Guide to the Human Genome
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Name: ATF7IP Sequence: fasta or formatted (1270aa) NCBI GI: 38261962
Description:

activating transcription factor 7 interacting protein

Referenced in:

CREB / ATF Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         88           2
 C cysteine            1.2         15           1
 D aspartate           6.8         86           3
 E glutamate           8.6        109           4
 F phenylalanine       1.5         19           1
 G glycine             4.2         53           1
 H histidine           1.6         20           2
 I isoleucine          3.9         50           2
 K lysine              5.7         72           2
 L leucine             7.2         91           2
 M methionine          1.2         15           1
 N asparagine          5.0         63           3
 P proline            10.2        129           2
 Q glutamine           4.7         60           2
 R arginine            3.0         38           3
 S serine             11.7        148           3
 T threonine           8.0        102           3
 V valine              7.4         94           2
 W tryptophan          0.3          4           1
 Y tyrosine            1.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   activating transcription factor 7 interacting protei... 
ATF7IP2               0.046   activating transcription factor 7 interacting protei...
MUC2                  0.028   mucin 2 precursor 
MAP4                  0.025   microtubule-associated protein 4 isoform 4 
MAP4                  0.025   microtubule-associated protein 4 isoform 1 
LOC100294420          0.024   PREDICTED: similar to mucin 2 
DSPP                  0.024   dentin sialophosphoprotein preproprotein 
MUC6                  0.023   mucin 6, gastric 
MUC17                 0.022   mucin 17 
LOC100294236          0.021   PREDICTED: similar to diffuse panbronchiolitis crit...
PRG4                  0.021   proteoglycan 4 isoform B 
PRG4                  0.021   proteoglycan 4 isoform A 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
PRG4                  0.021   proteoglycan 4 isoform D 
PRG4                  0.021   proteoglycan 4 isoform C 
SPEN                  0.020   spen homolog, transcriptional regulator 
MUC5B                 0.019   mucin 5, subtype B, tracheobronchial 
MUC5AC                0.018   mucin 5AC 
TPR                   0.018   nuclear pore complex-associated protein TPR 
NACA                  0.017   nascent polypeptide-associated complex alpha subuni...
MUC3B                 0.017   PREDICTED: mucin 3B, cell surface associated, parti...
ZAN                   0.017   zonadhesin isoform 3 
ZAN                   0.017   zonadhesin isoform 6 
IWS1                  0.016   IWS1 homolog 
LOC100133756          0.016   PREDICTED: hypothetical protein, partial 
MUC3A                 0.016   PREDICTED: mucin 3A, intestinal 
MAP4                  0.016   microtubule-associated protein 4 isoform 2 
MDC1                  0.016   mediator of DNA-damage checkpoint 1 
LOC100128719          0.015   PREDICTED: hypothetical protein, partial 
LOC100128719          0.015   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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