Guide to the Human Genome
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Name: BCDIN3D Sequence: fasta or formatted (292aa) NCBI GI: 32171233
Description:

BCDIN3 domain containing

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         16           3
 C cysteine            3.4         10           2
 D aspartate           5.5         16           1
 E glutamate           6.8         20           3
 F phenylalanine       6.5         19           1
 G glycine             6.2         18           2
 H histidine           4.5         13           1
 I isoleucine          4.5         13           1
 K lysine              4.1         12           1
 L leucine            13.7         40           3
 M methionine          2.1          6           1
 N asparagine          2.7          8           1
 P proline             6.8         20           2
 Q glutamine           3.8         11           1
 R arginine            6.5         19           2
 S serine              7.2         21           2
 T threonine           3.8         11           1
 V valine              3.8         11           1
 W tryptophan          1.4          4           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   BCDIN3 domain containing 
MEPCE                 0.041   bin3, bicoid-interacting 3 
RFT1                  0.012   RFT1 homolog 
FAM47C                0.009   hypothetical protein LOC442444 
COX3                  0.007   cytochrome c oxidase subunit III 
C1orf66               0.005   hypothetical protein LOC51093 isoform 1 
CTSA                  0.005   cathepsin A isoform a precursor 
CTSA                  0.005   cathepsin A isoform b precursor 
RIC8A                 0.005   resistance to inhibitors of cholinesterase 8 homolog...
COX3                  0.005   cytochrome c oxidase subunit III 
PSAPL1                0.005   prosaposin-like protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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