TAF1D 3040

Name: TAF1D	Sequence: fasta or formatted (278aa)		NCBI GI: 13129136
Description: TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa		Referenced in: RNA Polymerase and General Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.0 14 2 C cysteine 0.7 2 1 D aspartate 7.6 21 3 E glutamate 10.1 28 3 F phenylalanine 5.4 15 2 G glycine 4.7 13 1 H histidine 1.8 5 2 I isoleucine 5.4 15 1 K lysine 10.8 30 5 L leucine 6.5 18 1 M methionine 1.1 3 1 N asparagine 4.3 12 1 P proline 5.0 14 1 Q glutamine 2.2 6 1 R arginine 8.3 23 2 S serine 10.8 30 3 T threonine 4.0 11 1 V valine 3.2 9 1 W tryptophan 0.4 1 1 Y tyrosine 2.9 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 TATA box binding protein (TBP)-associated factor, RN... AGBL2 0.019 carboxypeptidase 2, cytosolic RYR2 0.017 cardiac muscle ryanodine receptor LOC653884 0.017 PREDICTED: similar to FUS interacting protein (seri... KRI1 0.015 KRI1 homolog MAGI1 0.015 membrane associated guanylate kinase, WW and PDZ dom... BARX2 0.013 BarH-like homeobox 2 MIER1 0.013 mesoderm induction early response 1 isoform g [Homo... MIER1 0.013 mesoderm induction early response 1 isoform i [Homo... MIER1 0.013 mesoderm induction early response 1 isoform h [Homo... MIER1 0.013 mesoderm induction early response 1 isoform a [Homo... MIER1 0.013 mesoderm induction early response 1 isoform f [Homo... MIER1 0.013 mesoderm induction early response 1 isoform e [Homo... MIER1 0.013 mesoderm induction early response 1 isoform d [Homo... MIER1 0.013 mesoderm induction early response 1 isoform c [Homo... MIER1 0.013 mesoderm induction early response 1 isoform b [Homo... MIER1 0.013 mesoderm induction early response 1 isoform a [Homo... ARL6IP4 0.013 SRp25 nuclear protein isoform 3 HCK 0.013 hemopoietic cell kinase isoform p61HCK FAM133A 0.013 hypothetical protein LOC286499 MYO1H 0.011 myosin 1H SYNCRIP 0.011 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.011 synaptotagmin binding, cytoplasmic RNA interacting ... SP100 0.011 nuclear antigen Sp100 isoform 1 SP100 0.011 nuclear antigen Sp100 isoform 2 HMGA2 0.011 high mobility group AT-hook 2 isoform b HMGA2 0.011 high mobility group AT-hook 2 isoform a NKAPL 0.011 NFKB activating protein-like ILDR2 0.009 immunoglobulin-like domain containing receptor 2 [Ho... HMG20B 0.009 high-mobility group 20B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.