Search of human proteins with 13129136

Search of human proteins with 13129136

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13129136 TATA box binding protein (TBP)-associated factor,
RNA polymerase I, D, 41kDa [Homo sapiens]
         (278 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13129136 TATA box binding protein (TBP)-associated factor, RN...   558   e-159
gi|31657119 carboxypeptidase 2, cytosolic [Homo sapiens]               35   0.094
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]          34   0.16 
gi|169161980 PREDICTED: similar to FUS interacting protein (seri...    34   0.16 
gi|145580615 KRI1 homolog [Homo sapiens]                               33   0.27 
gi|74272284 membrane associated guanylate kinase, WW and PDZ dom...    33   0.27 
gi|6633798 BarH-like homeobox 2 [Homo sapiens]                         32   0.47 
gi|225735631 mesoderm induction early response 1 isoform g [Homo...    32   0.61 
gi|225735619 mesoderm induction early response 1 isoform i [Homo...    32   0.61 
gi|225735617 mesoderm induction early response 1 isoform h [Homo...    32   0.61 
gi|225735615 mesoderm induction early response 1 isoform a [Homo...    32   0.61 
gi|118130872 mesoderm induction early response 1 isoform f [Homo...    32   0.61 
gi|225735612 mesoderm induction early response 1 isoform e [Homo...    32   0.61 
gi|225735610 mesoderm induction early response 1 isoform d [Homo...    32   0.61 
gi|118130815 mesoderm induction early response 1 isoform c [Homo...    32   0.61 
gi|225735607 mesoderm induction early response 1 isoform b [Homo...    32   0.61 
gi|225735605 mesoderm induction early response 1 isoform a [Homo...    32   0.61 
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]             32   0.61 
gi|30795229 hemopoietic cell kinase isoform p61HCK [Homo sapiens]      32   0.80 
gi|27734775 hypothetical protein LOC286499 [Homo sapiens]              32   0.80 
gi|254028267 myosin 1H [Homo sapiens]                                  31   1.4  
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ...    31   1.4  
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ...    31   1.4  
gi|122939208 nuclear antigen Sp100 isoform 1 [Homo sapiens]            31   1.4  
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]             31   1.4  
gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens]     31   1.4  
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]      31   1.4  
gi|56090620 NFKB activating protein-like [Homo sapiens]                31   1.4  
gi|40786420 immunoglobulin-like domain containing receptor 2 [Ho...    30   1.8  
gi|83715964 high-mobility group 20B [Homo sapiens]                     30   1.8  

>gi|13129136 TATA box binding protein (TBP)-associated factor, RNA
           polymerase I, D, 41kDa [Homo sapiens]
          Length = 278

 Score =  558 bits (1438), Expect = e-159
 Identities = 278/278 (100%), Positives = 278/278 (100%)

Query: 1   MDKSGIDSLDHVTSDAVELANRSDNSSDSSLFKTQCIPYSPKGEKRNPIRKFVRTPESVH 60
           MDKSGIDSLDHVTSDAVELANRSDNSSDSSLFKTQCIPYSPKGEKRNPIRKFVRTPESVH
Sbjct: 1   MDKSGIDSLDHVTSDAVELANRSDNSSDSSLFKTQCIPYSPKGEKRNPIRKFVRTPESVH 60

Query: 61  ASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLI 120
           ASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLI
Sbjct: 61  ASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLI 120

Query: 121 DKKKQFRSRGSGFPFLESENEKNAPWRKILTFEQAVARGFFNYIEKLKYEHHLKESLKQM 180
           DKKKQFRSRGSGFPFLESENEKNAPWRKILTFEQAVARGFFNYIEKLKYEHHLKESLKQM
Sbjct: 121 DKKKQFRSRGSGFPFLESENEKNAPWRKILTFEQAVARGFFNYIEKLKYEHHLKESLKQM 180

Query: 181 NVGEDLENEDFDSRRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSE 240
           NVGEDLENEDFDSRRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSE
Sbjct: 181 NVGEDLENEDFDSRRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSE 240

Query: 241 FPVRLSVYLEEEDITEEAALSKKRATKAKNTGQRGLKM 278
           FPVRLSVYLEEEDITEEAALSKKRATKAKNTGQRGLKM
Sbjct: 241 FPVRLSVYLEEEDITEEAALSKKRATKAKNTGQRGLKM 278


>gi|31657119 carboxypeptidase 2, cytosolic [Homo sapiens]
          Length = 902

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 59  VHASDSSSDSSF-EPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIY 117
           + +S S SDSS  + +P+ +  I +    +KK +KKKKK+  Q T + R     ++N + 
Sbjct: 713 IESSTSGSDSSLSDGLPVHLANIADELTQKKKMFKKKKKKSLQ-TRKQRNEQYQKKNLMQ 771

Query: 118 SLIDKKKQFRSRGSGFP---------FLESENEKNAPWR 147
            L  K  +  S  +GF          F  SEN    P +
Sbjct: 772 KL--KLTEDTSEKAGFASTLQKQPTFFKNSENSSFLPMK 808


>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
          Length = 4967

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 66   SDSSFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLIDKKKQ 125
            SD    P+P+    + E+F+ +K + ++K+++    +   +   E       +  DK KQ
Sbjct: 4403 SDLMSNPVPMP--EVQEKFQEQKAKEEEKEEKEETKSEPEKAEGEDGEKEEKAKEDKGKQ 4460

Query: 126  FRSRGSGFPFLESENEKNAPWRKILTFEQAV----ARGFFN 162
               +     + E E  ++A W+KI+ ++Q +    AR F+N
Sbjct: 4461 KLRQLHTHRYGEPEVPESAFWKKIIAYQQKLLNYFARNFYN 4501


>gi|169161980 PREDICTED: similar to FUS interacting protein
           (serine-arginine rich) 1, partial [Homo sapiens]
          Length = 181

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 42  KGEKRNPIRKFVRTPESVHASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQP 101
           +G+++ P +   +   +V++S    D  ++    +    +ER ++R + +    +R Y P
Sbjct: 87  QGDRKTPNQMKAKEGRNVYSSSRYDD--YDRYRRSRSRSYERRRSRSRSFDYNYRRSYSP 144

Query: 102 TGRPRGRPEGRRN 114
             RP GRP   R+
Sbjct: 145 RNRPTGRPRRSRS 157


>gi|145580615 KRI1 homolog [Homo sapiens]
          Length = 709

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 63/291 (21%), Positives = 117/291 (40%), Gaps = 43/291 (14%)

Query: 24  DNSSDSSL---FKTQCIPYSPKGE----------KRNPIRKFVRTPESVHASDSSSDSSF 70
           D+SSDSS       + + + P+ E          K+   R + +     + + SSSDS  
Sbjct: 46  DSSSDSSSESDSSDERVEFDPQQERDFYKTLSLLKKKDPRIYQKDATFYNRTASSSDSEE 105

Query: 71  EPIPLT----IKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRR---NPIYSLIDKK 123
           +P  L     ++ ++   K+ +++   +K  +Y       G     R       S ++++
Sbjct: 106 DPEALEKQKKVRPMY--LKDYERKVILEKAGKYVDEENSDGETSNHRLQETSSQSYVEEQ 163

Query: 124 KQFRSRGSGFPFLESENEKNAP------WRKILTFEQAVARGFFNYIEKLKYEHHLK--E 175
           KQ +     F   +SE+E  A        +K     Q  A+   +YIE LK +  ++  +
Sbjct: 164 KQLKESFRAF-VEDSEDEDGAGEGGSSLLQKRAKTRQEKAQEEADYIEWLKGQKEIRNPD 222

Query: 176 SLKQMNVGEDLENEDFDSRRYKFLDDDGSISPIEESTAEDEDATHLEDNE----CDIKLA 231
           SLK++   ++  N+       +FL D       EE   E+ED   +E+ E      ++LA
Sbjct: 223 SLKELTHLKEYWNDPELDEGERFLRDYILNKRYEEEEEEEEDEEEMEEEEGVHGPPVQLA 282

Query: 232 -------GDSFIVSSE-FPVRLSVYLEEEDITEEAALSKKRATKAKNTGQR 274
                  G+ F+   E F  + +   EE D        +  A+  +   +R
Sbjct: 283 VDDSSDEGELFLKKQEDFEQKYNFRFEEPDSASVKTYPRSIASSVRRKDER 333


>gi|74272284 membrane associated guanylate kinase, WW and PDZ domain
            containing 1 isoform c [Homo sapiens]
          Length = 1462

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 54   RTPESVHASDSSSDSSFEPIPLTIKAIFERFKNRKKR-YKKKKKRRYQPTGRPRGRPEGR 112
            R+PE       S+D++ E           R K+ K+R    +++R   PT R  G P  R
Sbjct: 1321 RSPEKRREGTRSADNTLE----------RREKHEKRRDVSPERRRERSPTRRRDGSPSRR 1370

Query: 113  RNPIYSLIDKKKQFRSRGSGFP 134
            R  +  L+++++    R  G P
Sbjct: 1371 RRSLERLLEQRRSPERRRGGSP 1392


>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
          Length = 279

 Score = 32.3 bits (72), Expect = 0.47
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 11/96 (11%)

Query: 44  EKRNPIRKFVRTPESVHASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKK--KKRRYQP 101
           EK+   +K++ TP+ +  + S        + LT   +   ++NR+ ++KK   K  +  P
Sbjct: 149 EKKFQKQKYLSTPDRLDLAQS--------LGLTQLQVKTWYQNRRMKWKKMVLKGGQEAP 200

Query: 102 TGRPRGRPEGRRNPIYSLIDKKKQFRSRGSGFPFLE 137
           T +P+GRP+    P    I+ +++  S+  G   LE
Sbjct: 201 T-KPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLE 235


>gi|225735631 mesoderm induction early response 1 isoform g [Homo
           sapiens]
          Length = 470

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 194 RRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSEFPVRLSVYLEEED 253
           RR K+ D +   S +EE + EDED    ED + +I + G  F   +E PV +  Y E E 
Sbjct: 168 RRCKYFDTN---SEVEEESEEDEDYIPSEDWKKEI-MVGSMF--QAEIPVGICRYKENEK 221

Query: 254 ITE 256
           + E
Sbjct: 222 VYE 224


>gi|225735619 mesoderm induction early response 1 isoform i [Homo
           sapiens]
          Length = 370

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 194 RRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSEFPVRLSVYLEEED 253
           RR K+ D +   S +EE + EDED    ED + +I + G  F   +E PV +  Y E E 
Sbjct: 88  RRCKYFDTN---SEVEEESEEDEDYIPSEDWKKEI-MVGSMF--QAEIPVGICRYKENEK 141

Query: 254 ITE 256
           + E
Sbjct: 142 VYE 144


>gi|225735617 mesoderm induction early response 1 isoform h [Homo
           sapiens]
          Length = 485

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 194 RRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSEFPVRLSVYLEEED 253
           RR K+ D +   S +EE + EDED    ED + +I + G  F   +E PV +  Y E E 
Sbjct: 124 RRCKYFDTN---SEVEEESEEDEDYIPSEDWKKEI-MVGSMF--QAEIPVGICRYKENEK 177

Query: 254 ITE 256
           + E
Sbjct: 178 VYE 180


>gi|225735615 mesoderm induction early response 1 isoform a [Homo
           sapiens]
          Length = 529

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 194 RRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSEFPVRLSVYLEEED 253
           RR K+ D +   S +EE + EDED    ED + +I + G  F   +E PV +  Y E E 
Sbjct: 168 RRCKYFDTN---SEVEEESEEDEDYIPSEDWKKEI-MVGSMF--QAEIPVGICRYKENEK 221

Query: 254 ITE 256
           + E
Sbjct: 222 VYE 224


>gi|118130872 mesoderm induction early response 1 isoform f [Homo
           sapiens]
          Length = 433

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 194 RRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSEFPVRLSVYLEEED 253
           RR K+ D +   S +EE + EDED    ED + +I + G  F   +E PV +  Y E E 
Sbjct: 151 RRCKYFDTN---SEVEEESEEDEDYIPSEDWKKEI-MVGSMF--QAEIPVGICRYKENEK 204

Query: 254 ITE 256
           + E
Sbjct: 205 VYE 207


>gi|225735612 mesoderm induction early response 1 isoform e [Homo
           sapiens]
          Length = 486

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 194 RRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSEFPVRLSVYLEEED 253
           RR K+ D +   S +EE + EDED    ED + +I + G  F   +E PV +  Y E E 
Sbjct: 204 RRCKYFDTN---SEVEEESEEDEDYIPSEDWKKEI-MVGSMF--QAEIPVGICRYKENEK 257

Query: 254 ITE 256
           + E
Sbjct: 258 VYE 260


>gi|225735610 mesoderm induction early response 1 isoform d [Homo
           sapiens]
          Length = 450

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 194 RRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSEFPVRLSVYLEEED 253
           RR K+ D +   S +EE + EDED    ED + +I + G  F   +E PV +  Y E E 
Sbjct: 168 RRCKYFDTN---SEVEEESEEDEDYIPSEDWKKEI-MVGSMF--QAEIPVGICRYKENEK 221

Query: 254 ITE 256
           + E
Sbjct: 222 VYE 224


>gi|118130815 mesoderm induction early response 1 isoform c [Homo
           sapiens]
          Length = 512

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 194 RRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSEFPVRLSVYLEEED 253
           RR K+ D +   S +EE + EDED    ED + +I + G  F   +E PV +  Y E E 
Sbjct: 151 RRCKYFDTN---SEVEEESEEDEDYIPSEDWKKEI-MVGSMF--QAEIPVGICRYKENEK 204

Query: 254 ITE 256
           + E
Sbjct: 205 VYE 207


>gi|225735607 mesoderm induction early response 1 isoform b [Homo
           sapiens]
          Length = 565

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 194 RRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSEFPVRLSVYLEEED 253
           RR K+ D +   S +EE + EDED    ED + +I + G  F   +E PV +  Y E E 
Sbjct: 204 RRCKYFDTN---SEVEEESEEDEDYIPSEDWKKEI-MVGSMF--QAEIPVGICRYKENEK 257

Query: 254 ITE 256
           + E
Sbjct: 258 VYE 260


>gi|225735605 mesoderm induction early response 1 isoform a [Homo
           sapiens]
          Length = 529

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 194 RRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSEFPVRLSVYLEEED 253
           RR K+ D +   S +EE + EDED    ED + +I + G  F   +E PV +  Y E E 
Sbjct: 168 RRCKYFDTN---SEVEEESEEDEDYIPSEDWKKEI-MVGSMF--QAEIPVGICRYKENEK 221

Query: 254 ITE 256
           + E
Sbjct: 222 VYE 224


>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
          Length = 352

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 21  NRSDNSSDSSLFKTQCIPYS--PKGEKRNPIRKFVRTPESVHASDSSSDSSFEPIPLTIK 78
           +R D S + S   +Q    S  P  E+R+  +   RT  S  +S SSS SS      +  
Sbjct: 151 SRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSS 210

Query: 79  AIFERFKNR-----KKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLIDKKKQFRSRGSGF 133
           +  +  K R     K+R KKKK+++ +  G+ +   +         +D+  +        
Sbjct: 211 SSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDG 270

Query: 134 PFLESENEKNAPWRKILTFEQAVAR 158
           P L  E +      K +T E+  AR
Sbjct: 271 PVLTDEQKSRIQAMKPMTKEEWDAR 295


>gi|30795229 hemopoietic cell kinase isoform p61HCK [Homo sapiens]
          Length = 526

 Score = 31.6 bits (70), Expect = 0.80
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 113 RNPIYSLIDKKKQFRSRGSGFPFLESENEKNAPWRKILTFEQAVARGFFNYIEKLKYEH 171
           + PIY + +    F ++GS   FL+S+     P  K++ F   +A G   +IE+  Y H
Sbjct: 326 KEPIYIITE----FMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEG-MAFIEQRNYIH 379


>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
          Length = 248

 Score = 31.6 bits (70), Expect = 0.80
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 45  KRNPIRKFVRTPESVHASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGR 104
           K+   +K  R+  S  +SDSSS SS            +  K + KR KKKK R Y+ +  
Sbjct: 94  KKKRKKKSCRSSSSSSSSDSSSSSSDSE---------DEEKKQGKRRKKKKNRSYKSSQS 144

Query: 105 PRGRPEGRRNPIYSLIDKKKQFRSRGSGFPFLESENEKNAPWRKILTFEQA 155
                E           K K    +      L  + +K+ P  K L+ E +
Sbjct: 145 STHESESESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDDKPLSSESS 195



 Score = 31.2 bits (69), Expect = 1.0
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 3   KSGIDSLDHVTSDAVELANRSDNSSDSSLFKTQCIPYSPKGEKRNPIRKFVRTPESVHAS 62
           KS   S     S++ E   +   S D +  +      S K +K  P  K +       +S
Sbjct: 140 KSSQSSTHESESESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDDKPL-------SS 192

Query: 63  DSSSDSSFEP-IPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEG 111
           +SSS+S +E  +    K   E  +  K++ KKKKK++++   + + +  G
Sbjct: 193 ESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKHSKKKKKKSG 242



 Score = 29.3 bits (64), Expect = 4.0
 Identities = 25/108 (23%), Positives = 42/108 (38%)

Query: 20  ANRSDNSSDSSLFKTQCIPYSPKGEKRNPIRKFVRTPESVHASDSSSDSSFEPIPLTIKA 79
           ++ S +SSDSS   +       K  KR   +K      S  ++  S   S E +    K+
Sbjct: 104 SSSSSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKS 163

Query: 80  IFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLIDKKKQFR 127
             E  K +  R   KK+++  P  +P        +     +  KK+ R
Sbjct: 164 KDETEKEKDVRSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRR 211


>gi|254028267 myosin 1H [Homo sapiens]
          Length = 1022

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/59 (25%), Positives = 32/59 (54%)

Query: 37  IPYSPKGEKRNPIRKFVRTPESVHASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKK 95
           I Y P+  K    + F+R P ++ A++ + + S   +   I+A ++R   R++  KK++
Sbjct: 661 IGYKPEEYKLGKTKIFIRFPRTLFATEDAFEFSKHQLVARIQATYKRCLGRREYVKKRQ 719


>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 3 [Homo sapiens]
          Length = 527

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 14/107 (13%)

Query: 116 IYSLIDKKKQFRSRGSGFPFLESENEKNAPWRKILTFEQAVARGFFNYIEKLKYEHHLKE 175
           +Y   D KK+ R    GF FLE E+ K A   K+L             +EK   +    E
Sbjct: 275 LYHQPDDKKKNR----GFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLE 330

Query: 176 SLKQMNVGEDLENEDFDSRRYKFLDDDGSISPIEESTAEDEDATHLE 222
            +K++   +D     FD R       DG++  +EE   +D +  ++E
Sbjct: 331 RVKKL---KDYAFIHFDER-------DGAVKAMEEMNGKDLEGENIE 367


>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 4 [Homo sapiens]
          Length = 588

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 14/107 (13%)

Query: 116 IYSLIDKKKQFRSRGSGFPFLESENEKNAPWRKILTFEQAVARGFFNYIEKLKYEHHLKE 175
           +Y   D KK+ R    GF FLE E+ K A   K+L             +EK   +    E
Sbjct: 275 LYHQPDDKKKNR----GFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLE 330

Query: 176 SLKQMNVGEDLENEDFDSRRYKFLDDDGSISPIEESTAEDEDATHLE 222
            +K++   +D     FD R       DG++  +EE   +D +  ++E
Sbjct: 331 RVKKL---KDYAFIHFDER-------DGAVKAMEEMNGKDLEGENIE 367


>gi|122939208 nuclear antigen Sp100 isoform 1 [Homo sapiens]
          Length = 885

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 7/124 (5%)

Query: 13  TSDAVELANRSD--NSSDSSLFK-TQCIPYSPKGEKRNPIRKFVR-TPESVHASDSSSDS 68
           +SD  +L+N  +   +  SSL + +   P  P+ +K + +  F +  P S  A   SS +
Sbjct: 452 SSDFSDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQA 511

Query: 69  SFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLIDK--KKQF 126
           S     + ++      K+  KR +KK++ R +  G  RGR + R     +L +K  KK++
Sbjct: 512 SDMMDTMDVENNSTLEKHSGKR-RKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRW 570

Query: 127 RSRG 130
           + RG
Sbjct: 571 QQRG 574


>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
          Length = 879

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 7/124 (5%)

Query: 13  TSDAVELANRSD--NSSDSSLFK-TQCIPYSPKGEKRNPIRKFVR-TPESVHASDSSSDS 68
           +SD  +L+N  +   +  SSL + +   P  P+ +K + +  F +  P S  A   SS +
Sbjct: 452 SSDFSDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQA 511

Query: 69  SFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLIDK--KKQF 126
           S     + ++      K+  KR +KK++ R +  G  RGR + R     +L +K  KK++
Sbjct: 512 SDMMDTMDVENNSTLEKHSGKR-RKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRW 570

Query: 127 RSRG 130
           + RG
Sbjct: 571 QQRG 574


>gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens]
          Length = 106

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 5/43 (11%)

Query: 87  RKKRYKKKKKRRYQPTG-----RPRGRPEGRRNPIYSLIDKKK 124
           +K+   + +K++ +PTG     RPRGRP+G +N   S   +KK
Sbjct: 25  QKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKK 67


>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
          Length = 109

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 5/43 (11%)

Query: 87  RKKRYKKKKKRRYQPTG-----RPRGRPEGRRNPIYSLIDKKK 124
           +K+   + +K++ +PTG     RPRGRP+G +N   S   +KK
Sbjct: 25  QKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKK 67


>gi|56090620 NFKB activating protein-like [Homo sapiens]
          Length = 402

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 6   IDSLDHV-TSDAVELANRSDNSSDSSLF-----KTQCIPYSPKGEKRNPIRKFVRTPESV 59
           +DS +H    D  E+ ++  +SSDS+       KT       K + ++  RK  +  +S 
Sbjct: 146 LDSDEHTPVEDEEEVTHQKSSSSDSNSEEHRKKKTSRSRNKKKRKNKSSKRKHRKYSDSD 205

Query: 60  HASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKKKR 97
             S+S ++S  +     +KA  ++ K + K  KKK K+
Sbjct: 206 SNSESDTNSDSDDDKKRVKAKKKKKKKKHKTKKKKNKK 243



 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 57  ESVHASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQ 100
           E  H   SSSDS+ E      K    R +N+KKR  K  KR+++
Sbjct: 159 EVTHQKSSSSDSNSEEHR---KKKTSRSRNKKKRKNKSSKRKHR 199


>gi|40786420 immunoglobulin-like domain containing receptor 2 [Homo
           sapiens]
          Length = 639

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 56  PESVHASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNP 115
           P  +  SDS+  S        I+A  ER   +   Y +K+  ++ P  R RGR     + 
Sbjct: 279 PPPLAPSDSTGGSHSVRKGYRIQADKERDSMKVLYYVEKELAQFDPARRMRGRYNNTISE 338

Query: 116 IYSLIDKKKQFRS-----RGSGFPFLESENEKNAPWRKILTFEQAVARG----FFNYIEK 166
           + SL ++   FR      R   FP           W  ++      +RG     +N  ++
Sbjct: 339 LSSLHEEDSNFRQSFHQMRSKQFPVSGDLESNPDYWSGVMGGSSGASRGPSAMEYNKEDR 398

Query: 167 LKYEHHLKESLKQM 180
             + H    S  +M
Sbjct: 399 ESFRHSQPRSKSEM 412


>gi|83715964 high-mobility group 20B [Homo sapiens]
          Length = 317

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 96  KRRYQPTGRPRGR--PEGRRNPIYSLI----DKKKQFRSRGSGFPFLESENEKNAPWRKI 149
           K+R  P G+ R +  P G + P+   +    ++++Q R+R    PF E      A W K+
Sbjct: 52  KKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKL 111

Query: 150 LTFEQAVARGFFNYIEKLKYEHHLKESLKQMNVGEDLENEDFDSRRYKFLDDDGSI 205
              E+   + + +  E+ K ++  +    Q +    +  E    ++ K  D    +
Sbjct: 112 QPTEK---QRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGL 164


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,661,259
Number of Sequences: 37866
Number of extensions: 529299
Number of successful extensions: 2156
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 1978
Number of HSP's gapped (non-prelim): 216
length of query: 278
length of database: 18,247,518
effective HSP length: 101
effective length of query: 177
effective length of database: 14,423,052
effective search space: 2552880204
effective search space used: 2552880204
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.