated actin-dependent re... ASH1L 0.019 absent, small, or homeotic 1-like TAF1 0.019 TBP-associated factor 1 isoform 2 TAF1 0.019 TBP-associated factor 1 isoform 1 TAF1L 0.018 TBP-associated factor RNA polymerase 1-like BRWD1 0.016 bromodomain and WD repeat domain containing 1 isofor... BRWD1 0.016 bromodomain and WD repeat domain containing 1 isofor... PHIP 0.015 pleckstrin homology domain interacting protein [Homo... KAT2B 0.011 K(lysine) acetyltransferase 2B BRD3 0.011 bromodomain containing protein 3 BRD4 0.011 bromodomain-containing protein 4 isoform short BRD4 0.011 bromodomain-containing protein 4 isoform long KAT2A 0.011 general control of amino acid synthesis 5-like 2 [H... BRWD3 0.011 bromodomain and WD repeat domain containing 3 [Homo... BRD7 0.011 bromodomain containing 7 BRD9 0.010 bromodomain containing 9 isoform 1 CREBBP 0.010 CREB binding protein isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.