PCDP1 35231

Name: PCDP1	Sequence: fasta or formatted (554aa)		NCBI GI: 71725367
Description: primary ciliary dyskinesia protein 1		Referenced in: Left-Right Axis
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.1 28 1 C cysteine 0.9 5 1 D aspartate 4.9 27 2 E glutamate 8.7 48 2 F phenylalanine 5.1 28 2 G glycine 2.7 15 1 H histidine 2.7 15 2 I isoleucine 5.1 28 2 K lysine 9.7 54 2 L leucine 9.9 55 2 M methionine 3.1 17 1 N asparagine 3.4 19 2 P proline 7.0 39 2 Q glutamine 6.3 35 2 R arginine 5.1 28 2 S serine 7.2 40 2 T threonine 4.5 25 2 V valine 5.4 30 2 W tryptophan 0.7 4 1 Y tyrosine 2.5 14 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 primary ciliary dyskinesia protein 1 EEA1 0.013 early endosome antigen 1, 162kD MYH3 0.010 myosin, heavy chain 3, skeletal muscle, embryonic [H... KIF18A 0.009 kinesin family member 18A PLEC1 0.009 plectin 1 isoform 11 PLEC1 0.009 plectin 1 isoform 10 PLEC1 0.009 plectin 1 isoform 8 PLEC1 0.009 plectin 1 isoform 7 PLEC1 0.009 plectin 1 isoform 6 PLEC1 0.009 plectin 1 isoform 3 PLEC1 0.009 plectin 1 isoform 2 PLEC1 0.009 plectin 1 isoform 1 WDR87 0.008 NYD-SP11 protein LOC283685 0.008 PREDICTED: golgi autoantigen, golgin subfamily a-li... FHAD1 0.007 forkhead-associated (FHA) phosphopeptide binding do... CHGA 0.007 chromogranin A precursor TCHH 0.007 trichohyalin SMC3 0.007 structural maintenance of chromosomes 3 AKAP9 0.007 A-kinase anchor protein 9 isoform 2 AKAP9 0.007 A-kinase anchor protein 9 isoform 3 MNS1 0.007 meiosis-specific nuclear structural 1 NEXN 0.007 nexilin (F actin binding protein) C10orf18 0.007 hypothetical protein LOC54906 ANKRD30B 0.006 ankyrin repeat domain 30B MYH10 0.006 myosin, heavy polypeptide 10, non-muscle KTN1 0.006 kinectin 1 isoform b FLJ44817 0.006 similar to pleckstrin homology domain protein (5V32... KIF3A 0.006 kinesin family member 3A PPL 0.006 periplakin RB1CC1 0.006 Rb1-inducible coiled coil protein 1 isoform 2 [Homo... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.