Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EGR1 Sequence: fasta or formatted (543aa) NCBI GI: 4503493
Description:

early growth response 1

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         43           3
 C cysteine            1.5          8           1
 D aspartate           3.3         18           1
 E glutamate           3.5         19           2
 F phenylalanine       4.6         25           1
 G glycine             6.3         34           9
 H histidine           2.0         11           1
 I isoleucine          2.9         16           1
 K lysine              3.5         19           2
 L leucine             5.7         31           2
 M methionine          2.0         11           2
 N asparagine          2.9         16           2
 P proline            12.9         70           3
 Q glutamine           4.8         26           3
 R arginine            4.1         22           2
 S serine             17.5         95           6
 T threonine           8.1         44           2
 V valine              3.1         17           2
 W tryptophan          0.2          1           1
 Y tyrosine            3.1         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   early growth response 1 
EGR3                  0.247   early growth response 3 
EGR2                  0.244   early growth response 2 protein isoform a 
EGR2                  0.244   early growth response 2 protein isoform a 
EGR2                  0.244   early growth response 2 protein isoform a 
EGR2                  0.240   early growth response 2 protein isoform b 
EGR4                  0.144   early growth response 4 
WT1                   0.097   Wilms tumor 1 isoform B 
WT1                   0.097   Wilms tumor 1 isoform A 
WT1                   0.091   Wilms tumor 1 isoform D 
WT1                   0.091   Wilms tumor 1 isoform C 
ZNF233                0.075   zinc finger protein 233 
ZNF257                0.075   zinc finger protein 257 
ZNF91                 0.074   zinc finger protein 91 
ZNF429                0.074   zinc finger protein 429 
ZNF430                0.074   zinc finger protein 430 
ZNF681                0.074   zinc finger protein 681 
SP5                   0.073   Sp5 transcription factor 
ZNF358                0.073   zinc finger protein 358 
ZNF436                0.072   zinc finger protein 436 
ZNF436                0.072   zinc finger protein 436 
ZNF675                0.072   zinc finger protein 675 
ZSCAN22               0.072   zinc finger and SCAN domain containing 22 
ZNF107                0.072   zinc finger protein 107 
ZNF107                0.072   zinc finger protein 107 
ZNF420                0.071   zinc finger protein 420 
ZNF286A               0.071   zinc finger protein 286 
ZNF286A               0.071   zinc finger protein 286 
ZNF678                0.071   zinc finger protein 678 
ZNF845                0.071   zinc finger protein 845 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press