Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 46370062
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46370062 endothelin 3 isoform 3 preproprotein [Homo sapiens]
(224 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46370062 endothelin 3 isoform 3 preproprotein [Homo sapiens] 477 e-135
gi|46370064 endothelin 3 isoform 1 preproprotein [Homo sapiens] 464 e-131
gi|4557545 endothelin 3 isoform 1 preproprotein [Homo sapiens] 464 e-131
gi|46370060 endothelin 3 isoform 2 preproprotein [Homo sapiens] 389 e-108
gi|154800437 endothelin 1 [Homo sapiens] 87 1e-17
gi|4503463 endothelin 2 preproprotein [Homo sapiens] 86 2e-17
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 41 0.001
gi|57232759 intestine-specific homeobox [Homo sapiens] 37 0.018
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 37 0.018
gi|33286446 opioid growth factor receptor [Homo sapiens] 36 0.030
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap... 36 0.030
gi|153792780 additional sex combs like 2 [Homo sapiens] 35 0.040
gi|169169677 PREDICTED: hypothetical protein [Homo sapiens] 35 0.052
gi|122937321 UNC homeobox [Homo sapiens] 35 0.068
gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H... 34 0.089
gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H... 34 0.089
gi|23397672 homeobox D4 [Homo sapiens] 33 0.20
gi|239745235 PREDICTED: hypothetical protein [Homo sapiens] 33 0.20
gi|6912446 potassium voltage-gated channel, subfamily H, member ... 33 0.26
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 33 0.26
gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens] 33 0.26
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 33 0.26
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 33 0.26
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 33 0.26
gi|150378478 PR domain containing 8 [Homo sapiens] 33 0.26
gi|150378439 PR domain containing 8 [Homo sapiens] 33 0.26
gi|239743739 PREDICTED: hypothetical protein XP_002342949 [Homo ... 32 0.34
gi|5031943 nescient helix loop helix 1 [Homo sapiens] 32 0.34
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 32 0.34
gi|18201900 T-box 6 [Homo sapiens] 32 0.44
>gi|46370062 endothelin 3 isoform 3 preproprotein [Homo sapiens]
Length = 224
Score = 477 bits (1228), Expect = e-135
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 60
MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
Sbjct: 1 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 60
Query: 61 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT 120
PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
Sbjct: 61 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT 120
Query: 121 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS 180
PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
Sbjct: 121 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS 180
Query: 181 RQVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP 224
RQVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP
Sbjct: 181 RQVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP 224
>gi|46370064 endothelin 3 isoform 1 preproprotein [Homo sapiens]
Length = 238
Score = 464 bits (1193), Expect = e-131
Identities = 222/238 (93%), Positives = 223/238 (93%), Gaps = 14/238 (5%)
Query: 1 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 60
MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
Sbjct: 1 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 60
Query: 61 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT 120
PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
Sbjct: 61 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT 120
Query: 121 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS 180
PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
Sbjct: 121 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS 180
Query: 181 R--------------QVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP 224
+VEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP
Sbjct: 181 SNSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP 238
>gi|4557545 endothelin 3 isoform 1 preproprotein [Homo sapiens]
Length = 238
Score = 464 bits (1193), Expect = e-131
Identities = 222/238 (93%), Positives = 223/238 (93%), Gaps = 14/238 (5%)
Query: 1 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 60
MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
Sbjct: 1 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 60
Query: 61 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT 120
PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
Sbjct: 61 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT 120
Query: 121 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS 180
PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
Sbjct: 121 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS 180
Query: 181 R--------------QVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP 224
+VEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP
Sbjct: 181 SNSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP 238
>gi|46370060 endothelin 3 isoform 2 preproprotein [Homo sapiens]
Length = 219
Score = 389 bits (998), Expect = e-108
Identities = 181/192 (94%), Positives = 184/192 (95%)
Query: 1 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 60
MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
Sbjct: 1 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 60
Query: 61 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT 120
PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
Sbjct: 61 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT 120
Query: 121 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS 180
PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
Sbjct: 121 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS 180
Query: 181 RQVEVKDQQSKQ 192
++ K+
Sbjct: 181 SNSRTAEKTDKE 192
>gi|154800437 endothelin 1 [Homo sapiens]
Length = 212
Score = 87.0 bits (214), Expect = 1e-17
Identities = 49/122 (40%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 52 GPGEETVAGPGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYC 111
G E V G V + P+P P + + RS+RC+C + DKECVY+C
Sbjct: 17 GAPETAVLGAELSAVGENGGEKPTPSPPWRLR---------RSKRCSCSSLMDKECVYFC 67
Query: 112 HLDIIWINTPEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLH 171
HLDIIW+NTPE VPYGL GS R KR+ L RC C + DK C +
Sbjct: 68 HLDIIWVNTPEHVVPYGL----GSPRSKRALENLLPTKATDREN--RCQCASQKDKKCWN 121
Query: 172 FC 173
FC
Sbjct: 122 FC 123
>gi|4503463 endothelin 2 preproprotein [Homo sapiens]
Length = 178
Score = 86.3 bits (212), Expect = 2e-17
Identities = 49/112 (43%), Positives = 57/112 (50%), Gaps = 23/112 (20%)
Query: 62 GEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINTP 121
G+G A T Q P A+G H R RRC+C ++ DKECVY+CHLDIIW+NTP
Sbjct: 22 GKGQAAATLEQ------PASSSHAQGT--HLRLRRCSCSSWLDKECVYFCHLDIIWVNTP 73
Query: 122 EQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFC 173
EQT PYGL N +R LP RC C D AC FC
Sbjct: 74 EQTAPYGLGN-----PPRRRRRSLP----------RRCQCSSARDPACATFC 110
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 40.8 bits (94), Expect = 0.001
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 22/111 (19%)
Query: 15 SAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAG-------------PGEETVAGP 61
SA G PCS G Q P R E + EE AG PG ++ P
Sbjct: 98 SAGGAAPCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAARAADAACNGLPGSDSRRAP 157
Query: 62 GEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDK-ECVYYC 111
G+G G S GSPGQ A R +C K + C + C
Sbjct: 158 GKG--------GGSKGSPGQRPPVPAAAAAGAQARASCAAAKTQGRCCWEC 200
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 47 EETVAGPGEETVAGPGEGTVAPTALQGPSPGSPGQEQ 83
EE + P E A P G AP + +G G P Q+Q
Sbjct: 83 EEGLQRPREPPAAAPSAGGAAPCSPRGARRGEPPQQQ 119
>gi|57232759 intestine-specific homeobox [Homo sapiens]
Length = 245
Score = 36.6 bits (83), Expect = 0.018
Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 25/126 (19%)
Query: 39 AARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCT 98
A RS+ D E GPGEE GPGE + + L+ P ++Q EG R R T
Sbjct: 41 ARRSDMDRPE---GPGEE---GPGEAAASGSGLE-----KPPKDQPQEGRKSKRRVR--T 87
Query: 99 CFTYKD----KECVYYCHLDIIWI--------NTPEQTVPYGLSNYRGSFRGKRSAGPLP 146
FT + ++ ++ H + I N PE V N R +R + G L
Sbjct: 88 TFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNLG 147
Query: 147 GNLQLS 152
QLS
Sbjct: 148 APQQLS 153
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 36.6 bits (83), Expect = 0.018
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 18 GFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPT---ALQGP 74
G P G RG+ P G +E PG ++ GP +G++ P +QGP
Sbjct: 821 GHGPQEMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGP 880
Query: 75 SPGSPGQEQAAEG 87
PG GQ+ A G
Sbjct: 881 -PGPQGQQNPARG 892
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 35.8 bits (81), Expect = 0.030
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 28 AGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTV-APTALQGPSPGSPGQEQAAE 86
AG S P A SE EE G GP EGT +P+ GPSP P ++ AE
Sbjct: 482 AGSPAPSGHPKAGHSENGVEEDTEGR-----TGPKEGTPGSPSETPGPSPAGPAGDEPAE 536
Query: 87 GAPE 90
E
Sbjct: 537 SPSE 540
Score = 30.4 bits (67), Expect = 1.3
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 21 PCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEET---VAGPG--EGTVAPTALQGPS 75
P +GD S+ P + +E P E AGP E +P+ GPS
Sbjct: 526 PAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPS 585
Query: 76 PGSPGQEQAAEGAPE 90
P P +++ AE E
Sbjct: 586 PAGPTRDEPAESPSE 600
>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
sapiens]
Length = 501
Score = 35.8 bits (81), Expect = 0.030
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 25 SGDAGRRG--VSQAPTAARSEG--DCEETVAGPGEETVAGPGEGTVAP--TALQGPSPGS 78
SG A RG + AP + G E T+AG G+E A P G+ P T Q P
Sbjct: 170 SGSAAGRGPTILDAPNTEGAHGAEGAEWTLAGTGQEAQAAPKRGSTRPLCTGHQEPGVEE 229
Query: 79 PGQEQAAE 86
PG+ +AA+
Sbjct: 230 PGELEAAQ 237
>gi|153792780 additional sex combs like 2 [Homo sapiens]
Length = 1435
Score = 35.4 bits (80), Expect = 0.040
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 30 RRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPGSPGQEQAAEG 87
+R + A AA + T+ GPG GPGEG TA +G SPGS + +G
Sbjct: 670 QRAAAAAAAAAAAAASVGGTIPGPGPGGGQGPGEGGEGQTA-RGGSPGSDRVSETGKG 726
>gi|169169677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 35.0 bits (79), Expect = 0.052
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 29 GRRGVSQAPTAAR---SEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPGSPGQEQAA 85
G R + +A T R + G +E AGP EE G G V P +PG QAA
Sbjct: 60 GERWLGRAHTLGRVGGAAGPTQEAPAGP-EEVTPGTARGRVRAEGYGRHQPKAPGGRQAA 118
Query: 86 EGAPEHHRSRRCTC 99
P + R C
Sbjct: 119 PAMPSNRDQRLAGC 132
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 34.7 bits (78), Expect = 0.068
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 31 RGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPGSPGQEQAAEGAPE 90
R ++ A GDC + AG AGP AP+ GP P SP +E A G PE
Sbjct: 461 RDLASAAATEGGGGDCAD--AG-----TAGPAPPPPAPSPRPGPRPPSPAEEPATCGVPE 513
>gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform b [Homo sapiens]
Length = 2347
Score = 34.3 bits (77), Expect = 0.089
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 23 SQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPGSPG 80
S+SGD+ RGV + R GD + P GPG G+ A Q +PG PG
Sbjct: 717 SESGDSDGRGVYEFTQDVR-HGDRWDPTRPPRATDTPGPGPGSPQRRAQQRAAPGEPG 773
>gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform a [Homo sapiens]
Length = 2353
Score = 34.3 bits (77), Expect = 0.089
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 23 SQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPGSPG 80
S+SGD+ RGV + R GD + P GPG G+ A Q +PG PG
Sbjct: 717 SESGDSDGRGVYEFTQDVR-HGDRWDPTRPPRATDTPGPGPGSPQRRAQQRAAPGEPG 773
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 33.1 bits (74), Expect = 0.20
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 59 AGPGEGTVAPTALQGPSPGSPGQEQAAEGAP 89
+GPG G+ P G PG PG AA G P
Sbjct: 65 SGPGPGSALPARGHGQEPGGPGGHYAAPGEP 95
>gi|239745235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 664
Score = 33.1 bits (74), Expect = 0.20
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 20/104 (19%)
Query: 20 VPCSQSGDAGRRGVSQAPTA---------------ARSEGDCEETVAGPGEETVAGPGEG 64
VP +G GR AP+A + G +VAGP EE + PG
Sbjct: 108 VPSGTAGVPGRAPPGPAPSALAWPTAHRTPESQPVSSVAGLVSGSVAGPAEEMLV-PGSP 166
Query: 65 TVA----PTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKD 104
+A P+A GPSP SP A+ R F+++D
Sbjct: 167 EIAAPLPPSASLGPSPSSPRVPGGADPIQSSALPYRSQTFSFQD 210
>gi|6912446 potassium voltage-gated channel, subfamily H, member 4
[Homo sapiens]
Length = 1017
Score = 32.7 bits (73), Expect = 0.26
Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 7/131 (5%)
Query: 28 AGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPGSPGQEQAAEG 87
A +G P S+G CE T G E + T + L GP P ++ +
Sbjct: 32 ANAQGTRGFPIVYCSDGFCELTGYGRTEVM-----QKTCSCRFLYGPETSEPALQRLHKA 86
Query: 88 APEHHRSRRCTCFTYKDKECVYYCHLDIIWINTPEQTVPYGLSNYRG-SFRGKRSAGPLP 146
H R CF KD ++C LD++ I V L +++ + G GP
Sbjct: 87 LEGHQEHRAEICFYRKDGS-AFWCLLDMMPIKNEMGEVVLFLFSFKDITQSGSPGLGPQG 145
Query: 147 GNLQLSHRPHL 157
G +H L
Sbjct: 146 GRGDSNHENSL 156
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 32.7 bits (73), Expect = 0.26
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 32 GVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPG--SPGQEQAAEGAP 89
GVS+ T + S T A PG T+ G + + A + GP+ SPG A+ P
Sbjct: 580 GVSEESTTSHSRPGSTHTTAFPGSTTMPGLSQESTASHSSPGPTDTTLSPGSTTASSLGP 639
Query: 90 EH 91
E+
Sbjct: 640 EY 641
>gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]
Length = 861
Score = 32.7 bits (73), Expect = 0.26
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 32 GVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPG--SPGQEQAAEGAP 89
GVS+ T + S T A PG T+ G + + A + GP+ SPG A+ P
Sbjct: 515 GVSEESTTSHSRPGSTHTTAFPGSTTMPGLSQESTASHSSPGPTDTTLSPGSTTASSLGP 574
Query: 90 EH 91
E+
Sbjct: 575 EY 576
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 32.7 bits (73), Expect = 0.26
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 32 GVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPG--SPGQEQAAEGAP 89
GVS+ T + S T A PG T+ G + + A + GP+ SPG A+ P
Sbjct: 659 GVSEESTTSHSRPGSTHTTAFPGSTTMPGLSQESTASHSSPGPTDTTLSPGSTTASSLGP 718
Query: 90 EH 91
E+
Sbjct: 719 EY 720
Score = 29.3 bits (64), Expect = 2.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 32 GVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPG--SPGQEQAAEGAP 89
GVS+ T + S T A PG T+ G + + A + G + SPG A+ P
Sbjct: 1714 GVSEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASHSSPGSTDTTLSPGSTTASSLGP 1773
Query: 90 E 90
E
Sbjct: 1774 E 1774
Score = 29.3 bits (64), Expect = 2.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 32 GVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPG--SPGQEQAAEGAP 89
GVS+ T + S T A PG T+ G + + A + G + SPG A+ P
Sbjct: 3271 GVSEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASHSSPGSTDTTLSPGSTTASSLGP 3330
Query: 90 E 90
E
Sbjct: 3331 E 3331
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 32.7 bits (73), Expect = 0.26
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 32 GVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPG--SPGQEQAAEGAP 89
GVS+ T + S T A PG T+ G + + A + GP+ SPG A+ P
Sbjct: 146 GVSEESTTSHSRPGSTHTTAFPGSTTMPGLSQESTASHSSPGPTDTTLSPGSTTASSLGP 205
Query: 90 EH 91
E+
Sbjct: 206 EY 207
Score = 29.3 bits (64), Expect = 2.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 32 GVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPG--SPGQEQAAEGAP 89
GVS+ T + S T A PG T+ G + + A + G + SPG A+ P
Sbjct: 1201 GVSEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASHSSPGSTDTTLSPGSTTASSLGP 1260
Query: 90 E 90
E
Sbjct: 1261 E 1261
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 32.7 bits (73), Expect = 0.26
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 21 PCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPS-PGSP 79
P GD G RG P A +GD + GE GPGEG +AP P PGSP
Sbjct: 1378 PRGPLGDPGPRGPPGLPGTAM-KGDKGDR----GERGPPGPGEGGIAPGEPGLPGLPGSP 1432
Query: 80 GQE 82
G +
Sbjct: 1433 GPQ 1435
>gi|150378478 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 32.7 bits (73), Expect = 0.26
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 9 FGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEE-TVAGPG---EETVAGPGEG 64
FGL P ++G+A R + AAR+ EE T G G E+ AG G G
Sbjct: 362 FGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGG 421
Query: 65 TVAPTA--------LQGPSPGSPGQEQAAEGAP 89
+ P A L P PG P + G+P
Sbjct: 422 SSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSP 454
Score = 28.1 bits (61), Expect = 6.3
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 15 SAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGP 74
+A G S+ DAG G S P AA + G E + P G P+ L+G
Sbjct: 403 TADGAGVASEDQDAGGGGGSSTPAAA----------SPVGAEKLLAPRPGGPLPSRLEG- 451
Query: 75 SPGSPGQEQAAEGAPE 90
GSP + A P+
Sbjct: 452 --GSPARGSAFTSVPQ 465
>gi|150378439 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 32.7 bits (73), Expect = 0.26
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 9 FGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEE-TVAGPG---EETVAGPGEG 64
FGL P ++G+A R + AAR+ EE T G G E+ AG G G
Sbjct: 362 FGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGG 421
Query: 65 TVAPTA--------LQGPSPGSPGQEQAAEGAP 89
+ P A L P PG P + G+P
Sbjct: 422 SSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSP 454
Score = 28.1 bits (61), Expect = 6.3
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 15 SAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGP 74
+A G S+ DAG G S P AA + G E + P G P+ L+G
Sbjct: 403 TADGAGVASEDQDAGGGGGSSTPAAA----------SPVGAEKLLAPRPGGPLPSRLEG- 451
Query: 75 SPGSPGQEQAAEGAPE 90
GSP + A P+
Sbjct: 452 --GSPARGSAFTSVPQ 465
>gi|239743739 PREDICTED: hypothetical protein XP_002342949 [Homo
sapiens]
Length = 94
Score = 32.3 bits (72), Expect = 0.34
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 8 LFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAGPGEGTVA 67
+ +TVT AA ++G+A S AP + + + G+ AG G +
Sbjct: 1 MVAVTVTKAAARASRMRTGEAD----SPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLE 56
Query: 68 PTALQGPSPGSPGQEQAAEGA 88
A PG+ G ++ GA
Sbjct: 57 VAAAAAAQPGAAGGKRTTRGA 77
>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
Length = 133
Score = 32.3 bits (72), Expect = 0.34
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 37 PTAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRR 96
PT + +E + G G + G G G +GP PG PG++ + E R RR
Sbjct: 14 PTHSETESGFSDCGGGAGPD---GAGPGGPGGGQARGPEPGEPGRKDLQHLSREERRRRR 70
Query: 97 CTCFTYK 103
Y+
Sbjct: 71 RATAKYR 77
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 32.3 bits (72), Expect = 0.34
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 25 SGDAGRRGVSQAPTAARSEGDCEETVAGPG-EETVAGPGEGTVAPTALQGPSPGSPGQEQ 83
+GD+G G + P AA ++G E+ AG G E G G+ + S S G +Q
Sbjct: 99 AGDSGE-GPRRLPEAAAAKGGPGESEAGAGGERERRGAGDQPETRSVCSSRSSSSGGGDQ 157
Query: 84 AAEGAPEHHRSRRCTCF 100
A +HH+ CF
Sbjct: 158 RAGHQHQHHQPICKICF 174
>gi|18201900 T-box 6 [Homo sapiens]
Length = 436
Score = 32.0 bits (71), Expect = 0.44
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 31 RGVSQAPTAARSEGD-----CEETVAGPGEET----VAGPGEGTVAPTAL-QGPSPGSPG 80
RG A T A GD C+ T+ G E+ PGE T AP L GPS +
Sbjct: 291 RGPEPAATEAYGSGDTPGGPCDSTLGGDIRESDPEQAPAPGEATAAPAPLCGGPSAEAYL 350
Query: 81 QEQAA-EGAPEHHRSR 95
AA GAP H +R
Sbjct: 351 LHPAAFHGAPSHLPTR 366
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,242,359
Number of Sequences: 37866
Number of extensions: 591228
Number of successful extensions: 3318
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 170
Number of HSP's that attempted gapping in prelim test: 3020
Number of HSP's gapped (non-prelim): 441
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.