Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MAPKAP1 Sequence: fasta or formatted (486aa) NCBI GI: 13129138
Description:

mitogen-activated protein kinase associated protein 1 isoform 2

Referenced in:

MAP Kinase Pathways

Other entries for this name:
alt prot [330aa] mitogen-activated protein kinase associated protein 1 isoform 4
alt prot [323aa] mitogen-activated protein kinase associated protein 1 isoform 5
alt prot [330aa] mitogen-activated protein kinase associated protein 1 isoform 4
alt prot [475aa] mitogen-activated protein kinase associated protein 1 isoform 3
alt prot [522aa] mitogen-activated protein kinase associated protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         26           2
 C cysteine            1.4          7           1
 D aspartate           6.8         33           2
 E glutamate           6.0         29           2
 F phenylalanine       3.9         19           1
 G glycine             4.7         23           1
 H histidine           3.1         15           2
 I isoleucine          6.4         31           2
 K lysine              8.6         42           2
 L leucine             8.4         41           2
 M methionine          1.9          9           1
 N asparagine          3.9         19           2
 P proline             3.7         18           2
 Q glutamine           5.8         28           2
 R arginine            4.9         24           3
 S serine             10.5         51           2
 T threonine           5.3         26           2
 V valine              5.8         28           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.7         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitogen-activated protein kinase associated protein ... 
MAPKAP1               0.981   mitogen-activated protein kinase associated protein ...
MAPKAP1               0.892   mitogen-activated protein kinase associated protein ...
MAPKAP1               0.655   mitogen-activated protein kinase associated protein ...
MAPKAP1               0.572   mitogen-activated protein kinase associated protein ...
MAPKAP1               0.572   mitogen-activated protein kinase associated protein ...
CCDC148               0.008   coiled-coil domain containing 148 
SFRS17A               0.008   DNA segment on chromosome X and Y (unique) 155 expre...
TRIP10                0.008   thyroid hormone receptor interactor 10 
CLTA                  0.006   clathrin, light polypeptide A isoform c 
CLTA                  0.006   clathrin, light polypeptide A isoform a 
CLTA                  0.006   clathrin, light polypeptide A isoform b 
TCHH                  0.006   trichohyalin 
ZNF853                0.005   zinc finger protein 853 
PAK3                  0.005   p21-activated kinase 3 isoform d 
PAK3                  0.005   p21-activated kinase 3 isoform c 
PAK3                  0.005   p21-activated kinase 3 isoform b 
PAK3                  0.005   p21-activated kinase 3 isoform a 
PAK3                  0.005   p21-activated kinase 3 isoform a 
PAK3                  0.005   p21-activated kinase 3 isoform a 
ASCC1                 0.005   activating signal cointegrator 1 complex subunit 1 [...
TTN                   0.005   titin isoform N2-A 
SART3                 0.005   squamous cell carcinoma antigen recognized by T cells...
CALD1                 0.005   caldesmon 1 isoform 5 
CALD1                 0.005   caldesmon 1 isoform 4 
CALD1                 0.005   caldesmon 1 isoform 3 
CALD1                 0.005   caldesmon 1 isoform 2 
CALD1                 0.005   caldesmon 1 isoform 1 
MAP7                  0.005   microtubule-associated protein 7 
SSX2IP                0.005   synovial sarcoma, X breakpoint 2 interacting protein...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press