Guide to the Human Genome
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Name: EDN3 Sequence: fasta or formatted (238aa) NCBI GI: 46370064
Description:

endothelin 3 isoform 1 preproprotein

Referenced in:

Peptide and Protein G-coupled Signals

Other entries for this name:
alt mRNA [238aa] endothelin 3 isoform 1 preproprotein
alt prot [219aa] endothelin 3 isoform 2 preproprotein
alt prot [224aa] endothelin 3 isoform 3 preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         21           2
 C cysteine            5.0         12           1
 D aspartate           3.8          9           1
 E glutamate           7.6         18           3
 F phenylalanine       2.5          6           1
 G glycine            10.9         26           1
 H histidine           3.4          8           2
 I isoleucine          1.3          3           2
 K lysine              4.2         10           1
 L leucine             8.0         19           2
 M methionine          0.8          2           1
 N asparagine          1.7          4           1
 P proline             8.4         20           1
 Q glutamine           5.0         12           2
 R arginine            5.9         14           2
 S serine              7.6         18           2
 T threonine           6.7         16           1
 V valine              5.0         12           1
 W tryptophan          0.8          2           1
 Y tyrosine            2.5          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   endothelin 3 isoform 1 preproprotein 
EDN3                  1.000   endothelin 3 isoform 1 preproprotein 
EDN3                  0.916   endothelin 3 isoform 3 preproprotein 
EDN3                  0.823   endothelin 3 isoform 2 preproprotein 
EDN1                  0.134   endothelin 1 
EDN2                  0.127   endothelin 2 preproprotein 
ANKRD56               0.033   ankyrin repeat domain 56 
ISX                   0.025   intestine-specific homeobox 
WDR33                 0.025   WD repeat domain 33 isoform 1 
OGFR                  0.023   opioid growth factor receptor 
LENG9                 0.023   leukocyte receptor cluster (LRC) member 9 
ASXL2                 0.021   additional sex combs like 2 
LOC100133889          0.021   PREDICTED: hypothetical protein 
UNCX                  0.021   UNC homeobox 
CACNA1H               0.019   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.019   calcium channel, voltage-dependent, T type, alpha 1H...
LRIG1                 0.017   leucine-rich repeats and immunoglobulin-like domains...
HOXD4                 0.017   homeobox D4 
LOC730036             0.017   PREDICTED: hypothetical protein 
KCNH4                 0.017   potassium voltage-gated channel, subfamily H, member ...
MUC12                 0.017   PREDICTED: mucin 12 
LOC100133714          0.017   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.017   PREDICTED: mucin 12 
MUC12                 0.017   PREDICTED: mucin 12, cell surface associated 
COL7A1                0.017   alpha 1 type VII collagen precursor 
PRDM8                 0.017   PR domain containing 8 
PRDM8                 0.017   PR domain containing 8 
LOC100288972          0.015   PREDICTED: hypothetical protein XP_002342949 
NHLH1                 0.015   nescient helix loop helix 1 
MARCH11               0.015   membrane-associated ring finger (C3HC4) 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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