Guide to the Human Genome
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Name: EDN3 Sequence: fasta or formatted (219aa) NCBI GI: 46370060
Description:

endothelin 3 isoform 2 preproprotein

Referenced in:

Peptide and Protein G-coupled Signals

Other entries for this name:
alt prot [238aa] endothelin 3 isoform 1 preproprotein
alt prot [224aa] endothelin 3 isoform 3 preproprotein
alt prot [238aa] endothelin 3 isoform 1 preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         19           2
 C cysteine            5.0         11           1
 D aspartate           3.2          7           1
 E glutamate           7.3         16           3
 F phenylalanine       2.3          5           1
 G glycine            11.4         25           1
 H histidine           2.7          6           2
 I isoleucine          1.4          3           2
 K lysine              4.1          9           1
 L leucine             7.3         16           2
 M methionine          0.5          1           1
 N asparagine          2.7          6           1
 P proline             6.8         15           1
 Q glutamine           4.1          9           1
 R arginine            8.7         19           2
 S serine              7.8         17           2
 T threonine           7.3         16           1
 V valine              5.0         11           1
 W tryptophan          0.9          2           1
 Y tyrosine            2.7          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   endothelin 3 isoform 2 preproprotein 
EDN3                  0.902   endothelin 3 isoform 1 preproprotein 
EDN3                  0.902   endothelin 3 isoform 1 preproprotein 
EDN3                  0.833   endothelin 3 isoform 3 preproprotein 
EDN2                  0.146   endothelin 2 preproprotein 
EDN1                  0.146   endothelin 1 
ANKRD56               0.037   ankyrin repeat domain 56 
ISX                   0.027   intestine-specific homeobox 
WDR33                 0.027   WD repeat domain 33 isoform 1 
OGFR                  0.025   opioid growth factor receptor 
LENG9                 0.025   leukocyte receptor cluster (LRC) member 9 
ASXL2                 0.023   additional sex combs like 2 
LOC100133889          0.023   PREDICTED: hypothetical protein 
UNCX                  0.023   UNC homeobox 
CACNA1H               0.021   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.021   calcium channel, voltage-dependent, T type, alpha 1H...
HOXD4                 0.018   homeobox D4 
LOC730036             0.018   PREDICTED: hypothetical protein 
KCNH4                 0.018   potassium voltage-gated channel, subfamily H, member ...
MUC12                 0.018   PREDICTED: mucin 12 
LOC100133714          0.018   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.018   PREDICTED: mucin 12 
MUC12                 0.018   PREDICTED: mucin 12, cell surface associated 
COL7A1                0.018   alpha 1 type VII collagen precursor 
PRDM8                 0.018   PR domain containing 8 
PRDM8                 0.018   PR domain containing 8 
LOC100288972          0.016   PREDICTED: hypothetical protein XP_002342949 
NHLH1                 0.016   nescient helix loop helix 1 
MARCH11               0.016   membrane-associated ring finger (C3HC4) 11 
TBX6                  0.016   T-box 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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