Guide to the Human Genome
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Name: KIAA0495 Sequence: fasta or formatted (201aa) NCBI GI: 46409258
Description:

hypothetical protein LOC57212

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         20           2
 C cysteine            4.0          8           2
 D aspartate           3.5          7           1
 E glutamate           3.5          7           1
 F phenylalanine       3.5          7           1
 G glycine             9.5         19           3
 H histidine           4.5          9           1
 I isoleucine          2.5          5           1
 K lysine              0.5          1           1
 L leucine            10.4         21           2
 M methionine          0.5          1           1
 N asparagine          1.0          2           1
 P proline            10.9         22           3
 Q glutamine           6.0         12           1
 R arginine            4.0          8           1
 S serine             12.9         26           3
 T threonine           5.5         11           3
 V valine              7.0         14           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC57212 
POM121                0.036   nuclear pore membrane protein 121 
TAF4                  0.034   TBP-associated factor 4 
KDM6B                 0.031   lysine (K)-specific demethylase 6B 
EGR1                  0.031   early growth response 1 
LIX1L                 0.031   Lix1 homolog (mouse) like 
LOC100294420          0.028   PREDICTED: similar to mucin 2 
CREBBP                0.028   CREB binding protein isoform b 
CREBBP                0.028   CREB binding protein isoform a 
BPTF                  0.026   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.026   bromodomain PHD finger transcription factor isoform ...
PRDM2                 0.026   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.026   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.026   retinoblastoma protein-binding zinc finger protein i...
PROL1                 0.026   proline rich, lacrimal 1 
SRCAP                 0.026   Snf2-related CBP activator protein 
RERE                  0.026   atrophin-1 like protein isoform b 
RERE                  0.026   atrophin-1 like protein isoform a 
RERE                  0.026   atrophin-1 like protein isoform a 
NACA                  0.026   nascent polypeptide-associated complex alpha subuni...
DIAPH1                0.026   diaphanous 1 isoform 2 
DIAPH1                0.026   diaphanous 1 isoform 1 
LOC100288540          0.026   PREDICTED: hypothetical protein XP_002342775 
BAT3                  0.026   HLA-B associated transcript-3 isoform b 
BAT3                  0.026   HLA-B associated transcript-3 isoform b 
BAT3                  0.026   HLA-B associated transcript-3 isoform b 
BAT3                  0.026   HLA-B associated transcript-3 isoform a 
POM121C               0.026   POM121 membrane glycoprotein (rat)-like 
ZAN                   0.026   zonadhesin isoform 3 
ZAN                   0.026   zonadhesin isoform 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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