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Search of human proteins with 47271406
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
(689 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens] 1438 0.0
gi|13376611 zinc finger protein 703 [Homo sapiens] 54 4e-07
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 53 1e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 52 2e-06
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 52 2e-06
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 51 3e-06
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 51 4e-06
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 51 4e-06
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 51 4e-06
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 51 4e-06
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 50 5e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 50 7e-06
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 50 9e-06
gi|13994287 BTE-binding protein 4 [Homo sapiens] 49 1e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 49 1e-05
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 49 1e-05
gi|32171233 BCDIN3 domain containing [Homo sapiens] 49 2e-05
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 49 2e-05
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 49 2e-05
gi|38788260 bromodomain PHD finger transcription factor isoform ... 49 2e-05
gi|38788274 bromodomain PHD finger transcription factor isoform ... 49 2e-05
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 48 3e-05
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 48 3e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 48 3e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 48 3e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 48 3e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 48 3e-05
gi|33636756 MAP/microtubule affinity-regulating kinase 4 [Homo s... 48 3e-05
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 47 5e-05
gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens] 47 5e-05
>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
Length = 689
Score = 1438 bits (3723), Expect = 0.0
Identities = 689/689 (100%), Positives = 689/689 (100%)
Query: 1 MIEMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGS 60
MIEMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGS
Sbjct: 1 MIEMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGS 60
Query: 61 PAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGG 120
PAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGG
Sbjct: 61 PAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGG 120
Query: 121 GTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFKRRRRVNSDCDSV 180
GTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFKRRRRVNSDCDSV
Sbjct: 121 GTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFKRRRRVNSDCDSV 180
Query: 181 LPSNFLLGGNIFDPLNLNSLLDEEVSRTLNAETPKSSPLPAKGRDPVEILIPKDITDPLS 240
LPSNFLLGGNIFDPLNLNSLLDEEVSRTLNAETPKSSPLPAKGRDPVEILIPKDITDPLS
Sbjct: 181 LPSNFLLGGNIFDPLNLNSLLDEEVSRTLNAETPKSSPLPAKGRDPVEILIPKDITDPLS 240
Query: 241 LNTCTDEGHVVLASPLKTGRKRHRHRGQHHQQQQAAGGSESHPVPPTAPLTPLLHGEGAS 300
LNTCTDEGHVVLASPLKTGRKRHRHRGQHHQQQQAAGGSESHPVPPTAPLTPLLHGEGAS
Sbjct: 241 LNTCTDEGHVVLASPLKTGRKRHRHRGQHHQQQQAAGGSESHPVPPTAPLTPLLHGEGAS 300
Query: 301 QQPRHRGQNRDAPQPYELNTAINCRDEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSS 360
QQPRHRGQNRDAPQPYELNTAINCRDEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSS
Sbjct: 301 QQPRHRGQNRDAPQPYELNTAINCRDEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSS 360
Query: 361 RHRKRRRTSSKSEAGARGGGQGSKEKGRGSWGGRHHHHHPLPAAGFKKQQRKFQYGNYCK 420
RHRKRRRTSSKSEAGARGGGQGSKEKGRGSWGGRHHHHHPLPAAGFKKQQRKFQYGNYCK
Sbjct: 361 RHRKRRRTSSKSEAGARGGGQGSKEKGRGSWGGRHHHHHPLPAAGFKKQQRKFQYGNYCK 420
Query: 421 YYGYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLI 480
YYGYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLI
Sbjct: 421 YYGYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLI 480
Query: 481 HSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVP 540
HSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVP
Sbjct: 481 HSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVP 540
Query: 541 LDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 600
LDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF
Sbjct: 541 LDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 600
Query: 601 RRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSS 660
RRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSS
Sbjct: 601 RRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSS 660
Query: 661 YELVATPHNTSKGFQRPVYLFHKARSPSH 689
YELVATPHNTSKGFQRPVYLFHKARSPSH
Sbjct: 661 YELVATPHNTSKGFQRPVYLFHKARSPSH 689
>gi|13376611 zinc finger protein 703 [Homo sapiens]
Length = 590
Score = 54.3 bits (129), Expect = 4e-07
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 18/169 (10%)
Query: 2 IEMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQE-----AASGELRGGTERGPGRCAP 56
IE+ A+K P + L G P PP + AA+ L G E+ PGR AP
Sbjct: 80 IELDAKKSPLAL------LAQTCSQIGKPDPPPSSKLNSVAAAANGL--GAEKDPGRSAP 131
Query: 57 SAGSPAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEER 116
A S AAA+ + A SS + GGG + G + +S ++ G++
Sbjct: 132 GAASAAAALKQLGDSPAEDKSSFKPYSKGSGGGDSRKDSGSSSVSS-TSSSSSSSPGDKA 190
Query: 117 RGGGGTELGPPAPPR--PRNGYQPHRPPGG--GGGKRRNSCNVGGGGGG 161
+ PP PP P + PGG GG + C GGG GG
Sbjct: 191 GFRVPSAACPPFPPHGAPVSASSSSSSPGGSRGGSPHHSDCKNGGGVGG 239
Score = 33.5 bits (75), Expect = 0.67
Identities = 60/258 (23%), Positives = 93/258 (36%), Gaps = 35/258 (13%)
Query: 142 PGGGGGKRRNSCNVGGGGGGFKHPAFKRRRRVNSDCDSVLPSNFLLGGNIFDPLNLNSLL 201
P G + S G GGGG K PA + D + +N L P+ + +L
Sbjct: 5 PAGSNPRTPESSGSGSGGGG-KRPAVPAAVSLLPPADPLRQANRL-------PIRVLKML 56
Query: 202 DEEVSRTLNAETPKSSPLPAKGRDPVEILIPKDITDPLSL--NTCTDEG----------H 249
L+ E + PL + P+E+ K PL+L TC+ G +
Sbjct: 57 SAHTGHLLHPEYLQ--PLSSTPVSPIELDAKKS---PLALLAQTCSQIGKPDPPPSSKLN 111
Query: 250 VVLASPLKTGRKRHRHRGQHHQQQQAAGGSE--SHPVPPTAPLTPLLHGEGASQQPRHRG 307
V A+ G ++ R AA + P + P G G + G
Sbjct: 112 SVAAAANGLGAEKDPGRSAPGAASAAAALKQLGDSPAEDKSSFKPYSKGSGGGDSRKDSG 171
Query: 308 QNRDAPQPYELNTAINCRDEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSSRHRKRRR 367
+ + +++ + D+ +PSA P PP + +SA SSSS R
Sbjct: 172 SS--SVSSTSSSSSSSPGDKAGFRVPSAACPPF-----PPHGAPVSASSSSSSPGGSRGG 224
Query: 368 TSSKSEAGARGGGQGSKE 385
+ S+ GGG G E
Sbjct: 225 SPHHSDC-KNGGGVGGGE 241
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 52.8 bits (125), Expect = 1e-06
Identities = 53/161 (32%), Positives = 62/161 (38%), Gaps = 28/161 (17%)
Query: 14 PAPPP-PLKDESGGGGG----PTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGR- 67
P P P P GG GG P PP + A G GG G G P G R
Sbjct: 696 PGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG--GPGGGMVGGGGHRP 753
Query: 68 -ESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGG---TE 123
E PG +SSG + + GGG H R + PG + GGGG
Sbjct: 754 HEGPGGGMGNSSGHRPHEGPGGG-MGSGH---RPHEGPGGS---------MGGGGGHRPH 800
Query: 124 LGPPAPPRPRNGYQPHRPPGGG---GGKRRNSCNVGGGGGG 161
GP +G++PH PGGG GG R GG GG
Sbjct: 801 EGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGG 841
Score = 50.4 bits (119), Expect = 5e-06
Identities = 47/163 (28%), Positives = 57/163 (34%), Gaps = 25/163 (15%)
Query: 14 PAPPPPLKDESGG--GGGPTVPPHQEAASGELRGG----TERGPGRCAPSAGSPAAAVGR 67
P PPPP + GG GGGP P + G + GG GPG G+ +
Sbjct: 716 PPPPPPFRGARGGRSGGGP--PNGRGGPGGGMVGGGGHRPHEGPGG---GMGNSSGHRPH 770
Query: 68 ESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPP 127
E PG S P H G G G R + PG G G G +G
Sbjct: 771 EGPGGGMGSGHRP----HEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAG 826
Query: 128 APPRPRNG----------YQPHRPPGGGGGKRRNSCNVGGGGG 160
RP G ++PH PG GG +V G G
Sbjct: 827 GGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG 869
Score = 49.3 bits (116), Expect = 1e-05
Identities = 50/180 (27%), Positives = 58/180 (32%), Gaps = 40/180 (22%)
Query: 14 PAPPPPLKDESGGGGGPTVP------------------PHQEAASGELRGGTERGPGRCA 55
P P P+ GG GGP P P G +RGG GPG
Sbjct: 645 PGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYH 704
Query: 56 PSAGSPAAAVGRESP-------GAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAA 108
G G E P GA S G G G G R + PG
Sbjct: 705 RGRGGRG---GNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGM 761
Query: 109 PPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGG----GGGKRRNSCNVGGGGGGFKH 164
G G G +G +G++PH PGG GGG R + GG GG H
Sbjct: 762 GNSSGHRPHEGPGGGMG--------SGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGH 813
Score = 42.4 bits (98), Expect = 0.001
Identities = 42/140 (30%), Positives = 43/140 (30%), Gaps = 26/140 (18%)
Query: 25 GGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAAATSSSGPQAQQ 84
GG GGP H G G GPG G GP
Sbjct: 632 GGPGGPKGMQHFPPGPGGPMPGPHGGPG------------------GPVGPRLLGPPPPP 673
Query: 85 HRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRP-----RNGYQPH 139
RGG P G+ P P G RG GG P PP P R G
Sbjct: 674 -RGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGG 732
Query: 140 RPPGGGGGKRRNSCNVGGGG 159
PP G GG VGGGG
Sbjct: 733 GPPNGRGGP--GGGMVGGGG 750
Score = 42.4 bits (98), Expect = 0.001
Identities = 44/158 (27%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 25 GGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAAATSSSGPQAQQ 84
GGG G PH E G + GG P P G + R G +G +
Sbjct: 774 GGGMGSGHRPH-EGPGGSMGGGGGHRPHE-GPGGGISGGSGHRPHEGPGGGMGAGGGHRP 831
Query: 85 HRGGGPQAQSHGEARLSDPPGRAAPP-----DVGEERRGGGGTELGPPAPPRPRNGYQPH 139
H G G G R + PG P DV R G GPP P G H
Sbjct: 832 HEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHR---GHDHRGPP--PHEHRG---H 883
Query: 140 RPPGGGGGKRRNSCNVGGGGGGFKHPAFKRRRRVNSDC 177
PG GGG R GG + R + +C
Sbjct: 884 DGPGHGGGGHRGHDGGHSHGGDMSNRPVCRHFMMKGNC 921
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 52.0 bits (123), Expect = 2e-06
Identities = 40/136 (29%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 26 GGGGPTVPPHQEAASGELRGGTERGPG-----RCAPSAGSPAAAVGRESPGAAATSSSGP 80
G GP PP ++ GE+ ++G + P P +G+ P + A GP
Sbjct: 1144 GPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGP-SGADGEPGP 1202
Query: 81 QAQQHRGGGPQAQSHGEARLSDPPG----RAAPPDVGEERRGGGGTELGPPAPPRPR--- 133
+ QQ G Q G PPG + P GE+ G ++GPP PP PR
Sbjct: 1203 RGQQGLFG--QKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPS 1260
Query: 134 ---NGYQPHRPPGGGG 146
P PPGG G
Sbjct: 1261 GAPGADGPQGPPGGIG 1276
Score = 40.8 bits (94), Expect = 0.004
Identities = 42/130 (32%), Positives = 49/130 (37%), Gaps = 12/130 (9%)
Query: 26 GGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRE----SPGAAAT-SSSGP 80
G GP PP GE +GP R PA GR S GA +GP
Sbjct: 568 GRPGPVGPPGSGGLKGEPGDVGPQGP-RGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGP 626
Query: 81 QAQQHRGGGPQAQSHGEARLSDPPGRAAPPDV-GEERRGGGGTELGP---PAPPRPRNGY 136
+ RG A GE PG + PP G++ G E+GP P P PR
Sbjct: 627 KGD--RGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLL 684
Query: 137 QPHRPPGGGG 146
P PPG G
Sbjct: 685 GPKGPPGPPG 694
Score = 40.8 bits (94), Expect = 0.004
Identities = 43/140 (30%), Positives = 49/140 (35%), Gaps = 18/140 (12%)
Query: 17 PPPLKDESGGGG--GPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAAA 74
PP K E+G G GP PP SG +GP G+P A + PG A
Sbjct: 1235 PPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGP---PGGIGNPGAVGEKGEPGEA- 1290
Query: 75 TSSSGPQAQQHRGGGPQAQ-SHGEARLSDPPGRAAPP-------DVGEERRGGGGTELGP 126
G GG P + GE S P G A PP D G + G G
Sbjct: 1291 ----GEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGD 1346
Query: 127 PAPPRPRNGYQPHRPPGGGG 146
P PP PPG G
Sbjct: 1347 PGPPGEPGPAGQDGPPGDKG 1366
Score = 39.7 bits (91), Expect = 0.009
Identities = 48/164 (29%), Positives = 56/164 (34%), Gaps = 25/164 (15%)
Query: 7 EKEPFLVPAPP----PPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA 62
E P PP PP D G GP P GE + GP G P
Sbjct: 1313 ESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPG 1372
Query: 63 AAVGRESPGAAATSS-SGPQAQQHRGG--GPQAQ-----SHGEARLSDPPGRAAP--PDV 112
SPG SGP ++ G GP+ + + GEA L PPG+ P P
Sbjct: 1373 QT---GSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQG 1429
Query: 113 GEERRGGGGT--------ELGPPAPPRPRNGYQPHRPPGGGGGK 148
+ G G E G P P P P PPG G K
Sbjct: 1430 APGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLK 1473
Score = 38.9 bits (89), Expect = 0.016
Identities = 48/174 (27%), Positives = 58/174 (33%), Gaps = 22/174 (12%)
Query: 14 PAPPPPLKDESG--GGGGPTVPPHQEAASGELRGGTERGPGRCA----PSAGSPAAAVGR 67
P PP P + SG G GP PP G + G + PG P G P G
Sbjct: 1251 PGPPGP-RGPSGAPGADGPQGPPGGIGNPGAV--GEKGEPGEAGEPGLPGEGGPPGPKGE 1307
Query: 68 -----ESPGAAATSSSGPQAQQHRGG-----GPQA--QSHGEARLSDPPGRAAPP-DVGE 114
ES + A GP+ G GP G P G+ PP D G+
Sbjct: 1308 RGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGD 1367
Query: 115 ERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFK 168
+ G GP P P PPG G + R G G + P K
Sbjct: 1368 DGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGK 1421
Score = 36.2 bits (82), Expect = 0.10
Identities = 46/166 (27%), Positives = 60/166 (36%), Gaps = 39/166 (23%)
Query: 14 PAPPPPLKDESGGGG--------GPTVPPHQEAASGELRGGTERG-PGRCAPSAGSPAAA 64
PA PP + +G G GP PP ++ G E G G+ P P
Sbjct: 941 PAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPG--PPGV 998
Query: 65 VGRESPGAAATSSSGPQAQQHRGG--GPQAQ------SHGEARLSDP-----PGRAAPPD 111
VG + P T +GP ++ G GP + + E DP PG+ PP
Sbjct: 999 VGPQGP----TGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPG 1054
Query: 112 V----GEERRGGGGTELG------PPAPPRPRNGYQPHRPPGGGGG 147
+ G+ G LG PP PP P G R P G G
Sbjct: 1055 LRGFPGDRGLPGPVGALGLKGNEGPPGPPGPA-GSPGERGPAGAAG 1099
Score = 35.8 bits (81), Expect = 0.14
Identities = 51/178 (28%), Positives = 65/178 (36%), Gaps = 40/178 (22%)
Query: 14 PAPPPPLKDESGGGG--------GPTVPPHQEAASGE-----LRG-----GTERGPGRCA 55
PA P + E G G G T P + A G+ LRG G + PG +
Sbjct: 1397 PAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPG--S 1454
Query: 56 PSAGSPAAAVGRESPGAAATSS-SGPQAQQHRGG-----GPQAQS--HGEARLSDPPGRA 107
P P +G PG SGP+ ++ G GP + G+ L P G +
Sbjct: 1455 PGPDGPPGPMG--PPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSS 1512
Query: 108 APPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHP 165
P GE+ G +GPP PP PPG G K S G G HP
Sbjct: 1513 GPK--GEQGITGPSGPIGPPGPPGLPG------PPGPKGAK--GSSGPTGPKGEAGHP 1560
Score = 34.3 bits (77), Expect = 0.40
Identities = 42/143 (29%), Positives = 49/143 (34%), Gaps = 18/143 (12%)
Query: 17 PPPLKDESG-----GGGGPTVPPHQEAASGELRG-----GTERGPGRCAP--SAGSPA-A 63
PP + E G G GGP P GE +G G PGR P S G P
Sbjct: 833 PPGPRGEDGPEGPKGRGGPNGDPGPLGPPGE-KGKLGVPGLPGYPGRQGPKGSIGFPGFP 891
Query: 64 AVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTE 123
E G GP+ Q RG G ++ PG + G + G E
Sbjct: 892 GANGEKGGRGTPGKPGPRGQ--RGPTGPRGERGPRGITGKPGPKG--NSGGDGPAGPPGE 947
Query: 124 LGPPAPPRPRNGYQPHRPPGGGG 146
GP P P P PPG G
Sbjct: 948 RGPNGPQGPTGFPGPKGPPGPPG 970
Score = 33.9 bits (76), Expect = 0.52
Identities = 44/173 (25%), Positives = 52/173 (30%), Gaps = 26/173 (15%)
Query: 3 EMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA 62
E A + L+ PP P G G PP +G++ ERGP P
Sbjct: 457 EPAIIEPGMLIEGPPGP-----EGPAGLPGPPGTMGPTGQVGDPGERGP----PGRPGLP 507
Query: 63 AAVGRESP------------GAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPG----R 106
A G P G S GP L P G
Sbjct: 508 GADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLT 567
Query: 107 AAPPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGG 159
P VG GG E G P PR G Q P G G+R + + G G
Sbjct: 568 GRPGPVGPPGSGGLKGEPGDVGPQGPR-GVQGPPGPAGKPGRRGRAGSDGARG 619
Score = 33.5 bits (75), Expect = 0.67
Identities = 35/135 (25%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 29 GPTVPPHQEAASGEL-RGGTERGPGRCAPSAGSPAAAV-------GRESPGAAATSSSGP 80
GP P ++ G RGG PG P V GR+ P + P
Sbjct: 832 GPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFP 891
Query: 81 QAQQHRGG-------GPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPR 133
A +GG GP+ Q + R G + GG GP PP R
Sbjct: 892 GANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGD---GPAGPPGER 948
Query: 134 NGYQPHRPPGGGGGK 148
P P G G K
Sbjct: 949 GPNGPQGPTGFPGPK 963
Score = 33.1 bits (74), Expect = 0.88
Identities = 37/135 (27%), Positives = 44/135 (32%), Gaps = 15/135 (11%)
Query: 26 GGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESP----GAAATSSSGPQ 81
G GP+ PP GE E GP R P P +G + P G + Q
Sbjct: 646 GDPGPSGPPGPPGDDGERGDDGEVGP-RGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQ 704
Query: 82 AQQHRGGGPQAQS--------HGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPR 133
GPQ + G L P G PP GE+ G G P P
Sbjct: 705 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPP--GEKGPLGKPGLPGMPGADGPP 762
Query: 134 NGYQPHRPPGGGGGK 148
PPG GG+
Sbjct: 763 GHPGKEGPPGEKGGQ 777
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 51.6 bits (122), Expect = 2e-06
Identities = 40/144 (27%), Positives = 55/144 (38%), Gaps = 8/144 (5%)
Query: 3 EMAAEKEPFLVPAPPPPLKDESGGGG-GPTVPPHQEAASGELRGGTERGPGRCAPSAGSP 61
+++ E+ P L+ P + G GP PP + G +GP G P
Sbjct: 22 DVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 81
Query: 62 AAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLS-DPPGRAAPPDVGEERRGGG 120
SP + GP Q + GP AQ +++ + PPG+ P E G
Sbjct: 82 PQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQGPPQQE-----G 136
Query: 121 GTELGPPAPPRPRNGYQPHRPPGG 144
GPP PP N QP PP G
Sbjct: 137 NNPQGPP-PPAGGNPQQPQAPPAG 159
Score = 36.6 bits (83), Expect = 0.080
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 20/100 (20%)
Query: 68 ESPGAAATSSSGPQAQQHRGG--------------GPQAQSHGEARLSDPPGRA-APPDV 112
ESP A + GP Q GG GP Q + + PPG+ PP
Sbjct: 27 ESPSLIAGNPQGPSPQ---GGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQ 83
Query: 113 GEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNS 152
G++ R G P P P+ G +P PP GG K +++
Sbjct: 84 GDKSRSPRSPP-GKPQGPPPQGG-KPQGPPAQGGSKSQSA 121
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 51.2 bits (121), Expect = 3e-06
Identities = 37/147 (25%), Positives = 53/147 (36%), Gaps = 2/147 (1%)
Query: 3 EMAAEKEPFLVPAPPPPLKDESGGGG-GPTVPPHQEAASGELRGGTERGPGRCAPSAGSP 61
+++ E+ P L+ P + G GP PP + G +GP G P
Sbjct: 22 DVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 81
Query: 62 AAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGR-AAPPDVGEERRGGG 120
SP + GP Q + GP Q + + PPG+ PP G +
Sbjct: 82 PQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSA 141
Query: 121 GTELGPPAPPRPRNGYQPHRPPGGGGG 147
+ G P P + G P PP GG
Sbjct: 142 RSPPGKPQGPPQQEGNNPQGPPPPAGG 168
Score = 45.1 bits (105), Expect = 2e-04
Identities = 40/135 (29%), Positives = 49/135 (36%), Gaps = 12/135 (8%)
Query: 16 PPPPLKDESG---GGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGA 72
PPPP K + GG P PP G G + R P G + G
Sbjct: 51 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGP 110
Query: 73 AATSSSGPQAQQHRG--GGPQAQSHGEARLS-DPPGRAAPPDVGEERRGGGGTELGPPAP 129
+ PQ G GP AQ +++ + PPG+ P E G GPP P
Sbjct: 111 PPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQE-----GNNPQGPP-P 164
Query: 130 PRPRNGYQPHRPPGG 144
P N QP PP G
Sbjct: 165 PAGGNPQQPQAPPAG 179
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 50.8 bits (120), Expect = 4e-06
Identities = 93/372 (25%), Positives = 131/372 (35%), Gaps = 84/372 (22%)
Query: 19 PLKDESGGGGGPTVPPHQEAASGELRGGT-ERGPGRCAPSA--GSPAAAVGRESPG---- 71
PL + +GG GG T+P A GT R P P++ G A SPG
Sbjct: 57 PLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSS 116
Query: 72 ---AAATSSSGPQAQQ----------HRGGGPQAQ-----SHGEARLSDPPGRAAPPDVG 113
A+ T+ GP Q+ RG +A S G R + P P
Sbjct: 117 PGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAM 176
Query: 114 EERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFKRRRRV 173
R GTE+G PRP +P RPP G K +S + P+ RRR
Sbjct: 177 ARRSRAAGTEVG---LPRPAPSARP-RPPTEGPRKSVSSAS----EHSTTEPSPAARRRP 228
Query: 174 NSDCDSVLPSNFLLGGNIFDPLNLNSLLDEEVSRTLNAETPKSSPLPAKGRDPVEILIPK 233
++ P++ L + PL+ + T A S P P KG ++ L P
Sbjct: 229 SAGGGLQRPASRSLSSSA-TPLSSPARSGPSARGTPRAPAHPSQPKP-KG---LQALRPP 283
Query: 234 DITDPLSLNTCTDEGHVVLASPLKTGRKRHRHRGQHHQQQQAAGGSESHPVPPTAPLTPL 293
+T P + +SPL T + G+++ PVPP
Sbjct: 284 QVTPP--RKDAAPALGPLSSSPLAT---------------PSPSGTKARPVPPP------ 320
Query: 294 LHGEGASQQPRHRGQNRDAPQPYELNTAINCRDEVVSPLPSALQGPSG-----SLSAPPA 348
N P P L + + +PLP A PS +L +PPA
Sbjct: 321 --------------DNAATPLPATLPPS----PPLATPLPLAPPSPSAPPSLQTLPSPPA 362
Query: 349 ASVISAPPSSSS 360
APPS ++
Sbjct: 363 TPPSQAPPSMTT 374
Score = 36.6 bits (83), Expect = 0.080
Identities = 44/166 (26%), Positives = 57/166 (34%), Gaps = 35/166 (21%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASG---ELRGGTERGPGRCAPSAGSPAAAVGRESPGA 72
PPPP + S GP + H +A+ ELR G + GP A ++ P A + P A
Sbjct: 881 PPPPSRSPSSTLSGPDLAGHSSSATSTPEELR-GYDSGPEGGAAASPPPDAELAACHPAA 939
Query: 73 AATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGG-------GGTELG 125
+ + P A + G P PP G G G E
Sbjct: 940 WSRGPAPPLAFRGAPGAPLPW---------------PPATGPGSADGLCTIYETEGPESA 984
Query: 126 PPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFKRRR 171
PAP P PG GGK G G G + K+ R
Sbjct: 985 TPAP----GALDPGPSPGTSGGKA-----AAGAGAGASSRSPKQAR 1021
Score = 33.5 bits (75), Expect = 0.67
Identities = 38/146 (26%), Positives = 49/146 (33%), Gaps = 16/146 (10%)
Query: 10 PFLVPAPPP--PLKDESGGGGGPTVPPHQEAASG-ELRGGTERGPGRCAPSAGSPAAAVG 66
P P PP P K S T P A GG +R R S+ +P ++
Sbjct: 194 PSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPA 253
Query: 67 RESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGE------ERRGGG 120
R P A T + Q + G QA + PP + A P +G
Sbjct: 254 RSGPSARGTPRAPAHPSQPKPKGLQALRPPQV---TPPRKDAAPALGPLSSSPLATPSPS 310
Query: 121 GTELGPPAPP----RPRNGYQPHRPP 142
GT+ P PP P P PP
Sbjct: 311 GTKARPVPPPDNAATPLPATLPPSPP 336
Score = 29.6 bits (65), Expect = 9.7
Identities = 44/155 (28%), Positives = 55/155 (35%), Gaps = 39/155 (25%)
Query: 277 GGSESHPVPPTAPLT---PLLHGEGASQQPRHRGQNRDAPQPYELNTAINCRD------- 326
GG+ + P PP A L P G + RG AP P+ T D
Sbjct: 920 GGAAASP-PPDAELAACHPAAWSRGPAPPLAFRGAP-GAPLPWPPATGPGSADGLCTIYE 977
Query: 327 ----EVVSPLPSALQ-GPSGSLSAPPAASVISAPPSSSSRHRKR---------------- 365
E +P P AL GPS S AA+ A SS S + R
Sbjct: 978 TEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQH 1037
Query: 366 --RRT----SSKSEAGARGGGQGSKEKGRGSWGGR 394
RT +++ AG GGG G E G + G R
Sbjct: 1038 LLSRTLLLAAAEGAAGGSGGGPGGAEGGGVTGGAR 1072
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 50.8 bits (120), Expect = 4e-06
Identities = 46/143 (32%), Positives = 53/143 (37%), Gaps = 21/143 (14%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAA 73
PA PP + E G G P + + G PG P G P AA PGA
Sbjct: 987 PAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGP-VGQPGAAGADGEPGAR 1045
Query: 74 ATSSSGPQAQQHRGGGPQAQSHGEARLSDPPG----RAAPPDVGEERRGGGGTELGPPAP 129
GPQ G G + PPG + P GE+ G +GPP P
Sbjct: 1046 -----GPQGHFGAKG-----DEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGP 1095
Query: 130 PRPR-----NGYQ-PHRPPGGGG 146
P PR NG P PPGG G
Sbjct: 1096 PGPRGPAGPNGADGPQGPPGGVG 1118
Score = 49.7 bits (117), Expect = 9e-06
Identities = 44/147 (29%), Positives = 55/147 (37%), Gaps = 31/147 (21%)
Query: 14 PAPPPPLKDESGGGG-----------GPTVPPHQEAASGEL-RGGTERGPGRCAPSAGSP 61
P PP + G G GP PP ++ G + GT+ PG P
Sbjct: 834 PPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPG--------P 885
Query: 62 AAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGG 121
A G++ P A G + GGP + G S PPG A P GE G G
Sbjct: 886 PGAPGKDGP-AGLRGFPGERGLPGTAGGPGLK--GNEGPSGPPGPAGSP--GERGAAGSG 940
Query: 122 TELGPPAPPRPRNGYQPHRPPGGGGGK 148
+GPP P P+ PPG G K
Sbjct: 941 GPIGPPGRPGPQG------PPGAAGEK 961
Score = 39.3 bits (90), Expect = 0.012
Identities = 45/154 (29%), Positives = 60/154 (38%), Gaps = 24/154 (15%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASGELRGGTERG-PGRCAPSA-GSPAAAVGRESPGAA 73
P PP G GGP Q+ A G+ E G PG P+ P +G+ P A
Sbjct: 1189 PGPP------GEGGPR---GQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGP-AG 1238
Query: 74 ATSSSGPQAQQHRGGGPQAQSH-------GEARLSDPPG----RAAPPDVGEERRGGGGT 122
+ S G Q + G P A G A + PG R P VG++ R G
Sbjct: 1239 SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATG 1298
Query: 123 ELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVG 156
+ GPP P P G R G G++ + +G
Sbjct: 1299 QAGPPGPVGP-PGLPGLRGDAGAKGEKGHPGLIG 1331
Score = 36.6 bits (83), Expect = 0.080
Identities = 56/185 (30%), Positives = 65/185 (35%), Gaps = 29/185 (15%)
Query: 3 EMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA 62
E A + LV PP P G G PP + G + ERGP A GS
Sbjct: 301 EPAVLEPGMLVEGPPGP-----EGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDG 355
Query: 63 AAVGRESPGAAATSSSGPQAQQHRGG--GP-----QAQSHG---EARLS--DPPG----R 106
A PG TS P GG GP +AQ+ +ARL+ PPG
Sbjct: 356 A------PGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYT 409
Query: 107 AAPPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPA 166
P +G+ G E G P PR PPG G RR G G P
Sbjct: 410 GRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAG--RRGRAGADGARGMPGDPG 467
Query: 167 FKRRR 171
K R
Sbjct: 468 VKGDR 472
Score = 34.3 bits (77), Expect = 0.40
Identities = 44/152 (28%), Positives = 54/152 (35%), Gaps = 34/152 (22%)
Query: 14 PAPPPPL----------KDESGGGGGPTVPPHQEAASGELRGGT-ERG-PGRCAPSAGSP 61
P PP P K+ + G GP P ++ +G LRG ERG PG +AG P
Sbjct: 859 PGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAG-LRGFPGERGLPG----TAGGP 913
Query: 62 AAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGG 121
G E P + P + G G G PPG A V E+
Sbjct: 914 GLK-GNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK----- 967
Query: 122 TELGPPAPPRPRNGYQ-------PHRPPGGGG 146
P P R+G Q P PPG G
Sbjct: 968 ----GPIGPTGRDGVQGPVGLPGPAGPPGVAG 995
Score = 34.3 bits (77), Expect = 0.40
Identities = 36/136 (26%), Positives = 47/136 (34%), Gaps = 21/136 (15%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESP----- 70
PP P+ G G P ++ +G++ GP P PA G + P
Sbjct: 1065 PPGPI-----GLQGLPGPSGEKGETGDVGPMGPPGP----PGPRGPAGPNGADGPQGPPG 1115
Query: 71 GAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPP 130
G G + + G P Q GE + P G GE+ G E GPP P
Sbjct: 1116 GVGNLGPPGEKGEPGESGSPGIQ--GEPGVKGPRGER-----GEKGESGQPGEPGPPGPK 1168
Query: 131 RPRNGYQPHRPPGGGG 146
P P PG G
Sbjct: 1169 GPTGDDGPKGNPGPVG 1184
Score = 30.4 bits (67), Expect = 5.7
Identities = 36/132 (27%), Positives = 43/132 (32%), Gaps = 20/132 (15%)
Query: 17 PPPLKDESGGGGGPTVP--PHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAAA 74
PP L E G G P +P P ++ G L PG S A + +S
Sbjct: 699 PPGLMGEKGKLGVPGLPGYPGRQGPKGSLGF-----PGFPGASGEKGARGLSGKSGPRGE 753
Query: 75 TSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPRN 134
+GP+ Q RG G S G PP E G P P P
Sbjct: 754 RGPTGPRGQ--RGPRGATGKSGAKGTSGGDGPHGPPG-----------ERGLPGPQGPNG 800
Query: 135 GYQPHRPPGGGG 146
P PPG G
Sbjct: 801 FPGPKGPPGPPG 812
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 50.8 bits (120), Expect = 4e-06
Identities = 46/143 (32%), Positives = 53/143 (37%), Gaps = 21/143 (14%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAA 73
PA PP + E G G P + + G PG P G P AA PGA
Sbjct: 966 PAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGP-VGQPGAAGADGEPGAR 1024
Query: 74 ATSSSGPQAQQHRGGGPQAQSHGEARLSDPPG----RAAPPDVGEERRGGGGTELGPPAP 129
GPQ G G + PPG + P GE+ G +GPP P
Sbjct: 1025 -----GPQGHFGAKG-----DEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGP 1074
Query: 130 PRPR-----NGYQ-PHRPPGGGG 146
P PR NG P PPGG G
Sbjct: 1075 PGPRGPAGPNGADGPQGPPGGVG 1097
Score = 49.7 bits (117), Expect = 9e-06
Identities = 44/147 (29%), Positives = 55/147 (37%), Gaps = 31/147 (21%)
Query: 14 PAPPPPLKDESGGGG-----------GPTVPPHQEAASGEL-RGGTERGPGRCAPSAGSP 61
P PP + G G GP PP ++ G + GT+ PG P
Sbjct: 813 PPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPG--------P 864
Query: 62 AAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGG 121
A G++ P A G + GGP + G S PPG A P GE G G
Sbjct: 865 PGAPGKDGP-AGLRGFPGERGLPGTAGGPGLK--GNEGPSGPPGPAGSP--GERGAAGSG 919
Query: 122 TELGPPAPPRPRNGYQPHRPPGGGGGK 148
+GPP P P+ PPG G K
Sbjct: 920 GPIGPPGRPGPQG------PPGAAGEK 940
Score = 39.3 bits (90), Expect = 0.012
Identities = 45/154 (29%), Positives = 60/154 (38%), Gaps = 24/154 (15%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASGELRGGTERG-PGRCAPSA-GSPAAAVGRESPGAA 73
P PP G GGP Q+ A G+ E G PG P+ P +G+ P A
Sbjct: 1168 PGPP------GEGGPR---GQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGP-AG 1217
Query: 74 ATSSSGPQAQQHRGGGPQAQSH-------GEARLSDPPG----RAAPPDVGEERRGGGGT 122
+ S G Q + G P A G A + PG R P VG++ R G
Sbjct: 1218 SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATG 1277
Query: 123 ELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVG 156
+ GPP P P G R G G++ + +G
Sbjct: 1278 QAGPPGPVGP-PGLPGLRGDAGAKGEKGHPGLIG 1310
Score = 36.6 bits (83), Expect = 0.080
Identities = 56/185 (30%), Positives = 65/185 (35%), Gaps = 29/185 (15%)
Query: 3 EMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA 62
E A + LV PP P G G PP + G + ERGP A GS
Sbjct: 280 EPAVLEPGMLVEGPPGP-----EGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDG 334
Query: 63 AAVGRESPGAAATSSSGPQAQQHRGG--GP-----QAQSHG---EARLS--DPPG----R 106
A PG TS P GG GP +AQ+ +ARL+ PPG
Sbjct: 335 A------PGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYT 388
Query: 107 AAPPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPA 166
P +G+ G E G P PR PPG G RR G G P
Sbjct: 389 GRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAG--RRGRAGADGARGMPGDPG 446
Query: 167 FKRRR 171
K R
Sbjct: 447 VKGDR 451
Score = 34.3 bits (77), Expect = 0.40
Identities = 44/152 (28%), Positives = 54/152 (35%), Gaps = 34/152 (22%)
Query: 14 PAPPPPL----------KDESGGGGGPTVPPHQEAASGELRGGT-ERG-PGRCAPSAGSP 61
P PP P K+ + G GP P ++ +G LRG ERG PG +AG P
Sbjct: 838 PGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAG-LRGFPGERGLPG----TAGGP 892
Query: 62 AAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGG 121
G E P + P + G G G PPG A V E+
Sbjct: 893 GLK-GNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK----- 946
Query: 122 TELGPPAPPRPRNGYQ-------PHRPPGGGG 146
P P R+G Q P PPG G
Sbjct: 947 ----GPIGPTGRDGVQGPVGLPGPAGPPGVAG 974
Score = 34.3 bits (77), Expect = 0.40
Identities = 36/136 (26%), Positives = 47/136 (34%), Gaps = 21/136 (15%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESP----- 70
PP P+ G G P ++ +G++ GP P PA G + P
Sbjct: 1044 PPGPI-----GLQGLPGPSGEKGETGDVGPMGPPGP----PGPRGPAGPNGADGPQGPPG 1094
Query: 71 GAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPP 130
G G + + G P Q GE + P G GE+ G E GPP P
Sbjct: 1095 GVGNLGPPGEKGEPGESGSPGIQ--GEPGVKGPRGER-----GEKGESGQPGEPGPPGPK 1147
Query: 131 RPRNGYQPHRPPGGGG 146
P P PG G
Sbjct: 1148 GPTGDDGPKGNPGPVG 1163
Score = 30.4 bits (67), Expect = 5.7
Identities = 36/132 (27%), Positives = 43/132 (32%), Gaps = 20/132 (15%)
Query: 17 PPPLKDESGGGGGPTVP--PHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAAA 74
PP L E G G P +P P ++ G L PG S A + +S
Sbjct: 678 PPGLMGEKGKLGVPGLPGYPGRQGPKGSLGF-----PGFPGASGEKGARGLSGKSGPRGE 732
Query: 75 TSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPRN 134
+GP+ Q RG G S G PP E G P P P
Sbjct: 733 RGPTGPRGQ--RGPRGATGKSGAKGTSGGDGPHGPPG-----------ERGLPGPQGPNG 779
Query: 135 GYQPHRPPGGGG 146
P PPG G
Sbjct: 780 FPGPKGPPGPPG 791
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 50.8 bits (120), Expect = 4e-06
Identities = 46/143 (32%), Positives = 53/143 (37%), Gaps = 21/143 (14%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAA 73
PA PP + E G G P + + G PG P G P AA PGA
Sbjct: 1073 PAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGP-VGQPGAAGADGEPGAR 1131
Query: 74 ATSSSGPQAQQHRGGGPQAQSHGEARLSDPPG----RAAPPDVGEERRGGGGTELGPPAP 129
GPQ G G + PPG + P GE+ G +GPP P
Sbjct: 1132 -----GPQGHFGAKG-----DEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGP 1181
Query: 130 PRPR-----NGYQ-PHRPPGGGG 146
P PR NG P PPGG G
Sbjct: 1182 PGPRGPAGPNGADGPQGPPGGVG 1204
Score = 49.7 bits (117), Expect = 9e-06
Identities = 44/147 (29%), Positives = 55/147 (37%), Gaps = 31/147 (21%)
Query: 14 PAPPPPLKDESGGGG-----------GPTVPPHQEAASGEL-RGGTERGPGRCAPSAGSP 61
P PP + G G GP PP ++ G + GT+ PG P
Sbjct: 920 PPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPG--------P 971
Query: 62 AAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGG 121
A G++ P A G + GGP + G S PPG A P GE G G
Sbjct: 972 PGAPGKDGP-AGLRGFPGERGLPGTAGGPGLK--GNEGPSGPPGPAGSP--GERGAAGSG 1026
Query: 122 TELGPPAPPRPRNGYQPHRPPGGGGGK 148
+GPP P P+ PPG G K
Sbjct: 1027 GPIGPPGRPGPQG------PPGAAGEK 1047
Score = 39.3 bits (90), Expect = 0.012
Identities = 45/154 (29%), Positives = 60/154 (38%), Gaps = 24/154 (15%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASGELRGGTERG-PGRCAPSA-GSPAAAVGRESPGAA 73
P PP G GGP Q+ A G+ E G PG P+ P +G+ P A
Sbjct: 1275 PGPP------GEGGPR---GQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGP-AG 1324
Query: 74 ATSSSGPQAQQHRGGGPQAQSH-------GEARLSDPPG----RAAPPDVGEERRGGGGT 122
+ S G Q + G P A G A + PG R P VG++ R G
Sbjct: 1325 SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATG 1384
Query: 123 ELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVG 156
+ GPP P P G R G G++ + +G
Sbjct: 1385 QAGPPGPVGP-PGLPGLRGDAGAKGEKGHPGLIG 1417
Score = 36.6 bits (83), Expect = 0.080
Identities = 56/185 (30%), Positives = 65/185 (35%), Gaps = 29/185 (15%)
Query: 3 EMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA 62
E A + LV PP P G G PP + G + ERGP A GS
Sbjct: 387 EPAVLEPGMLVEGPPGP-----EGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDG 441
Query: 63 AAVGRESPGAAATSSSGPQAQQHRGG--GP-----QAQSHG---EARLS--DPPG----R 106
A PG TS P GG GP +AQ+ +ARL+ PPG
Sbjct: 442 A------PGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYT 495
Query: 107 AAPPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPA 166
P +G+ G E G P PR PPG G RR G G P
Sbjct: 496 GRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAG--RRGRAGADGARGMPGDPG 553
Query: 167 FKRRR 171
K R
Sbjct: 554 VKGDR 558
Score = 35.0 bits (79), Expect = 0.23
Identities = 47/163 (28%), Positives = 58/163 (35%), Gaps = 34/163 (20%)
Query: 7 EKEPFLVPAPPPPLKDESGGGGGPTVPP-----HQEAASGELRGGTERGPGRCAPSAGSP 61
E+ VP + E G GG T PP + + R TE GP A +A S
Sbjct: 314 EQTDLQVPPTADRFQAEEYGEGG-TDPPEGPYDYTYGYGDDYREETELGPALSAETAHSG 372
Query: 62 AAAVGRE------------SPGAAATSSSGPQAQQHRGGGPQAQSH----GEARLSDPPG 105
AAA G PG GP+ G P Q + G+ PPG
Sbjct: 373 AAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPG 432
Query: 106 RAAPPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGK 148
RA P G++ G P PP + P R GGG K
Sbjct: 433 RAGLP----------GSD-GAPGPP-GTSLMLPFRFGSGGGDK 463
Score = 34.3 bits (77), Expect = 0.40
Identities = 44/152 (28%), Positives = 54/152 (35%), Gaps = 34/152 (22%)
Query: 14 PAPPPPL----------KDESGGGGGPTVPPHQEAASGELRGGT-ERG-PGRCAPSAGSP 61
P PP P K+ + G GP P ++ +G LRG ERG PG +AG P
Sbjct: 945 PGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAG-LRGFPGERGLPG----TAGGP 999
Query: 62 AAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGG 121
G E P + P + G G G PPG A V E+
Sbjct: 1000 GLK-GNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK----- 1053
Query: 122 TELGPPAPPRPRNGYQ-------PHRPPGGGG 146
P P R+G Q P PPG G
Sbjct: 1054 ----GPIGPTGRDGVQGPVGLPGPAGPPGVAG 1081
Score = 34.3 bits (77), Expect = 0.40
Identities = 36/136 (26%), Positives = 47/136 (34%), Gaps = 21/136 (15%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESP----- 70
PP P+ G G P ++ +G++ GP P PA G + P
Sbjct: 1151 PPGPI-----GLQGLPGPSGEKGETGDVGPMGPPGP----PGPRGPAGPNGADGPQGPPG 1201
Query: 71 GAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPP 130
G G + + G P Q GE + P G GE+ G E GPP P
Sbjct: 1202 GVGNLGPPGEKGEPGESGSPGIQ--GEPGVKGPRGER-----GEKGESGQPGEPGPPGPK 1254
Query: 131 RPRNGYQPHRPPGGGG 146
P P PG G
Sbjct: 1255 GPTGDDGPKGNPGPVG 1270
Score = 30.4 bits (67), Expect = 5.7
Identities = 36/132 (27%), Positives = 43/132 (32%), Gaps = 20/132 (15%)
Query: 17 PPPLKDESGGGGGPTVP--PHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAAA 74
PP L E G G P +P P ++ G L PG S A + +S
Sbjct: 785 PPGLMGEKGKLGVPGLPGYPGRQGPKGSLGF-----PGFPGASGEKGARGLSGKSGPRGE 839
Query: 75 TSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPRN 134
+GP+ Q RG G S G PP E G P P P
Sbjct: 840 RGPTGPRGQ--RGPRGATGKSGAKGTSGGDGPHGPPG-----------ERGLPGPQGPNG 886
Query: 135 GYQPHRPPGGGG 146
P PPG G
Sbjct: 887 FPGPKGPPGPPG 898
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 50.4 bits (119), Expect = 5e-06
Identities = 53/171 (30%), Positives = 61/171 (35%), Gaps = 45/171 (26%)
Query: 10 PFLVPAPPPPLKDESGGGGGPT----VPPHQEAASGELRGGTERGPG----RCAPSAGSP 61
P L P P L+ GGG PT P H +A G GG+ +GP + P A S
Sbjct: 1037 PRLALGPQPSLRGWRGGGPSPTPGAPSPSHHGSAGG--GGGSSQGPALRYFQLPPRAASA 1094
Query: 62 AAAV------GRESPGAAATSSSGPQAQQHRGGG--PQAQSHGEARLSDPPGRAAP---- 109
A V GR+ P T G + +GGG P A PP AAP
Sbjct: 1095 AMYVPARSGRGRKGPLVKQTKVEG---EPQKGGGLPPAPSPTSPASPQPPPAVAAPSEKN 1151
Query: 110 -----------PDVGEERRG--GGGTELGPPAPPRPRNGYQPHRPPGGGGG 147
P R G TE PP P P G GGGGG
Sbjct: 1152 SIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGG-------GGGGG 1195
Score = 48.1 bits (113), Expect = 3e-05
Identities = 99/387 (25%), Positives = 132/387 (34%), Gaps = 73/387 (18%)
Query: 15 APPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAAA 74
A PP + +GGGGG P A + P +PS PA GAA
Sbjct: 1179 AEPPTQPEPTGGGGGGGSSPSPAPAMSPVPPSPSPVPTPASPS--GPATLDFTSQFGAAL 1236
Query: 75 TSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPRN 134
++ R GG Q ++ + L D G+E G GG LG A P PR
Sbjct: 1237 VGAA------RREGGWQNEARRRSTL------FLSTDAGDEDGGDGG--LGTGAAPGPRL 1282
Query: 135 GYQPHRPPG-----------------GGGGKRRNSCNVGGGGGGFKHPAFKRRRRVNSDC 177
+ G G GG S GGGGG +F R
Sbjct: 1283 RHSKSIDEGMFSAEPYLRLESAGSGAGYGGYGAGSRAYGGGGGSSAFTSFLPPR------ 1336
Query: 178 DSVLPSNFLLGGNIFDPLNLNSLLDEEVSRTLNAETPKSSPLPAKGRDPVEILIPKDITD 237
P L G DP + L R L + R P P+
Sbjct: 1337 ----PLVHPLTGKALDPASPLGLALAARERALKESSEGGGAPQPPPRPP----SPRYEAP 1388
Query: 238 PLSLNTCTDEGH--VVL----ASPLKTGRKRHRHRGQHHQQQQ-------AAGGSESHPV 284
P + + + H VL ASP R+ +R Q++ AA S H +
Sbjct: 1389 PPTPHHHSPHAHHEPVLRLWGASPPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHRL 1448
Query: 285 PPTAP-LTPLLHGEGASQQPRHRGQNRD----APQ-----PYELNTAINCRDEVVSPLPS 334
PPTAP + PLL G H G ++ AP+ P + NC+ +P+ S
Sbjct: 1449 PPTAPGVGPLLLQLGTEPPAPHPGVSKPWRSAAPEEPERLPLHVRFLENCQPR--APVTS 1506
Query: 335 ALQGPS-GSLSAPPAASVISAPPSSSS 360
PS PP + S PPS +S
Sbjct: 1507 GRGPPSEDGPGVPPPSPRRSVPPSPTS 1533
Score = 42.7 bits (99), Expect = 0.001
Identities = 94/440 (21%), Positives = 140/440 (31%), Gaps = 79/440 (17%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAP-SAGSPAAAVGRESPGAAA 74
PPP P VP + RGG PG P A SPA+ G P
Sbjct: 922 PPPTTSPPEPPYSTPPVPSSSGRLTPSPRGGPFN-PGSGGPLPASSPASFDGPSPPDTRV 980
Query: 75 TSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRA---APPDVGEERRGGGGTELGPPAPPR 131
S ++ H G P A H PP APP PP PP
Sbjct: 981 GSRE--KSLYHSGPLPPAHHH-------PPHHHHHHAPPPQPHHHHAH------PPHPPE 1025
Query: 132 PRNGYQPHRPP---------------GG------GGGKRRNSCNVGGGGGGFKHPAFKRR 170
G P PP GG G + + GGGGG + PA +
Sbjct: 1026 METGGSPDDPPPRLALGPQPSLRGWRGGGPSPTPGAPSPSHHGSAGGGGGSSQGPALRYF 1085
Query: 171 RRVNSDCDSVLPSNFLLGGNIFDPLNLNSLLDEEVSRTLNAETPKSSPLPAKGRDPVEIL 230
+ + + G PL + ++ E + S PA + P +
Sbjct: 1086 QLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAPSPTSPASPQPPPAVA 1145
Query: 231 IPKDITDPLSLNTCTDEGHVVLASPLKTGRKRHRHRGQHHQQQQAAGGSESHPVPPTAPL 290
P + + + + T +++ +P + R ++ GS + PPT P
Sbjct: 1146 APSE-KNSIPIPT------IIIKAPSTSSSGR------------SSQGSSTEAEPPTQPE 1186
Query: 291 TPLLHGEGASQQPRHRGQNRDAPQPYELNTAINCRDEVVSPLPSALQGPSG-SLSAPPAA 349
G G S + P P + P P++ GP+ ++ A
Sbjct: 1187 PTGGGGGGGSSPSPAPAMSPVPPSPSPV------------PTPASPSGPATLDFTSQFGA 1234
Query: 350 SVISAPPSSSSRHRKRRRTSS---KSEAGARGGGQGSKEKGRGSWGGRHHHHHPLPAAGF 406
+++ A + RR S+ ++AG GG G G G R H + F
Sbjct: 1235 ALVGAARREGGWQNEARRRSTLFLSTDAGDEDGGDGGLGTGAAP-GPRLRHSKSIDEGMF 1293
Query: 407 KKQQ--RKFQYGNYCKYYGY 424
+ R G+ Y GY
Sbjct: 1294 SAEPYLRLESAGSGAGYGGY 1313
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 50.1 bits (118), Expect = 7e-06
Identities = 37/133 (27%), Positives = 50/133 (37%), Gaps = 15/133 (11%)
Query: 16 PPPPLKDESG---GGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRES--P 70
PPPP K + GG P PP G +GP + SP + G+ P
Sbjct: 72 PPPPGKPQGPPPQGGNKPQGPPPP---------GKPQGPPPQGDKSRSPRSPPGKPQGPP 122
Query: 71 GAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGR-AAPPDVGEERRGGGGTELGPPAP 129
GP + GP Q + + PPG+ PP G+ + + G P
Sbjct: 123 PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQG 182
Query: 130 PRPRNGYQPHRPP 142
P P+ G QP PP
Sbjct: 183 PPPQGGNQPQGPP 195
Score = 46.2 bits (108), Expect = 1e-04
Identities = 41/155 (26%), Positives = 54/155 (34%), Gaps = 31/155 (20%)
Query: 16 PPPPLKDESG---GGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGA 72
PPPP K + GG P PP G+ +G +G + + P G P
Sbjct: 195 PPPPGKPQGPPPQGGNKPQGPP----PPGKPQGPPPQGDNKSQSARSPPGKPQG--PPPQ 248
Query: 73 AATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGR--AAPPDVGEERRG------------ 118
GP + GP Q + + PPG+ PP G + R
Sbjct: 249 GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPP 308
Query: 119 --GGGTELGPPAPPR------PRNGYQPHRPPGGG 145
GG GPP PP P+ G +P PP G
Sbjct: 309 PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 343
Score = 46.2 bits (108), Expect = 1e-04
Identities = 39/155 (25%), Positives = 52/155 (33%), Gaps = 11/155 (7%)
Query: 16 PPPPLKDESG---GGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGA 72
PPPP K + GG P PP G+ +G +G + S P G P
Sbjct: 257 PPPPGKPQGPPPQGGNKPQGPP----PPGKPQGPPPQGGSKSRSSRSPPGKPQG--PPPQ 310
Query: 73 AATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGR--AAPPDVGEERRGGGGTELGPPAPP 130
GP + GP Q + + PPG+ PP G + R P PP
Sbjct: 311 GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPP 370
Query: 131 RPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHP 165
+ PP GG ++ G G P
Sbjct: 371 QQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRP 405
Score = 45.8 bits (107), Expect = 1e-04
Identities = 41/155 (26%), Positives = 54/155 (34%), Gaps = 31/155 (20%)
Query: 16 PPPPLKDESG---GGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGA 72
PPPP K + GG P PP G+ +G +G + S P G P
Sbjct: 133 PPPPGKPQGPPPQGGNKPQGPP----PPGKPQGPPPQGDNKSRSSRSPPGKPQG--PPPQ 186
Query: 73 AATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRA-APPDVGEERRG------------- 118
GP + GP Q + + PPG+ PP G+ +
Sbjct: 187 GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPP 246
Query: 119 --GGGTELGPPAPPR------PRNGYQPHRPPGGG 145
GG GPP PP P+ G +P PP G
Sbjct: 247 PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 281
Score = 42.0 bits (97), Expect = 0.002
Identities = 37/145 (25%), Positives = 50/145 (34%), Gaps = 11/145 (7%)
Query: 3 EMAAEKEPFLVPAPPPPLKDESGGGG-GPTVPPHQEAASGELRGGTERGPGRCAPSAGSP 61
+++ E+ P L+ P + G GP PP + G +GP P G P
Sbjct: 22 DVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGP---PPPPGKP 78
Query: 62 AAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRA-APPDVGEERRGGG 120
P GP + GP Q PPG+ PP G + G
Sbjct: 79 QGP-----PPQGGNKPQGPPPPG-KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGP 132
Query: 121 GTELGPPAPPRPRNGYQPHRPPGGG 145
G P P P+ G +P PP G
Sbjct: 133 PPPPGKPQGPPPQGGNKPQGPPPPG 157
Score = 33.5 bits (75), Expect = 0.67
Identities = 34/134 (25%), Positives = 39/134 (29%), Gaps = 8/134 (5%)
Query: 277 GGSESHPVPPTAPLTPLLHGEGASQQPRHRGQNRDAPQPYELNTAINCRDEVVSPLPSAL 336
G P PP P P G+ SQ R P P N P
Sbjct: 209 GNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 268
Query: 337 QGPSGSLSAPPAASVISAPPSSSSRHRKRRRTSSKSEAGARGGG---QG-----SKEKGR 388
QG + PP PP S+ R R K + GG QG K +G
Sbjct: 269 QGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 328
Query: 389 GSWGGRHHHHHPLP 402
GG P P
Sbjct: 329 PPQGGNKPQGPPPP 342
Score = 29.6 bits (65), Expect = 9.7
Identities = 29/129 (22%), Positives = 38/129 (29%), Gaps = 2/129 (1%)
Query: 277 GGSESHPVPPTAPLTPLLHGEGASQQPRHRGQNRDAPQPYELNTAINCRDEVVSPLPSAL 336
G P PP P P G S+ R P P N P
Sbjct: 271 GNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 330
Query: 337 QGPSGSLSAPPAASVISAPPSSSSRHRKRRRTSSKSEAGARGGGQGSKEKGRGSWGGRHH 396
QG + PP PP S+ R R K + + +G+ +G G +
Sbjct: 331 QGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQ--QEGNNPQGPPPPAGGNP 388
Query: 397 HHHPLPAAG 405
P AG
Sbjct: 389 QQPQAPPAG 397
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 49.7 bits (117), Expect = 9e-06
Identities = 57/234 (24%), Positives = 86/234 (36%), Gaps = 26/234 (11%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAAAT 75
P PP SGGGGG + ++S GG G G+ + + ++V +SP A
Sbjct: 388 PRPPSVQPSGGGGGGSGGGGSSSSSNSSAGG---GAGK--QNGATSYSSVVADSPAEVAL 442
Query: 76 SSSGPQAQQHRGGGPQAQSHGEA-RLSDPPGRAAPPDVGEERRGGGGTELGP----PAPP 130
SSSG + GP + H S P AAP G G G GP P P
Sbjct: 443 SSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPV 502
Query: 131 RPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFKRRRRVNSDCDSVLPSNFLLGGN 190
P P P + + G P K ++S + +
Sbjct: 503 NP-----PSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEPLSS--LKSMAERAAISSG 555
Query: 191 IFDPLNLNSLLDEEVSRTLNAETPKSSPLPAKGRDPVEILIPKDITDPLSLNTC 244
I DP+ L + ++ + +S PA + P+++ ++ PLSL C
Sbjct: 556 IEDPVPTLHLTERDIILS------STSAPPASAQPPLQL---SEVNIPLSLGVC 600
Score = 43.1 bits (100), Expect = 9e-04
Identities = 54/202 (26%), Positives = 70/202 (34%), Gaps = 35/202 (17%)
Query: 198 NSLLDEEV---SRTLNAETPKSSPLPAKGRDPVEILIPKDITDPLSLNTCTDEGHVVLAS 254
+S +++E+ S + T SSP+P + ++ D TD V S
Sbjct: 246 HSHMEDEIFNQSSSTPTSTTSSSPIPPSPAN----CTTENSEDDKKRGRSTDSE--VSQS 299
Query: 255 PLKTGRKRHRHRGQHHQQQQAAGGSESHPVPPTAPLTPLLHGEGASQQPRHRGQNRDAPQ 314
P K G K H QH Q S VPPT P P S P + G A
Sbjct: 300 PAKNGSKPV-HSNQHPQ---------SPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAP 349
Query: 315 PYELNTAINCRDEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSSRHRKRRRTSSKSEA 374
P L P A PS + P + APP+ S + R S +
Sbjct: 350 PSALG-------------PKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPS 396
Query: 375 GARGGGQ---GSKEKGRGSWGG 393
G GGG GS S GG
Sbjct: 397 GGGGGGSGGGGSSSSSNSSAGG 418
Score = 35.4 bits (80), Expect = 0.18
Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 30/133 (22%)
Query: 30 PTVPPHQEAASGELRGGTERGPG-RCAPSAGSPAAAVGRESPGAAATSSSGPQAQQHRGG 88
P VPP + PG P+ +P +A+G ++ A + +S P
Sbjct: 317 PAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSHNSGTP-------- 368
Query: 89 GPQAQSHGEARLSDP-PGRAAPPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGG 147
P AQ+ S P + PP V GGGG+ GGGG
Sbjct: 369 APYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGS--------------------GGGGS 408
Query: 148 KRRNSCNVGGGGG 160
++ + GGG G
Sbjct: 409 SSSSNSSAGGGAG 421
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 49.3 bits (116), Expect = 1e-05
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAAS--GELRGGTERGPGRCAPSAGSPAAAVGRESPG 71
P PPPP SG G G PH AAS +LRGG PG +P++ S AA+ S G
Sbjct: 56 PGPPPPPPAASGPGPGAAAAPHLLAASILADLRGGPGAAPGGASPASSSSAAS--SPSSG 113
Query: 72 AAATSSSGPQAQQHR 86
A ++ A+ HR
Sbjct: 114 RAPGAAPSAAAKSHR 128
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 49.3 bits (116), Expect = 1e-05
Identities = 37/123 (30%), Positives = 44/123 (35%), Gaps = 11/123 (8%)
Query: 6 AEKEPFLVPAPPPPLKDESGGGGG----------PTVPPHQEAASGELRGGTERGPGRCA 55
AE P P PPP + GGGG P VP + +LR E G CA
Sbjct: 79 AEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCA 138
Query: 56 PSAGSPAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEE 115
P + A A G E A +GP A R G G PG+ A P +
Sbjct: 139 PVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGP-GPGPGKPAGPGAAQT 197
Query: 116 RRG 118
G
Sbjct: 198 LNG 200
Score = 48.9 bits (115), Expect = 2e-05
Identities = 44/151 (29%), Positives = 58/151 (38%), Gaps = 16/151 (10%)
Query: 6 AEKEPFLVPAPPPPL-----KDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGS 60
A P P PPPP + G PT P + GG+ AP+AG
Sbjct: 262 APAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGG 321
Query: 61 PAAAVGRESPGAAATS-SSGPQAQQHR----GGGPQAQSHGEARLSDPPGRAAPPDVGEE 115
PA G+ PGAAA + + G +A+ + P AQ+ S P AA +G
Sbjct: 322 PAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQT---LAASGPASTAASMVIGPT 378
Query: 116 RRGGGGTELGPPAPPRPRNGYQPHRPPGGGG 146
+G + P A P P G P G G
Sbjct: 379 MQGALPS---PAAVPPPAPGTPTGLPKGAAG 406
Score = 38.1 bits (87), Expect = 0.027
Identities = 42/140 (30%), Positives = 50/140 (35%), Gaps = 23/140 (16%)
Query: 30 PTVPPHQEAASGELRGGT-------ERGPGRCAPSAGSPAAA-----VGRESPGAAATSS 77
P P + AA+G L G G AP+ G+P AA GR PG
Sbjct: 45 PRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQR 104
Query: 78 SGPQAQQHRGGGPQAQSHGEARLSDPP----GRAAP-PDVGEERRGGGGTELGPPAPPRP 132
GP + + R P + A+L PP G AP P G GP P P
Sbjct: 105 PGPPSPR-RPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGP 163
Query: 133 -----RNGYQPHRPPGGGGG 147
R G P PG G G
Sbjct: 164 AALAARAGPGPGPGPGPGPG 183
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 49.3 bits (116), Expect = 1e-05
Identities = 42/137 (30%), Positives = 47/137 (34%), Gaps = 20/137 (14%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAA 73
P PPP GG PP G G + G P G P P
Sbjct: 183 PEGPPP----QGGNQSQGPPPRPGKPEGPPPQGGNQSQGP-PPRPGKPEGP-----PSQG 232
Query: 74 ATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRA-APPDVGEERRGGGGTELGPPA---- 128
GP + GP Q + + PPGR PP G G L PPA
Sbjct: 233 GNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPG----GNPQQPLPPPAGKPQ 288
Query: 129 -PPRPRNGYQPHRPPGG 144
PP P G +PHRPP G
Sbjct: 289 GPPPPPQGGRPHRPPQG 305
Score = 46.2 bits (108), Expect = 1e-04
Identities = 38/134 (28%), Positives = 48/134 (35%), Gaps = 12/134 (8%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAA 73
P PPP GG PP G G + G P G P P
Sbjct: 141 PEGPPP----QGGNQSQGPPPRPGKPEGPPPQGGNQSQGP-PPHPGKPEGP-----PPQG 190
Query: 74 ATSSSGPQAQQHRGGGPQAQSHGEARLSDP-PGRA-APPDVGEERRGGGGTELGPPAPPR 131
S GP + + GP Q +++ P PG+ PP G + G G P P
Sbjct: 191 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPP 250
Query: 132 PRNGYQPHRPPGGG 145
P+ G +P RPP G
Sbjct: 251 PQEGNKPQRPPPPG 264
Score = 44.7 bits (104), Expect = 3e-04
Identities = 39/136 (28%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 16 PPPPLKDE----SGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPG 71
PPPP K E GG PP G G + G P G P P
Sbjct: 51 PPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP-PPRPGKPEG-----QPP 104
Query: 72 AAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAP-- 129
S GP + + GP Q +++ PP R P+ G +GG ++ PP P
Sbjct: 105 QGGNQSQGPPPRPGKPEGPPPQGGNQSQ--GPPPRPGKPE-GPPPQGGNQSQGPPPRPGK 161
Query: 130 ---PRPRNGYQPHRPP 142
P P+ G Q PP
Sbjct: 162 PEGPPPQGGNQSQGPP 177
Score = 42.7 bits (99), Expect = 0.001
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 19/147 (12%)
Query: 3 EMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTE-RGPGRCAPSAGSP 61
+++ E+ P ++ P + + G T PP + +GG + +GP P G P
Sbjct: 22 DVSQEESPSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGP---PPRPGKP 78
Query: 62 AAAVGRESPGAAATSSSGPQAQQHRGGGPQAQS-HGEARLSDPPGRAAPPDVGEERRGGG 120
P S GP R G P+ Q G + PP R P+ G +GG
Sbjct: 79 EGP-----PPQGGNQSQGPPP---RPGKPEGQPPQGGNQSQGPPPRPGKPE-GPPPQGGN 129
Query: 121 GTELGPPAP-----PRPRNGYQPHRPP 142
++ PP P P P+ G Q PP
Sbjct: 130 QSQGPPPRPGKPEGPPPQGGNQSQGPP 156
Score = 42.0 bits (97), Expect = 0.002
Identities = 36/131 (27%), Positives = 46/131 (35%), Gaps = 12/131 (9%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAA 73
P PPP GG PP G+ G + G P G P P
Sbjct: 78 PEGPPP----QGGNQSQGPPPRPGKPEGQPPQGGNQSQGP-PPRPGKPEGP-----PPQG 127
Query: 74 ATSSSGPQAQQHRGGGPQAQSHGEARLSDP-PGRA-APPDVGEERRGGGGTELGPPAPPR 131
S GP + + GP Q +++ P PG+ PP G + G G P P
Sbjct: 128 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPP 187
Query: 132 PRNGYQPHRPP 142
P+ G Q PP
Sbjct: 188 PQGGNQSQGPP 198
Score = 41.2 bits (95), Expect = 0.003
Identities = 41/149 (27%), Positives = 50/149 (33%), Gaps = 22/149 (14%)
Query: 16 PPPPLKDES----GGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPG 71
PP P K E GG PP G G + G P G P P
Sbjct: 93 PPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP-PPRPGKPEGP-----PP 146
Query: 72 AAATSSSGPQAQQHRGGGPQAQSHGEARLSDP-PGRA-APPDVGEERRGGGGTELGPPAP 129
S GP + + GP Q +++ P PG+ PP G + G G P
Sbjct: 147 QGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEG 206
Query: 130 PRPRNGYQ----------PHRPPGGGGGK 148
P P+ G Q P PP GG K
Sbjct: 207 PPPQGGNQSQGPPPRPGKPEGPPSQGGNK 235
Score = 40.4 bits (93), Expect = 0.006
Identities = 36/134 (26%), Positives = 48/134 (35%), Gaps = 18/134 (13%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAA 73
P PPP GG PP G G + G P G P P
Sbjct: 120 PEGPPP----QGGNQSQGPPPRPGKPEGPPPQGGNQSQGP-PPRPGKPEGP-----PPQG 169
Query: 74 ATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRP- 132
S GP + GP Q +++ PP R P+ G +GG ++ PP P +P
Sbjct: 170 GNQSQGPPPHPGKPEGPPPQGGNQSQ--GPPPRPGKPE-GPPPQGGNQSQGPPPRPGKPE 226
Query: 133 ----RNGYQPHRPP 142
+ G +P PP
Sbjct: 227 GPPSQGGNKPQGPP 240
>gi|32171233 BCDIN3 domain containing [Homo sapiens]
Length = 292
Score = 48.9 bits (115), Expect = 2e-05
Identities = 53/226 (23%), Positives = 83/226 (36%), Gaps = 70/226 (30%)
Query: 415 YGNYCKYYGYRNPSCEDGRLRVLKPEWFRGRDV----------LDLGCNVGHLTLSIACK 464
+GN+ Y + P + RLR+L PE R LD+GCN G L++++
Sbjct: 31 FGNFPHYSRFHPP---EQRLRLLPPELLRQLFPESPENGPILGLDVGCNSGDLSVAL--- 84
Query: 465 WGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFP 524
+H+LS LP G + + R C
Sbjct: 85 ----------------------YKHFLS----LPD-------GETCSDASREFRLLCCDI 111
Query: 525 ASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQT-------PEYDV 577
+ R P FP+ + F+T +++ R V + +D+
Sbjct: 112 DPVLVKRAEKECP-----------FPDALTFITLDFMNQRTRKVLLSSFLSQFGRSVFDI 160
Query: 578 VLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSY 623
C+S+T W+HLN GD GL + L++EPQPW Y
Sbjct: 161 GFCMSITMWIHLNHGDHGLWEFLAHLSSLCH---YLLVEPQPWKCY 203
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 48.9 bits (115), Expect = 2e-05
Identities = 50/148 (33%), Positives = 57/148 (38%), Gaps = 30/148 (20%)
Query: 17 PPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAAATS 76
PP K E+G G P + A GE G ERGP G+P R PG A
Sbjct: 402 PPGEKGEAGDEGNPG----PDGAPGERGGPGERGP------RGTPGTRGPRGDPGEA--- 448
Query: 77 SSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPRNGY 136
GPQ Q R G + PG A P +G +G G E GPP R
Sbjct: 449 --GPQGDQGR--------EGPVGVPGDPGEAGP--IGP--KGYRGDE-GPPGSEGARGAP 493
Query: 137 QPHRPPGGGG--GKRRNSCNVGGGGGGF 162
P PPG G G+R G G GF
Sbjct: 494 GPAGPPGDPGLMGERGEDGPAGNGTEGF 521
Score = 35.0 bits (79), Expect = 0.23
Identities = 40/147 (27%), Positives = 47/147 (31%), Gaps = 21/147 (14%)
Query: 13 VPAPPPP--------LKDESG--GGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA 62
+ PP P LK E G G G P SG+ E GP P A
Sbjct: 354 IQGPPGPKGDPGAFGLKGEKGEPGADGEAGRPGSSGPSGDEGQPGEPGP----PGEKGEA 409
Query: 63 AAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPP-DVGEERRGGGG 121
G P A GP + RG G+ PG A P D G E G
Sbjct: 410 GDEGNPGPDGAPGERGGPGERGPRGTPGTRGPRGD------PGEAGPQGDQGREGPVGVP 463
Query: 122 TELGPPAPPRPRNGYQPHRPPGGGGGK 148
+ G P P+ PPG G +
Sbjct: 464 GDPGEAGPIGPKGYRGDEGPPGSEGAR 490
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 48.5 bits (114), Expect = 2e-05
Identities = 91/365 (24%), Positives = 132/365 (36%), Gaps = 86/365 (23%)
Query: 19 PLKDESGGGGGPTVPPHQEAASGELRGGT-ERGPGRCAPSA--GSPAAAVGRESPG---- 71
PL + +GG GG T+P A GT R P P++ G A SPG
Sbjct: 57 PLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSS 116
Query: 72 ---AAATSSSGPQAQQ----------HRGGGPQAQ-----SHGEARLSDPPGRAAPPDVG 113
A+ T+ GP Q+ RG +A S G R + P P
Sbjct: 117 PGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAM 176
Query: 114 EERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFKRRRRV 173
R GTE+G PRP +P RPP G K +S + P+ RRR
Sbjct: 177 ARRSRAAGTEVG---LPRPAPSARP-RPPTEGPRKSVSSAS----EHSTTEPSPAARRRP 228
Query: 174 NSDCDSVLPSNFLLGGNIFDPLNLNSLLDEEVSRTLNAETPKSSPLPAKGRDPVEILIPK 233
++ P++ L + PL+ + T A S P P KG ++ L P
Sbjct: 229 SAGGGLQRPASRSLSSSA-TPLSSPARSGPSARGTPRAPAHPSQPKP-KG---LQALRPP 283
Query: 234 DITDPLSLNTCTDEGHVVLASPLKTGRKRHRHRGQHHQQQQAAGGSESHPVPPTAPLTPL 293
+T P + +SPL T AA S++ PPT P TP
Sbjct: 284 QVTPP--RKDAAPALGPLSSSPLAT------------PSPSAALQSQA---PPTLPATP- 325
Query: 294 LHGEGASQQPRHRGQNRDAPQPYELNTAINCRDEVVSPLPSALQGPSGSLSAPPAASVIS 353
++++ C ++ +PLP A P SAPP+ +
Sbjct: 326 ------------------------HSSSLTC--QLATPLPLAPPSP----SAPPSLQTLP 355
Query: 354 APPSS 358
+PP++
Sbjct: 356 SPPAT 360
Score = 36.6 bits (83), Expect = 0.080
Identities = 44/166 (26%), Positives = 57/166 (34%), Gaps = 35/166 (21%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASG---ELRGGTERGPGRCAPSAGSPAAAVGRESPGA 72
PPPP + S GP + H +A+ ELR G + GP A ++ P A + P A
Sbjct: 612 PPPPSRSPSSTLSGPDLAGHSSSATSTPEELR-GYDSGPEGGAAASPPPDAELAACHPAA 670
Query: 73 AATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGG-------GGTELG 125
+ + P A + G P PP G G G E
Sbjct: 671 WSRGPAPPLAFRGAPGAPLPW---------------PPATGPGSADGLCTIYETEGPESA 715
Query: 126 PPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFKRRR 171
PAP P PG GGK G G G + K+ R
Sbjct: 716 TPAP----GALDPGPSPGTSGGKA-----AAGAGAGASSRSPKQAR 752
Score = 36.2 bits (82), Expect = 0.10
Identities = 36/136 (26%), Positives = 46/136 (33%), Gaps = 13/136 (9%)
Query: 10 PFLVPAPPP--PLKDESGGGGGPTVPPHQEAASG-ELRGGTERGPGRCAPSAGSPAAAVG 66
P P PP P K S T P A GG +R R S+ +P ++
Sbjct: 194 PSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPA 253
Query: 67 RESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGP 126
R P A T + Q + G QA + PP + A P +G P
Sbjct: 254 RSGPSARGTPRAPAHPSQPKPKGLQALRPPQV---TPPRKDAAPALGP-------LSSSP 303
Query: 127 PAPPRPRNGYQPHRPP 142
A P P Q PP
Sbjct: 304 LATPSPSAALQSQAPP 319
Score = 29.6 bits (65), Expect = 9.7
Identities = 44/155 (28%), Positives = 55/155 (35%), Gaps = 39/155 (25%)
Query: 277 GGSESHPVPPTAPLT---PLLHGEGASQQPRHRGQNRDAPQPYELNTAINCRD------- 326
GG+ + P PP A L P G + RG AP P+ T D
Sbjct: 651 GGAAASP-PPDAELAACHPAAWSRGPAPPLAFRGAP-GAPLPWPPATGPGSADGLCTIYE 708
Query: 327 ----EVVSPLPSALQ-GPSGSLSAPPAASVISAPPSSSSRHRKR---------------- 365
E +P P AL GPS S AA+ A SS S + R
Sbjct: 709 TEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQH 768
Query: 366 --RRT----SSKSEAGARGGGQGSKEKGRGSWGGR 394
RT +++ AG GGG G E G + G R
Sbjct: 769 LLSRTLLLAAAEGAAGGSGGGPGGAEGGGVTGGAR 803
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 48.5 bits (114), Expect = 2e-05
Identities = 40/132 (30%), Positives = 50/132 (37%), Gaps = 10/132 (7%)
Query: 43 LRGGTERGPGRCAPSAGSPAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSD 102
+RG R P + A A A P + G +HRG + +A ++
Sbjct: 1 MRGRRGRPPKQPAAPAAERCAPAPPPPPPPPTSGPIGGLRSRHRGSSRGRWAAAQAEVA- 59
Query: 103 PPGRAAPPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGF 162
P R + P R G PP PP P + P R GGGG R GGGGGG
Sbjct: 60 PKTRLSSP-----RGGSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTG----GGGGGGH 110
Query: 163 KHPAFKRRRRVN 174
RR VN
Sbjct: 111 LARTTAARRAVN 122
Score = 37.4 bits (85), Expect = 0.047
Identities = 39/128 (30%), Positives = 46/128 (35%), Gaps = 23/128 (17%)
Query: 266 RGQHHQQQQAAGGSESHPVPPTAPLTPLLHGEGASQQPRHRGQNRDAPQPYELNTAINCR 325
RG+ +Q A P PP P P G + RHRG +R + A R
Sbjct: 5 RGRPPKQPAAPAAERCAPAPPPPPPPPT-SGPIGGLRSRHRGSSRGRWAAAQAEVAPKTR 63
Query: 326 DEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSSRHRKRRRTSSKSEAGARGGGQGSKE 385
L S G S PP APPS+S+ R G RGGG G
Sbjct: 64 ------LSSPRGGSSSRRKPPPPP---PAPPSTSAPGR-----------GGRGGGGG--R 101
Query: 386 KGRGSWGG 393
G G GG
Sbjct: 102 TGGGGGGG 109
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 48.5 bits (114), Expect = 2e-05
Identities = 40/132 (30%), Positives = 50/132 (37%), Gaps = 10/132 (7%)
Query: 43 LRGGTERGPGRCAPSAGSPAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSD 102
+RG R P + A A A P + G +HRG + +A ++
Sbjct: 1 MRGRRGRPPKQPAAPAAERCAPAPPPPPPPPTSGPIGGLRSRHRGSSRGRWAAAQAEVA- 59
Query: 103 PPGRAAPPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGF 162
P R + P R G PP PP P + P R GGGG R GGGGGG
Sbjct: 60 PKTRLSSP-----RGGSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTG----GGGGGGH 110
Query: 163 KHPAFKRRRRVN 174
RR VN
Sbjct: 111 LARTTAARRAVN 122
Score = 37.4 bits (85), Expect = 0.047
Identities = 39/128 (30%), Positives = 46/128 (35%), Gaps = 23/128 (17%)
Query: 266 RGQHHQQQQAAGGSESHPVPPTAPLTPLLHGEGASQQPRHRGQNRDAPQPYELNTAINCR 325
RG+ +Q A P PP P P G + RHRG +R + A R
Sbjct: 5 RGRPPKQPAAPAAERCAPAPPPPPPPPT-SGPIGGLRSRHRGSSRGRWAAAQAEVAPKTR 63
Query: 326 DEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSSRHRKRRRTSSKSEAGARGGGQGSKE 385
L S G S PP APPS+S+ R G RGGG G
Sbjct: 64 ------LSSPRGGSSSRRKPPPPP---PAPPSTSAPGR-----------GGRGGGGG--R 101
Query: 386 KGRGSWGG 393
G G GG
Sbjct: 102 TGGGGGGG 109
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 48.1 bits (113), Expect = 3e-05
Identities = 43/141 (30%), Positives = 59/141 (41%), Gaps = 32/141 (22%)
Query: 12 LVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPG 71
LVPAP P +D+S P + +A+ L T +GP R P G PA GR+ P
Sbjct: 1376 LVPAPAPAQEDDSCTDSAEGTPVNFSSAAS-LSDETLQGPPRDQP--GGPA---GRQRPT 1429
Query: 72 AAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELG------ 125
TS+ +H+ GG GR+A E+ RG G G
Sbjct: 1430 GRPTSARQAMGHRHKAGG--------------AGRSA-----EQSRGAGKNRAGLELPLG 1470
Query: 126 -PPAPPRPRNGYQPHRPPGGG 145
PP+ P ++G +P R G G
Sbjct: 1471 RPPSAPADKDGSKPGRTRGDG 1491
Score = 32.0 bits (71), Expect = 2.0
Identities = 35/130 (26%), Positives = 46/130 (35%), Gaps = 33/130 (25%)
Query: 13 VPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGA 72
VP+P P + + G GP P + A P PAA SPG
Sbjct: 1796 VPSPAP--RAQPKGTPGPRATPRKVAP----------------PCLAQPAAPAKVPSPGQ 1837
Query: 73 AATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRP 132
+ S HR A++ A LS PP A PP + ++ P + P P
Sbjct: 1838 QRSRSL------HR----PAKTSELATLSQPPRSATPPARLAKTPSSSSSQTSPASQPLP 1887
Query: 133 RNGYQPHRPP 142
R RPP
Sbjct: 1888 RK-----RPP 1892
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 48.1 bits (113), Expect = 3e-05
Identities = 44/151 (29%), Positives = 51/151 (33%), Gaps = 22/151 (14%)
Query: 16 PPPPLKDES----GGGGGPTVPPHQ------EAASGELRGGTERGPG---RCAPSAGS-- 60
PPPP K E GG PPH G GT PG R P G+
Sbjct: 72 PPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQS 131
Query: 61 ----PAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLS-DPPGRAAPPDVGEE 115
P P S GP + GP Q ++R + PPG+ P E
Sbjct: 132 HRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEG 191
Query: 116 RRGGGGTELGPPAPPRPRNG--YQPHRPPGG 144
+ G G P P P G QP PP G
Sbjct: 192 NKPQGPPPPGKPQGPPPAGGNPQQPQAPPAG 222
Score = 40.8 bits (94), Expect = 0.004
Identities = 41/140 (29%), Positives = 52/140 (37%), Gaps = 25/140 (17%)
Query: 16 PPPPLKDE----SGGGGG--PTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRES 69
PPPP K E GG P PP + G +GP P G P +E
Sbjct: 114 PPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGP---PPHPGKPEGPPPQE- 169
Query: 70 PGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRA-APPDVG----EERRGGGGTEL 124
G + S+ P + GP Q + + PPG+ PP G + + G
Sbjct: 170 -GNKSRSARSPPGKPQ---GPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQ 225
Query: 125 GPPAPP------RPRNGYQP 138
GPP PP RP G QP
Sbjct: 226 GPPPPPQGGRPPRPAQGQQP 245
Score = 40.0 bits (92), Expect = 0.007
Identities = 32/114 (28%), Positives = 40/114 (35%), Gaps = 6/114 (5%)
Query: 40 SGELRGGTERG---PGRCAPSAGSPAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHG 96
SG+ G +G P R P G P G G + P + G PQ +
Sbjct: 33 SGKPEGRRPQGGNQPQRPPPPPGKPQ---GPPPQGGNQSQGPPPPPGKPEGRPPQGGNQS 89
Query: 97 EARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRR 150
+ P PP G + G G P P P+ G Q HRPP G R
Sbjct: 90 QGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPER 143
Score = 37.4 bits (85), Expect = 0.047
Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 17/146 (11%)
Query: 3 EMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA 62
+++ E+ FL+ P + + GG P PP G+ +G +G + P
Sbjct: 22 DVSQEESLFLISGKPEGRRPQ--GGNQPQRPP---PPPGKPQGPPPQGGNQSQGPPPPPG 76
Query: 63 AAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEAR-LSDPPGRAAPPDVGEERRGGGG 121
GR P S GP + P Q +++ PPG+ P +GG
Sbjct: 77 KPEGR--PPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPP----QGGNQ 130
Query: 122 TELGPPAP-----PRPRNGYQPHRPP 142
+ PP P P P+ G Q PP
Sbjct: 131 SHRPPPPPGKPERPPPQGGNQSQGPP 156
Score = 35.0 bits (79), Expect = 0.23
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 277 GGSESH--PVPPTAPLTPLLHGEGASQQPRHRGQNRDAPQPYELNTAINCRDEVVSPLPS 334
GG++SH P PP P P G SQ P + P P E N + + R P
Sbjct: 127 GGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGP 186
Query: 335 ALQGPSGSLSAPPAASVISAPPSSSSRHRKRRRTSSKSE 373
Q + PP PP+ + + + + K +
Sbjct: 187 PQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQ 225
Score = 30.8 bits (68), Expect = 4.4
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 19/102 (18%)
Query: 77 SSGPQAQQHRGGG-PQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPR---- 131
S P+ ++ +GG PQ R PPG+ P GG GPP PP
Sbjct: 33 SGKPEGRRPQGGNQPQ-------RPPPPPGKPQGPPPQ-----GGNQSQGPPPPPGKPEG 80
Query: 132 --PRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFKRRR 171
P+ G Q PP G R G G P K R
Sbjct: 81 RPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPER 122
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 47.8 bits (112), Expect = 3e-05
Identities = 48/166 (28%), Positives = 59/166 (35%), Gaps = 26/166 (15%)
Query: 10 PFLVPAPPPPLKDESGGGG-GPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRE 68
P +P P P G G P Q+ + G+ GP G+P A G
Sbjct: 1121 PVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDG 1180
Query: 69 SPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPG----RAAPPDVGEERRGGGGTEL 124
PG P+ QQ G Q G PPG + P GE+ G +
Sbjct: 1181 EPG--------PRGQQGMFG--QKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPM 1230
Query: 125 GPPAPPRPR-----NGYQ-PHRPPG-----GGGGKRRNSCNVGGGG 159
GPP PP PR NG P PPG GG G++ G G
Sbjct: 1231 GPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1276
Score = 43.9 bits (102), Expect = 5e-04
Identities = 41/133 (30%), Positives = 48/133 (36%), Gaps = 22/133 (16%)
Query: 26 GGGGPTVPPHQEAASGELRGGTERG----PGRCAPSAGSPAAAVGRESPGAAATSSSGPQ 81
GG GP PP + GE G PGR P G P A + +PG GPQ
Sbjct: 1057 GGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ-GPPGPAGEKGAPG-----EKGPQ 1110
Query: 82 AQQHRGGGPQAQSHGEARLSDPPGRAAPP-------DVGEERRGGGGTELGPPAPPRPRN 134
R G G L P G A P ++GE + G + G PP P
Sbjct: 1111 GPAGRDG-----VQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPG 1165
Query: 135 GYQPHRPPGGGGG 147
P PG GG
Sbjct: 1166 LQGPVGAPGIAGG 1178
Score = 42.0 bits (97), Expect = 0.002
Identities = 52/186 (27%), Positives = 61/186 (32%), Gaps = 38/186 (20%)
Query: 10 PFLVPAPPPPLKDES-GGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA-AAVGR 67
P P PP P + G GP PP + G + G E+G A + G P A VG
Sbjct: 1229 PMGPPGPPGPRGPQGPNGADGPQGPP---GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGG 1285
Query: 68 ES-----------PGAAAT-SSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPP----- 110
PGAA + GP G P G PPG P
Sbjct: 1286 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV--GFPGDPGPPGEPGPAGQDGV 1343
Query: 111 --------DVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGF 162
D G+ G E GPP PP R PPG G + R G G
Sbjct: 1344 GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRG------PPGAAGAEGRQGEKGAKGEAGA 1397
Query: 163 KHPAFK 168
+ P K
Sbjct: 1398 EGPPGK 1403
Score = 40.0 bits (92), Expect = 0.007
Identities = 45/174 (25%), Positives = 51/174 (29%), Gaps = 26/174 (14%)
Query: 3 EMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA 62
E A + LV PP P G G PP + +G +RGP G P
Sbjct: 442 EPAVVEPGMLVEGPPGP-----AGPAGIMGPPGLQGPTGPPGDPGDRGP------PGRPG 490
Query: 63 AAVGRESPGAAAT-----------SSSGPQAQQHRGGGPQAQSHGEARLSDPPG----RA 107
PG T S GP L PPG
Sbjct: 491 LPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTG 550
Query: 108 APPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGG 161
P VG G E G P P PR P P G G + R + G G G
Sbjct: 551 RPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPG 604
Score = 39.7 bits (91), Expect = 0.009
Identities = 48/168 (28%), Positives = 58/168 (34%), Gaps = 44/168 (26%)
Query: 15 APPPPLKDESGGGGGPTV------PPHQEAASGELRGGTERG-------PGRCAPS--AG 59
A PP D G GP PP + +G+ G ++G PG PS AG
Sbjct: 1307 AKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAG 1366
Query: 60 SPAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPG-------------- 105
P R PGAA G + +Q G + GEA PPG
Sbjct: 1367 PPGPPGKRGPPGAA-----GAEGRQGEKG-----AKGEAGAEGPPGKTGPVGPQGPAGKP 1416
Query: 106 -----RAAPPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGK 148
R P VGE+ G + GPP P P PG G K
Sbjct: 1417 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEK 1464
Score = 39.3 bits (90), Expect = 0.012
Identities = 44/159 (27%), Positives = 54/159 (33%), Gaps = 12/159 (7%)
Query: 13 VPAPPP-----PLKDESGGGGGPTVPPHQEAASGELRGG--TERGPGRCAPSAGSPAAAV 65
+P PP P + G GPT+ + A L+ RGP G P
Sbjct: 497 LPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVG 556
Query: 66 GRESPGAAATSSS-GPQAQQHRGG--GPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGT 122
G S GA S GPQ + G GP + R GR P + G + G
Sbjct: 557 GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDG 616
Query: 123 ELGPPAPPRPRNGYQPHRPPG--GGGGKRRNSCNVGGGG 159
G P R P PPG G G R +G G
Sbjct: 617 LPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRG 655
Score = 38.9 bits (89), Expect = 0.016
Identities = 49/173 (28%), Positives = 56/173 (32%), Gaps = 32/173 (18%)
Query: 26 GGGGPTVPPHQEAASGELRGGTERG-PGRCAP-----------SAGSPAAAVGRESPGAA 73
G GP PP + GE RG PG P + G P A PG
Sbjct: 631 GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPK 690
Query: 74 AT----SSSGPQAQQHRGG-----GPQAQ--------SHGEARLSDPPGRAAPPD-VGEE 115
GP QQ G GPQ G+ L+ PG PP G+E
Sbjct: 691 GNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKE 750
Query: 116 RRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFK 168
+ G LGPP P P P G G + G GF P FK
Sbjct: 751 GQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGF--PGFK 801
Score = 36.2 bits (82), Expect = 0.10
Identities = 40/131 (30%), Positives = 48/131 (36%), Gaps = 22/131 (16%)
Query: 26 GGGGPTVPPHQEAASGELRG-----GTERGPGRCAP--SAGSPAAAVGRESPGAAATSSS 78
G GPT P +GE +G G PGR P S G P GA +
Sbjct: 829 GRAGPTGDPGPSGQAGE-KGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGK 887
Query: 79 -GPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPRNGYQ 137
GP+ Q+ GP G P G+ P +G G + GPP PP R
Sbjct: 888 PGPRGQR----GPTGP-RGSRGARGPTGKPGP-------KGTSGGD-GPPGPPGERGPQG 934
Query: 138 PHRPPGGGGGK 148
P P G G K
Sbjct: 935 PQGPVGFPGPK 945
Score = 36.2 bits (82), Expect = 0.10
Identities = 39/135 (28%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAA 73
P PP P+ G G PP ++ +G++ G PG P G + P A
Sbjct: 1203 PGPPGPI-----GLQGLPGPPGEKGENGDV--GPMGPPG--------PPGPRGPQGPNGA 1247
Query: 74 ATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPR 133
P + GG + GEA PPG A ER G E GPP P
Sbjct: 1248 DGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPP 1305
Query: 134 NGYQPHRPPGGGGGK 148
PPG G K
Sbjct: 1306 GA---KGPPGDDGPK 1317
Score = 34.3 bits (77), Expect = 0.40
Identities = 34/99 (34%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 18 PPLKDESGGGG--GPTVPPHQEAASGELRG--GTERGPGRCAPSAGSPAAAVGRESPGAA 73
P K E G G G PP ++ G+ RG GT+ PG G P A PG
Sbjct: 1458 PGSKGEKGHPGLIGLIGPPGEQGEKGD-RGLPGTQGSPG-AKGDGGIPGPAGPLGPPGPP 1515
Query: 74 ATSSSGPQAQQHRGG--GPQAQSHGEARLSDPPGRAAPP 110
GPQ + G GP Q G++ L PPG PP
Sbjct: 1516 GLP--GPQGPKGNKGSTGPAGQK-GDSGLPGPPGSPGPP 1551
Score = 32.7 bits (73), Expect = 1.2
Identities = 50/179 (27%), Positives = 59/179 (32%), Gaps = 41/179 (22%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAP-----SAGSPA-------- 62
P PP K G G ++ A GE G E PG+ P AG P
Sbjct: 1368 PGPPGKRGPPGAAGAEGRQGEKGAKGE--AGAEGPPGKTGPVGPQGPAGKPGPEGLRGIP 1425
Query: 63 AAVGRES-PGAAATSSS----GPQAQQHRGGGPQAQSH----GEARLSDPPG-------R 106
VG + PGAA GP G P ++ G L PPG R
Sbjct: 1426 GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDR 1485
Query: 107 AAPPDVGEE-RRGGGGTE-----LGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGG 159
P G +G GG LGPP PP G + P G G + G G
Sbjct: 1486 GLPGTQGSPGAKGDGGIPGPAGPLGPPGPP----GLPGPQGPKGNKGSTGPAGQKGDSG 1540
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 47.8 bits (112), Expect = 3e-05
Identities = 48/166 (28%), Positives = 59/166 (35%), Gaps = 26/166 (15%)
Query: 10 PFLVPAPPPPLKDESGGGG-GPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRE 68
P +P P P G G P Q+ + G+ GP G+P A G
Sbjct: 1070 PVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDG 1129
Query: 69 SPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPG----RAAPPDVGEERRGGGGTEL 124
PG P+ QQ G Q G PPG + P GE+ G +
Sbjct: 1130 EPG--------PRGQQGMFG--QKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPM 1179
Query: 125 GPPAPPRPR-----NGYQ-PHRPPG-----GGGGKRRNSCNVGGGG 159
GPP PP PR NG P PPG GG G++ G G
Sbjct: 1180 GPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1225
Score = 43.9 bits (102), Expect = 5e-04
Identities = 41/133 (30%), Positives = 48/133 (36%), Gaps = 22/133 (16%)
Query: 26 GGGGPTVPPHQEAASGELRGGTERG----PGRCAPSAGSPAAAVGRESPGAAATSSSGPQ 81
GG GP PP + GE G PGR P G P A + +PG GPQ
Sbjct: 1006 GGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ-GPPGPAGEKGAPG-----EKGPQ 1059
Query: 82 AQQHRGGGPQAQSHGEARLSDPPGRAAPP-------DVGEERRGGGGTELGPPAPPRPRN 134
R G G L P G A P ++GE + G + G PP P
Sbjct: 1060 GPAGRDG-----VQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPG 1114
Query: 135 GYQPHRPPGGGGG 147
P PG GG
Sbjct: 1115 LQGPVGAPGIAGG 1127
Score = 42.0 bits (97), Expect = 0.002
Identities = 52/186 (27%), Positives = 61/186 (32%), Gaps = 38/186 (20%)
Query: 10 PFLVPAPPPPLKDES-GGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA-AAVGR 67
P P PP P + G GP PP + G + G E+G A + G P A VG
Sbjct: 1178 PMGPPGPPGPRGPQGPNGADGPQGPP---GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGG 1234
Query: 68 ES-----------PGAAAT-SSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPP----- 110
PGAA + GP G P G PPG P
Sbjct: 1235 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV--GFPGDPGPPGEPGPAGQDGV 1292
Query: 111 --------DVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGF 162
D G+ G E GPP PP R PPG G + R G G
Sbjct: 1293 GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRG------PPGAAGAEGRQGEKGAKGEAGA 1346
Query: 163 KHPAFK 168
+ P K
Sbjct: 1347 EGPPGK 1352
Score = 40.0 bits (92), Expect = 0.007
Identities = 45/174 (25%), Positives = 51/174 (29%), Gaps = 26/174 (14%)
Query: 3 EMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA 62
E A + LV PP P G G PP + +G +RGP G P
Sbjct: 391 EPAVVEPGMLVEGPPGP-----AGPAGIMGPPGLQGPTGPPGDPGDRGP------PGRPG 439
Query: 63 AAVGRESPGAAAT-----------SSSGPQAQQHRGGGPQAQSHGEARLSDPPG----RA 107
PG T S GP L PPG
Sbjct: 440 LPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTG 499
Query: 108 APPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGG 161
P VG G E G P P PR P P G G + R + G G G
Sbjct: 500 RPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPG 553
Score = 39.7 bits (91), Expect = 0.009
Identities = 48/168 (28%), Positives = 58/168 (34%), Gaps = 44/168 (26%)
Query: 15 APPPPLKDESGGGGGPTV------PPHQEAASGELRGGTERG-------PGRCAPS--AG 59
A PP D G GP PP + +G+ G ++G PG PS AG
Sbjct: 1256 AKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAG 1315
Query: 60 SPAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPG-------------- 105
P R PGAA G + +Q G + GEA PPG
Sbjct: 1316 PPGPPGKRGPPGAA-----GAEGRQGEKG-----AKGEAGAEGPPGKTGPVGPQGPAGKP 1365
Query: 106 -----RAAPPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGK 148
R P VGE+ G + GPP P P PG G K
Sbjct: 1366 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEK 1413
Score = 39.3 bits (90), Expect = 0.012
Identities = 44/159 (27%), Positives = 54/159 (33%), Gaps = 12/159 (7%)
Query: 13 VPAPPP-----PLKDESGGGGGPTVPPHQEAASGELRGG--TERGPGRCAPSAGSPAAAV 65
+P PP P + G GPT+ + A L+ RGP G P
Sbjct: 446 LPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVG 505
Query: 66 GRESPGAAATSSS-GPQAQQHRGG--GPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGT 122
G S GA S GPQ + G GP + R GR P + G + G
Sbjct: 506 GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDG 565
Query: 123 ELGPPAPPRPRNGYQPHRPPG--GGGGKRRNSCNVGGGG 159
G P R P PPG G G R +G G
Sbjct: 566 LPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRG 604
Score = 38.9 bits (89), Expect = 0.016
Identities = 49/173 (28%), Positives = 56/173 (32%), Gaps = 32/173 (18%)
Query: 26 GGGGPTVPPHQEAASGELRGGTERG-PGRCAP-----------SAGSPAAAVGRESPGAA 73
G GP PP + GE RG PG P + G P A PG
Sbjct: 580 GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPK 639
Query: 74 AT----SSSGPQAQQHRGG-----GPQAQ--------SHGEARLSDPPGRAAPPD-VGEE 115
GP QQ G GPQ G+ L+ PG PP G+E
Sbjct: 640 GNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKE 699
Query: 116 RRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFK 168
+ G LGPP P P P G G + G GF P FK
Sbjct: 700 GQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGF--PGFK 750
Score = 36.2 bits (82), Expect = 0.10
Identities = 40/131 (30%), Positives = 48/131 (36%), Gaps = 22/131 (16%)
Query: 26 GGGGPTVPPHQEAASGELRG-----GTERGPGRCAP--SAGSPAAAVGRESPGAAATSSS 78
G GPT P +GE +G G PGR P S G P GA +
Sbjct: 778 GRAGPTGDPGPSGQAGE-KGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGK 836
Query: 79 -GPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPRNGYQ 137
GP+ Q+ GP G P G+ P +G G + GPP PP R
Sbjct: 837 PGPRGQR----GPTGP-RGSRGARGPTGKPGP-------KGTSGGD-GPPGPPGERGPQG 883
Query: 138 PHRPPGGGGGK 148
P P G G K
Sbjct: 884 PQGPVGFPGPK 894
Score = 36.2 bits (82), Expect = 0.10
Identities = 39/135 (28%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAA 73
P PP P+ G G PP ++ +G++ G PG P G + P A
Sbjct: 1152 PGPPGPI-----GLQGLPGPPGEKGENGDV--GPMGPPG--------PPGPRGPQGPNGA 1196
Query: 74 ATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPR 133
P + GG + GEA PPG A ER G E GPP P
Sbjct: 1197 DGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPP 1254
Query: 134 NGYQPHRPPGGGGGK 148
PPG G K
Sbjct: 1255 GA---KGPPGDDGPK 1266
Score = 34.3 bits (77), Expect = 0.40
Identities = 34/99 (34%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 18 PPLKDESGGGG--GPTVPPHQEAASGELRG--GTERGPGRCAPSAGSPAAAVGRESPGAA 73
P K E G G G PP ++ G+ RG GT+ PG G P A PG
Sbjct: 1407 PGSKGEKGHPGLIGLIGPPGEQGEKGD-RGLPGTQGSPG-AKGDGGIPGPAGPLGPPGPP 1464
Query: 74 ATSSSGPQAQQHRGG--GPQAQSHGEARLSDPPGRAAPP 110
GPQ + G GP Q G++ L PPG PP
Sbjct: 1465 GLP--GPQGPKGNKGSTGPAGQK-GDSGLPGPPGSPGPP 1500
Score = 32.7 bits (73), Expect = 1.2
Identities = 50/179 (27%), Positives = 59/179 (32%), Gaps = 41/179 (22%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAP-----SAGSPA-------- 62
P PP K G G ++ A GE G E PG+ P AG P
Sbjct: 1317 PGPPGKRGPPGAAGAEGRQGEKGAKGE--AGAEGPPGKTGPVGPQGPAGKPGPEGLRGIP 1374
Query: 63 AAVGRES-PGAAATSSS----GPQAQQHRGGGPQAQSH----GEARLSDPPG-------R 106
VG + PGAA GP G P ++ G L PPG R
Sbjct: 1375 GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDR 1434
Query: 107 AAPPDVGEE-RRGGGGTE-----LGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGG 159
P G +G GG LGPP PP G + P G G + G G
Sbjct: 1435 GLPGTQGSPGAKGDGGIPGPAGPLGPPGPP----GLPGPQGPKGNKGSTGPAGQKGDSG 1489
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 47.8 bits (112), Expect = 3e-05
Identities = 48/166 (28%), Positives = 59/166 (35%), Gaps = 26/166 (15%)
Query: 10 PFLVPAPPPPLKDESGGGG-GPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRE 68
P +P P P G G P Q+ + G+ GP G+P A G
Sbjct: 1109 PVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDG 1168
Query: 69 SPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPG----RAAPPDVGEERRGGGGTEL 124
PG P+ QQ G Q G PPG + P GE+ G +
Sbjct: 1169 EPG--------PRGQQGMFG--QKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPM 1218
Query: 125 GPPAPPRPR-----NGYQ-PHRPPG-----GGGGKRRNSCNVGGGG 159
GPP PP PR NG P PPG GG G++ G G
Sbjct: 1219 GPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1264
Score = 43.9 bits (102), Expect = 5e-04
Identities = 41/133 (30%), Positives = 48/133 (36%), Gaps = 22/133 (16%)
Query: 26 GGGGPTVPPHQEAASGELRGGTERG----PGRCAPSAGSPAAAVGRESPGAAATSSSGPQ 81
GG GP PP + GE G PGR P G P A + +PG GPQ
Sbjct: 1045 GGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ-GPPGPAGEKGAPG-----EKGPQ 1098
Query: 82 AQQHRGGGPQAQSHGEARLSDPPGRAAPP-------DVGEERRGGGGTELGPPAPPRPRN 134
R G G L P G A P ++GE + G + G PP P
Sbjct: 1099 GPAGRDG-----VQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPG 1153
Query: 135 GYQPHRPPGGGGG 147
P PG GG
Sbjct: 1154 LQGPVGAPGIAGG 1166
Score = 42.0 bits (97), Expect = 0.002
Identities = 52/186 (27%), Positives = 61/186 (32%), Gaps = 38/186 (20%)
Query: 10 PFLVPAPPPPLKDES-GGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA-AAVGR 67
P P PP P + G GP PP + G + G E+G A + G P A VG
Sbjct: 1217 PMGPPGPPGPRGPQGPNGADGPQGPP---GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGG 1273
Query: 68 ES-----------PGAAAT-SSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPP----- 110
PGAA + GP G P G PPG P
Sbjct: 1274 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV--GFPGDPGPPGEPGPAGQDGV 1331
Query: 111 --------DVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGF 162
D G+ G E GPP PP R PPG G + R G G
Sbjct: 1332 GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRG------PPGAAGAEGRQGEKGAKGEAGA 1385
Query: 163 KHPAFK 168
+ P K
Sbjct: 1386 EGPPGK 1391
Score = 40.0 bits (92), Expect = 0.007
Identities = 45/174 (25%), Positives = 51/174 (29%), Gaps = 26/174 (14%)
Query: 3 EMAAEKEPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPA 62
E A + LV PP P G G PP + +G +RGP G P
Sbjct: 430 EPAVVEPGMLVEGPPGP-----AGPAGIMGPPGLQGPTGPPGDPGDRGP------PGRPG 478
Query: 63 AAVGRESPGAAAT-----------SSSGPQAQQHRGGGPQAQSHGEARLSDPPG----RA 107
PG T S GP L PPG
Sbjct: 479 LPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTG 538
Query: 108 APPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGG 161
P VG G E G P P PR P P G G + R + G G G
Sbjct: 539 RPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPG 592
Score = 39.7 bits (91), Expect = 0.009
Identities = 48/168 (28%), Positives = 58/168 (34%), Gaps = 44/168 (26%)
Query: 15 APPPPLKDESGGGGGPTV------PPHQEAASGELRGGTERG-------PGRCAPS--AG 59
A PP D G GP PP + +G+ G ++G PG PS AG
Sbjct: 1295 AKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAG 1354
Query: 60 SPAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPG-------------- 105
P R PGAA G + +Q G + GEA PPG
Sbjct: 1355 PPGPPGKRGPPGAA-----GAEGRQGEKG-----AKGEAGAEGPPGKTGPVGPQGPAGKP 1404
Query: 106 -----RAAPPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGK 148
R P VGE+ G + GPP P P PG G K
Sbjct: 1405 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEK 1452
Score = 39.3 bits (90), Expect = 0.012
Identities = 44/159 (27%), Positives = 54/159 (33%), Gaps = 12/159 (7%)
Query: 13 VPAPPP-----PLKDESGGGGGPTVPPHQEAASGELRGG--TERGPGRCAPSAGSPAAAV 65
+P PP P + G GPT+ + A L+ RGP G P
Sbjct: 485 LPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVG 544
Query: 66 GRESPGAAATSSS-GPQAQQHRGG--GPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGT 122
G S GA S GPQ + G GP + R GR P + G + G
Sbjct: 545 GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDG 604
Query: 123 ELGPPAPPRPRNGYQPHRPPG--GGGGKRRNSCNVGGGG 159
G P R P PPG G G R +G G
Sbjct: 605 LPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRG 643
Score = 38.9 bits (89), Expect = 0.016
Identities = 49/173 (28%), Positives = 56/173 (32%), Gaps = 32/173 (18%)
Query: 26 GGGGPTVPPHQEAASGELRGGTERG-PGRCAP-----------SAGSPAAAVGRESPGAA 73
G GP PP + GE RG PG P + G P A PG
Sbjct: 619 GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPK 678
Query: 74 AT----SSSGPQAQQHRGG-----GPQAQ--------SHGEARLSDPPGRAAPPD-VGEE 115
GP QQ G GPQ G+ L+ PG PP G+E
Sbjct: 679 GNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKE 738
Query: 116 RRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHPAFK 168
+ G LGPP P P P G G + G GF P FK
Sbjct: 739 GQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGF--PGFK 789
Score = 36.2 bits (82), Expect = 0.10
Identities = 40/131 (30%), Positives = 48/131 (36%), Gaps = 22/131 (16%)
Query: 26 GGGGPTVPPHQEAASGELRG-----GTERGPGRCAP--SAGSPAAAVGRESPGAAATSSS 78
G GPT P +GE +G G PGR P S G P GA +
Sbjct: 817 GRAGPTGDPGPSGQAGE-KGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGK 875
Query: 79 -GPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPRNGYQ 137
GP+ Q+ GP G P G+ P +G G + GPP PP R
Sbjct: 876 PGPRGQR----GPTGP-RGSRGARGPTGKPGP-------KGTSGGD-GPPGPPGERGPQG 922
Query: 138 PHRPPGGGGGK 148
P P G G K
Sbjct: 923 PQGPVGFPGPK 933
Score = 36.2 bits (82), Expect = 0.10
Identities = 39/135 (28%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAA 73
P PP P+ G G PP ++ +G++ G PG P G + P A
Sbjct: 1191 PGPPGPI-----GLQGLPGPPGEKGENGDV--GPMGPPG--------PPGPRGPQGPNGA 1235
Query: 74 ATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPR 133
P + GG + GEA PPG A ER G E GPP P
Sbjct: 1236 DGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPP 1293
Query: 134 NGYQPHRPPGGGGGK 148
PPG G K
Sbjct: 1294 GA---KGPPGDDGPK 1305
Score = 34.3 bits (77), Expect = 0.40
Identities = 34/99 (34%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 18 PPLKDESGGGG--GPTVPPHQEAASGELRG--GTERGPGRCAPSAGSPAAAVGRESPGAA 73
P K E G G G PP ++ G+ RG GT+ PG G P A PG
Sbjct: 1446 PGSKGEKGHPGLIGLIGPPGEQGEKGD-RGLPGTQGSPG-AKGDGGIPGPAGPLGPPGPP 1503
Query: 74 ATSSSGPQAQQHRGG--GPQAQSHGEARLSDPPGRAAPP 110
GPQ + G GP Q G++ L PPG PP
Sbjct: 1504 GLP--GPQGPKGNKGSTGPAGQK-GDSGLPGPPGSPGPP 1539
Score = 32.7 bits (73), Expect = 1.2
Identities = 50/179 (27%), Positives = 59/179 (32%), Gaps = 41/179 (22%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAP-----SAGSPA-------- 62
P PP K G G ++ A GE G E PG+ P AG P
Sbjct: 1356 PGPPGKRGPPGAAGAEGRQGEKGAKGE--AGAEGPPGKTGPVGPQGPAGKPGPEGLRGIP 1413
Query: 63 AAVGRES-PGAAATSSS----GPQAQQHRGGGPQAQSH----GEARLSDPPG-------R 106
VG + PGAA GP G P ++ G L PPG R
Sbjct: 1414 GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDR 1473
Query: 107 AAPPDVGEE-RRGGGGTE-----LGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGG 159
P G +G GG LGPP PP G + P G G + G G
Sbjct: 1474 GLPGTQGSPGAKGDGGIPGPAGPLGPPGPP----GLPGPQGPKGNKGSTGPAGQKGDSG 1528
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 47.8 bits (112), Expect = 3e-05
Identities = 49/155 (31%), Positives = 57/155 (36%), Gaps = 11/155 (7%)
Query: 11 FLVPAPPPPLKDESGGGG--GPTVPPHQEAASGEL-RGGTERGPG-RCAPSAGSPAAAVG 66
F PA P + E G G G P A+GE R G GPG R P GSP
Sbjct: 490 FRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMP--GSPGGPGS 547
Query: 67 RESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGP 126
PG + + GP+ Q G P G P ER G GG GP
Sbjct: 548 DGKPGPPGSQGESGRPGPPGPSGPRGQP-GVMGFPGPKGNDGAPGKNGERGGPGGP--GP 604
Query: 127 PAPPRPRNGYQPHRPPG--GGGGKRRNSCNVGGGG 159
PP P PPG G GG + ++ G G
Sbjct: 605 QGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG 639
Score = 44.7 bits (104), Expect = 3e-04
Identities = 49/175 (28%), Positives = 57/175 (32%), Gaps = 30/175 (17%)
Query: 18 PPLKDESGGGGGPTVPPHQ------EAASGELRGGTERGPGRCAPSAGSPAA--AVGRES 69
PP + G GP PP + GE G GP G P A G++
Sbjct: 700 PPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDG 759
Query: 70 PGAAA-----TSSSGPQAQQHRGGGPQAQ-------SHGEARLSDPPGRAAPPDV----- 112
P +G + GG P S GE + PPG A P
Sbjct: 760 PRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNG 819
Query: 113 ---GEERRGGGGT--ELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGF 162
G+ RG G E GPP P G P PPG G K G G GF
Sbjct: 820 EPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGF 874
Score = 44.3 bits (103), Expect = 4e-04
Identities = 42/163 (25%), Positives = 54/163 (33%), Gaps = 23/163 (14%)
Query: 18 PPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCA----------------PSAGSP 61
PP GG GP PP + GE G+ GPG P P
Sbjct: 838 PPGVAGPPGGSGPAGPPGPQGVKGE--RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGP 895
Query: 62 AAAVGRESPGAAATSSSGPQA---QQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRG 118
+ + G++ P A ++ P + +G Q G PPG AP +G
Sbjct: 896 SGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPG--APGPLGIAGIT 953
Query: 119 GGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGG 161
G GPP P PR P G G N + G G
Sbjct: 954 GARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPG 996
Score = 42.0 bits (97), Expect = 0.002
Identities = 43/150 (28%), Positives = 53/150 (35%), Gaps = 12/150 (8%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAP--SAGSPAAAVGRESPG 71
P P P + G G P +P A + G++ PG P +AG P + + G
Sbjct: 296 PGPMGP-RGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVG 354
Query: 72 AAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPR 131
A + S Q GPQ G A PPG PP G GG E+GP P
Sbjct: 355 PAGSPGSNGAPGQRGEPGPQ----GHAGAQGPPG---PP--GINGSPGGKGEMGPAGIPG 405
Query: 132 PRNGYQPHRPPGGGGGKRRNSCNVGGGGGG 161
PPG G G G G
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPG 435
Score = 42.0 bits (97), Expect = 0.002
Identities = 36/129 (27%), Positives = 43/129 (33%), Gaps = 16/129 (12%)
Query: 26 GGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAAA-------TSSS 78
GG GP PP + +G GPG G P + PG
Sbjct: 600 GGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEP 659
Query: 79 GPQAQQHRGGGPQAQSH-GEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPRNGYQ 137
GP+ G P + G PPG A P + RGG GPP P +
Sbjct: 660 GPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGL----RGGA----GPPGPEGGKGAAG 711
Query: 138 PHRPPGGGG 146
P PPG G
Sbjct: 712 PPGPPGAAG 720
Score = 42.0 bits (97), Expect = 0.002
Identities = 46/162 (28%), Positives = 51/162 (31%), Gaps = 15/162 (9%)
Query: 15 APPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPG--- 71
AP P G G PP A G G GP +AG P +PG
Sbjct: 667 APGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQG 726
Query: 72 ----AAATSSSGPQAQQHRGGGPQAQS-------HGEARLSDPPGRAAPP-DVGEERRGG 119
S GP+ + GGP A G PPG A P D GE G
Sbjct: 727 MPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPG 786
Query: 120 GGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGG 161
GP P R P P G G +N G G G
Sbjct: 787 LPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERG 828
Score = 40.8 bits (94), Expect = 0.004
Identities = 37/129 (28%), Positives = 45/129 (34%), Gaps = 13/129 (10%)
Query: 21 KDESGGGGGPTVPPHQEAAS--GELRGGTERGPGRCAPSAGSPAAAVGRESPGAAATSSS 78
+ E+G G P P H G +RG A AG+P A R +PG
Sbjct: 1034 RGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP-----Q 1088
Query: 79 GPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDV-GEERRGGGGTELGPPAPPRPRNGYQ 137
GP RG + G A + G P G G +G P P PR
Sbjct: 1089 GP-----RGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVG 1143
Query: 138 PHRPPGGGG 146
P PPG G
Sbjct: 1144 PSGPPGKDG 1152
Score = 37.0 bits (84), Expect = 0.061
Identities = 42/142 (29%), Positives = 48/142 (33%), Gaps = 25/142 (17%)
Query: 14 PAPPPPL----KDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAV---G 66
P PP P+ K G GP P +G +GP G AA
Sbjct: 1049 PGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGH 1108
Query: 67 RESPG-AAATSSSGPQAQQHRGGGP-QAQSHGEARLSDPPGR---------AAPP----- 110
R PG A S GP QQ G P A G S PPG+ PP
Sbjct: 1109 RGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGN 1168
Query: 111 --DVGEERRGGGGTELGPPAPP 130
+ G E G + GPP PP
Sbjct: 1169 RGERGSEGSPGHPGQPGPPGPP 1190
Score = 33.5 bits (75), Expect = 0.67
Identities = 41/159 (25%), Positives = 52/159 (32%), Gaps = 30/159 (18%)
Query: 9 EPFLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRE 68
+P P PP + G G P PP +G+ G PG S GSP
Sbjct: 90 QPPTAPTRPPNGQGPQGPKGDPG-PPGIPGRNGD--PGIPGQPG----SPGSPGP----- 137
Query: 69 SPGAAATSSSGPQ-------AQQHRGGGPQAQSHGEARLSDPPGRAAPPDV--------- 112
PG + +GPQ + + G G + PPG PP
Sbjct: 138 -PGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGS 196
Query: 113 -GEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRR 150
G + G + GP PP P P P G G R
Sbjct: 197 PGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGR 235
Score = 32.7 bits (73), Expect = 1.2
Identities = 45/173 (26%), Positives = 54/173 (31%), Gaps = 34/173 (19%)
Query: 16 PPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAAAT 75
P PP S G GP P A G +G GSP A +PG
Sbjct: 890 PGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGI 949
Query: 76 S-------------------SSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDV---- 112
+ S GPQ + G P A +G + PPG P +
Sbjct: 950 AGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGA--NGLSGERGPPGPQGLPGLAGTA 1007
Query: 113 GEERRGGGGTELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHP 165
GE R G G P R+G PGG G + N G G P
Sbjct: 1008 GEPGRDGNPGSDGLPG----RDG-----SPGGKGDRGENGSPGAPGAPGHPGP 1051
Score = 32.3 bits (72), Expect = 1.5
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 18 PPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCA-PSAGSPAAAVGRESPGAAATS 76
PP KD + G GP PP GE G+E PG P P A G G A +
Sbjct: 1147 PPGKDGTSGHPGPIGPPGPRGNRGE--RGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAA 1204
Query: 77 SSGPQAQQHRGGGP 90
+G ++ G P
Sbjct: 1205 IAGIGGEKAGGFAP 1218
>gi|33636756 MAP/microtubule affinity-regulating kinase 4 [Homo
sapiens]
Length = 688
Score = 47.8 bits (112), Expect = 3e-05
Identities = 49/171 (28%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 254 SPLKTGR---KRHRHRGQHHQQQQAAGGSESHPVPPTAPLTPLLHGEGASQQPRHRGQNR 310
SP TG K R G+ + + GS S +PP++P+ H ++ P R +
Sbjct: 438 SPTSTGEAELKEERLPGR--KASCSTAGSGSRGLPPSSPMVSSAHNPNKAEIPERRKDST 495
Query: 311 DAPQ--PYELNTAIN---CRD----EVVSPLPSALQGPSGSLSAPPAA-SVISAPPSSSS 360
P P + T N C + E S LP+ + SG+ PPA+ S S P S
Sbjct: 496 STPNNLPPSMMTRRNTYVCTERPGAERPSLLPNGKENSSGTPRVPPASPSSHSLAPPSGE 555
Query: 361 RHRKRRRTSSKS--------EAGARGGGQGSKEKGRGSWGGRHHHHHPLPA 403
R R R ++ +S + A GGG G + G + H PLPA
Sbjct: 556 RSRLARGSTIRSTFHGGQVRDRRAGGGGGGGVQNGPPASPTLAHEAAPLPA 606
Score = 33.9 bits (76), Expect = 0.52
Identities = 40/166 (24%), Positives = 61/166 (36%), Gaps = 23/166 (13%)
Query: 22 DESGGGGGPTVPPHQEAASGELRGGTERGPGRCA--PSAGSPAAAVGRESPGAAATSSSG 79
D G P P ++GE ER PGR A +AGS + + SP ++ +
Sbjct: 424 DFCGPSPAPLHPKRSPTSTGEAELKEERLPGRKASCSTAGSGSRGLPPSSPMVSSAHNPN 483
Query: 80 ----PQAQQHRGGGP------QAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAP 129
P+ ++ P ++ PG P + + GT PPA
Sbjct: 484 KAEIPERRKDSTSTPNNLPPSMMTRRNTYVCTERPGAERPSLLPNGKENSSGTPRVPPAS 543
Query: 130 P-----RPRNGYQPHRPPGG------GGGKRRNSCNVGGGGGGFKH 164
P P +G + G GG+ R+ GGGGGG ++
Sbjct: 544 PSSHSLAPPSGERSRLARGSTIRSTFHGGQVRDRRAGGGGGGGVQN 589
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 47.4 bits (111), Expect = 5e-05
Identities = 51/173 (29%), Positives = 60/173 (34%), Gaps = 29/173 (16%)
Query: 14 PAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPGRCAPSA--GSPAAAVGRESPG 71
P PP P K SG G P +P G G PG G P A + PG
Sbjct: 1127 PGPPGP-KGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPG 1185
Query: 72 AAATSSSGP------QAQQHRGG-----------GPQAQS--HGEARLSDPPGRAAPPDV 112
+ GP Q+ GG GP+ + HG + PPG P
Sbjct: 1186 QPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGP 1245
Query: 113 GEERRGGGGTELGPPAPPRPRNGYQ----PHRPPG--GGGGKRRNSCNVGGGG 159
E G GPP P P G+Q P PPG G GG + N G G
Sbjct: 1246 ALEGPKGNPGPQGPPGRPGP-TGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPG 1297
Score = 34.7 bits (78), Expect = 0.30
Identities = 38/152 (25%), Positives = 49/152 (32%), Gaps = 10/152 (6%)
Query: 21 KDESGGGGGPTVP-------PHQEAASGELRGGTERGPGRCAPSAGSPAAAVGRESPGAA 73
K E G G P +P P G E+G A + G P + PG
Sbjct: 599 KGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQT 658
Query: 74 ATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPR 133
T P + G G+ L PG+ P + + G +G P PP P+
Sbjct: 659 ITQPGKPGLPGNPGRDGDVGLPGDPGL---PGQPGLPGIPGSKGEPGIPGIGLPGPPGPK 715
Query: 134 NGYQPHRPPGGGGGKRRNSCNVGGGGGGFKHP 165
PPG G R G GF P
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGP 747
Score = 33.5 bits (75), Expect = 0.67
Identities = 46/170 (27%), Positives = 58/170 (34%), Gaps = 41/170 (24%)
Query: 14 PAPP--PPLKDESG-----------GGGGPTVPPHQEAASGELRGGTERGPGRCAPSAGS 60
P PP P +K E G G G PP + G GP P
Sbjct: 146 PGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPG-PPGLMG 204
Query: 61 PAAAVGRESP-GAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERR-- 117
P G P G + GP+ ++ GE L PPG P + E++R
Sbjct: 205 PPGPPGLPGPKGNMGLNFQGPKGEK-----------GEQGLQGPPG--PPGQISEQKRPI 251
Query: 118 ------GGGGT--ELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGG 159
G G + GPP PP R P PPGG G++ G G
Sbjct: 252 DVEFQKGDQGLPGDRGPPGPPGIRG---PPGPPGGEKGEKGEQGEPGKRG 298
Score = 32.7 bits (73), Expect = 1.2
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 11/119 (9%)
Query: 21 KDESGGGG--GPTVPPHQEAASG-----ELRGGTERGPGRCAPSAGSPAAAVGRESPGAA 73
K E G G GP PP Q + E + G + PG P P G P
Sbjct: 226 KGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPG--PPGIRGPPGPPGG 283
Query: 74 ATSSSGPQAQQHRGGGPQAQS-HGEARLSDPPGRAA-PPDVGEERRGGGGTELGPPAPP 130
G Q + + G P +G+ + PG P + G + G + GPP PP
Sbjct: 284 EKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPP 342
Score = 30.8 bits (68), Expect = 4.4
Identities = 45/157 (28%), Positives = 51/157 (32%), Gaps = 36/157 (22%)
Query: 17 PPPLKDESGGGGGPTVPPHQEAASGELRGGT-----ERG-------PGRCAPSAGSPAAA 64
PP L G G P +P H A + G ERG PG P G P
Sbjct: 94 PPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPP-GPPGIP 152
Query: 65 VGRESPGAAATSS-SGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGGGGTE 123
+ PG+ SS GP+ G P Q L P G P
Sbjct: 153 GMKGEPGSIIMSSLPGPKGNPGYPGPPGIQG-----LPGPTGIPGP-------------- 193
Query: 124 LGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGGG 160
+GPP PP P PPG G K N G G
Sbjct: 194 IGPPGPPGLMG---PPGPPGLPGPKGNMGLNFQGPKG 227
Score = 30.0 bits (66), Expect = 7.5
Identities = 37/131 (28%), Positives = 43/131 (32%), Gaps = 17/131 (12%)
Query: 11 FLVPAPPPP-----LKDESGGGG-----GPTVPPHQEAASGELRGGTERGP-GRCAPSAG 59
F +P PP P K G G GP PP + G + GP G+ P
Sbjct: 753 FALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGP 812
Query: 60 SPAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEERRGG 119
+G + P GP Q G P GE PPG P GE G
Sbjct: 813 PGLPGIGVQGP-PGPPGIPGPIGQPGLHGIP-----GEKGDPGPPGLDVPGPPGERGSPG 866
Query: 120 GGTELGPPAPP 130
GP PP
Sbjct: 867 IPGAPGPIGPP 877
>gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens]
Length = 949
Score = 47.4 bits (111), Expect = 5e-05
Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 21/156 (13%)
Query: 11 FLVPAPPPPLKDESGGGGGPTVPPHQEAASGELRGGTERGPG--RCAP----SAGSPAAA 64
F PAP PP+ P P G GT RGPG C +A P
Sbjct: 340 FWAPAPLPPV---------PPPVPSGTREDGSREEGTRRGPGCLECRDFRLRAAHLPLLT 390
Query: 65 VGRESPGAAATSSSGPQAQQHRGGGPQAQS---HGEARLSDPPGRAAPPDVGEERRGGGG 121
+ S + S + HR +A HG + PPGRA P G
Sbjct: 391 IEPPSDSSVDLSDRSDRGSVHRQLVYEADGCSPHGTLKHKGPPGRAPIPHRHYPAPEGPA 450
Query: 122 TELGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGG 157
P PP P +G P G GG+R C G
Sbjct: 451 PAPPGPLPPAPNSGTGPS---GVAGGRRLGKCEAAG 483
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,207,985
Number of Sequences: 37866
Number of extensions: 2332684
Number of successful extensions: 19005
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 1386
Number of HSP's that attempted gapping in prelim test: 12651
Number of HSP's gapped (non-prelim): 6483
length of query: 689
length of database: 18,247,518
effective HSP length: 109
effective length of query: 580
effective length of database: 14,120,124
effective search space: 8189671920
effective search space used: 8189671920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.