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Search of human proteins with 13129060
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13129060 transmembrane protein 38A [Homo sapiens]
(299 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13129060 transmembrane protein 38A [Homo sapiens] 617 e-177
gi|8922461 transmembrane protein 38B [Homo sapiens] 245 4e-65
gi|18426973 DR1-associated protein 1 [Homo sapiens] 33 0.31
gi|149999365 matrix metalloproteinase 16 isoform 2 preproprotein... 32 0.52
gi|13027802 matrix metalloproteinase 16 isoform 1 preproprotein ... 32 0.52
gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens] 32 0.52
gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens] 32 0.68
gi|189083737 peroxisome biogenesis factor 26 [Homo sapiens] 30 3.4
gi|8923625 peroxisome biogenesis factor 26 [Homo sapiens] 30 3.4
gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 30 3.4
gi|24307887 one cut homeobox 1 [Homo sapiens] 30 3.4
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 29 4.4
gi|4507973 zinc finger protein of the cerebellum 3 [Homo sapiens] 29 4.4
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 29 5.8
gi|12232379 elongation of very long chain fatty acids-like 4 [Ho... 29 5.8
gi|4826834 matrix metalloproteinase 14 preproprotein [Homo sapiens] 28 7.5
gi|237649113 Rho-related BTB domain containing 2 isoform 3 [Homo... 28 7.5
gi|237649111 Rho-related BTB domain containing 2 isoform 2 [Homo... 28 7.5
gi|237649109 Rho-related BTB domain containing 2 isoform 1 [Homo... 28 7.5
gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regula... 28 7.5
gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regula... 28 7.5
gi|119220564 one cut domain, family member 2 [Homo sapiens] 28 7.5
gi|27734929 cyclic nucleotide binding domain containing 1 [Homo ... 28 7.5
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 28 7.5
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 28 7.5
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 28 7.5
gi|145309320 forkhead box Q1 [Homo sapiens] 28 9.8
gi|82659115 distal-less homeobox 6 [Homo sapiens] 28 9.8
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 28 9.8
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 28 9.8
>gi|13129060 transmembrane protein 38A [Homo sapiens]
Length = 299
Score = 617 bits (1592), Expect = e-177
Identities = 299/299 (100%), Positives = 299/299 (100%)
Query: 1 MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAML 60
MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAML
Sbjct: 1 MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAML 60
Query: 61 HCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVA 120
HCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVA
Sbjct: 61 HCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVA 120
Query: 121 MKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEI 180
MKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEI
Sbjct: 121 MKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEI 180
Query: 181 LHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDAL 240
LHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDAL
Sbjct: 181 LHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDAL 240
Query: 241 EGYICPVLFGSACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKAKKAD 299
EGYICPVLFGSACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKAKKAD
Sbjct: 241 EGYICPVLFGSACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKAKKAD 299
>gi|8922461 transmembrane protein 38B [Homo sapiens]
Length = 291
Score = 245 bits (625), Expect = 4e-65
Identities = 122/292 (41%), Positives = 192/292 (65%), Gaps = 14/292 (4%)
Query: 11 ELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAMLHCFGSYILAD 70
ELAL+FSR +FP FD+++++VS++ +K +PGA L+ ++PI+SW AMLHCFG IL+
Sbjct: 7 ELALAFSRTSMFPFFDIAHYLVSVMAVKRQPGAAALAWKNPISSWFTAMLHCFGGGILSC 66
Query: 71 LLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVAMKEVVRVRKI 130
LLL EP + + +N+++ILLAS++WY+ FFCP DL + +LPV+L+ MKEV R KI
Sbjct: 67 LLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASGMKEVTRTWKI 126
Query: 131 AVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEILHMSFPTKAS 190
G+ HA+ +Y +GW VMIA GW +G+G +++NFE+L++G WKPE +E L MS+P K +
Sbjct: 127 VGGVTHANSYYKNGWIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEWLKMSYPAKVT 186
Query: 191 LYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDALEGYICPVLFG 250
L G+++FT Q T+ L +SK +L+F++T+F+V+ K+ + T + + F E + +LFG
Sbjct: 187 LLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKITMMTTQTSTMTFAPFEDTLSWMLFG 246
Query: 251 -----SACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKAKK 297
S+C + S S G ++ +K + S+ +KK KK
Sbjct: 247 WQQPFSSC----EKKSEAKSPSNG-----VGSLASKPVDVASDNVKKKHTKK 289
>gi|18426973 DR1-associated protein 1 [Homo sapiens]
Length = 205
Score = 33.1 bits (74), Expect = 0.31
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 207 VSKASLIFIFTLFMVSCKVFL-----TATHSH-------SSPFDALEGYICPVLFGSACG 254
+S+A +F+ +L +C+V T T SH FD L+ + V G
Sbjct: 38 ISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDG 97
Query: 255 GDHHHDNHGGSHSGGGPGA---QHSAMPAKSKEELSEGSRKKKAKKAD 299
D+H D G+ G PG+ ++ M KSK++ G+ ++ +++
Sbjct: 98 EDNHMDGDKGARRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESE 145
>gi|149999365 matrix metalloproteinase 16 isoform 2 preproprotein
[Homo sapiens]
Length = 457
Score = 32.3 bits (72), Expect = 0.52
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 225 VFLTATHSHSSPFDALEGYICPVLF-GSACGGDHHHDN 261
+F + H SSPFD G++ F G GGD H D+
Sbjct: 187 IFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDS 224
>gi|13027802 matrix metalloproteinase 16 isoform 1 preproprotein
[Homo sapiens]
Length = 607
Score = 32.3 bits (72), Expect = 0.52
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 225 VFLTATHSHSSPFDALEGYICPVLF-GSACGGDHHHDN 261
+F + H SSPFD G++ F G GGD H D+
Sbjct: 187 IFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDS 224
>gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens]
Length = 645
Score = 32.3 bits (72), Expect = 0.52
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 19/74 (25%)
Query: 226 FLTATHSHSSPFDALEGYICPVLF-GSACGGDHHHD----------NHGGS--------H 266
F + H SSPFD G++ F G GGD H D NH G+
Sbjct: 224 FASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNANHDGNDLFLVAVHE 283
Query: 267 SGGGPGAQHSAMPA 280
G G +HS+ P+
Sbjct: 284 LGHALGLEHSSDPS 297
>gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens]
Length = 669
Score = 32.0 bits (71), Expect = 0.68
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 225 VFLTATHSHSSPFDALEGYICPVLF-GSACGGDHHHD 260
+F + H SSPFD G++ F G GGD H D
Sbjct: 200 LFASGFHGDSSPFDGTGGFLAHAYFPGPGLGGDTHFD 236
>gi|189083737 peroxisome biogenesis factor 26 [Homo sapiens]
Length = 305
Score = 29.6 bits (65), Expect = 3.4
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 154 VKGSGVALMSNFEQLLRGVWKPETNEILHMSFPTKASLYGAILFTLQQTRWLPVSKASLI 213
++GS + L+R +W + S P K SL A++ L R+ P S +SL
Sbjct: 221 LEGSVSHKFLSLPMLVRQLWDSAVSHFF--SLPFKKSLLAALILCLLVVRFDPASPSSLH 278
Query: 214 FIFTL 218
F++ L
Sbjct: 279 FLYKL 283
>gi|8923625 peroxisome biogenesis factor 26 [Homo sapiens]
Length = 305
Score = 29.6 bits (65), Expect = 3.4
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 154 VKGSGVALMSNFEQLLRGVWKPETNEILHMSFPTKASLYGAILFTLQQTRWLPVSKASLI 213
++GS + L+R +W + S P K SL A++ L R+ P S +SL
Sbjct: 221 LEGSVSHKFLSLPMLVRQLWDSAVSHFF--SLPFKKSLLAALILCLLVVRFDPASPSSLH 278
Query: 214 FIFTL 218
F++ L
Sbjct: 279 FLYKL 283
>gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
A [Homo sapiens]
Length = 353
Score = 29.6 bits (65), Expect = 3.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 257 HHHDNHGGSHSGGGPG 272
HHH +HGG+ GGG G
Sbjct: 203 HHHHHHGGAGHGGGAG 218
Score = 28.5 bits (62), Expect = 7.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 135 HHAHHHYHHG 144
HH HHH+HHG
Sbjct: 200 HHHHHHHHHG 209
>gi|24307887 one cut homeobox 1 [Homo sapiens]
Length = 465
Score = 29.6 bits (65), Expect = 3.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 232 SHSSPFDALEGYICPVLFGSACGGDHHHDNHGGSHSGGGP 271
SH P + +L G + GGD+HH + HS GP
Sbjct: 43 SHLPPAHPRSMGMASLLDGGSGGGDYHHHHRAPEHSLAGP 82
Score = 28.5 bits (62), Expect = 7.5
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 135 HHAHHHYHHGWFVMIATGWVKGS--------GVALMSN 164
HH HHH+HH G V GS G+A M+N
Sbjct: 126 HHHHHHHHHPHHHQRLAGNVSGSFTLMRDERGLASMNN 163
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
Length = 1343
Score = 29.3 bits (64), Expect = 4.4
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 135 HHAHHHYHHGWFVMIATGWVKGSGVALM---SNFEQLLRGVWKPETNEILH 182
HH HHH+HH G G A S E L GV KP ILH
Sbjct: 957 HHHHHHHHHH-----RGGEPPGDTFAPFHGYSKSEDLSSGVPKPPAASILH 1002
>gi|4507973 zinc finger protein of the cerebellum 3 [Homo sapiens]
Length = 467
Score = 29.3 bits (64), Expect = 4.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 131 AVGIHHAHHHYHH 143
A+G HH HHH+HH
Sbjct: 84 ALGHHHHHHHHHH 96
>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
Length = 1488
Score = 28.9 bits (63), Expect = 5.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 131 AVGIHHAHHHYHHG 144
A HH HHH+HHG
Sbjct: 1235 ASSTHHHHHHHHHG 1248
>gi|12232379 elongation of very long chain fatty acids-like 4 [Homo
sapiens]
Length = 314
Score = 28.9 bits (63), Expect = 5.8
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 28/140 (20%)
Query: 32 VSILYLKYE-PGAVELSRRHPIASWLCAMLHCFGS-----YILADLLLGE---------P 76
+S LYL + G + R P L +++ FG +I +L +G
Sbjct: 52 ISTLYLLFVWLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQ 111
Query: 77 LIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVAMKEVVRVRKIAVGIHH 136
+DY +N + +A+A+W+ +F + Y F ++R + V H
Sbjct: 112 SVDYSNNVHEVRIAAALWW--YFVSKGVEYLDTVFF-----------ILRKKNNQVSFLH 158
Query: 137 AHHHYHHGWFVMIATGWVKG 156
+HH I WV G
Sbjct: 159 VYHHCTMFTLWWIGIKWVAG 178
>gi|4826834 matrix metalloproteinase 14 preproprotein [Homo sapiens]
Length = 582
Score = 28.5 bits (62), Expect = 7.5
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 226 FLTATHSHSSPFDALEGYICPVLF-GSACGGDHHHDN 261
F H S+PFD G++ F G GGD H D+
Sbjct: 181 FAEGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDS 217
>gi|237649113 Rho-related BTB domain containing 2 isoform 3 [Homo
sapiens]
Length = 727
Score = 28.5 bits (62), Expect = 7.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 135 HHAHHHYHHG 144
HH HHH+HHG
Sbjct: 326 HHHHHHHHHG 335
>gi|237649111 Rho-related BTB domain containing 2 isoform 2 [Homo
sapiens]
Length = 734
Score = 28.5 bits (62), Expect = 7.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 135 HHAHHHYHHG 144
HH HHH+HHG
Sbjct: 333 HHHHHHHHHG 342
>gi|237649109 Rho-related BTB domain containing 2 isoform 1 [Homo
sapiens]
Length = 749
Score = 28.5 bits (62), Expect = 7.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 135 HHAHHHYHHG 144
HH HHH+HHG
Sbjct: 348 HHHHHHHHHG 357
>gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 2 [Homo sapiens]
Length = 754
Score = 28.5 bits (62), Expect = 7.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 135 HHAHHHYHHG 144
HH HHH+HHG
Sbjct: 602 HHHHHHHHHG 611
>gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 1 [Homo sapiens]
Length = 763
Score = 28.5 bits (62), Expect = 7.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 135 HHAHHHYHHG 144
HH HHH+HHG
Sbjct: 611 HHHHHHHHHG 620
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 28.5 bits (62), Expect = 7.5
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 248 LFGSACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGS 290
L G A GG GG GGGPG + + + S G+
Sbjct: 32 LHGPAGGGSGGGGGGGGGGGGGGPGHEQELLASPSPHHAGRGA 74
>gi|27734929 cyclic nucleotide binding domain containing 1 [Homo
sapiens]
Length = 436
Score = 28.5 bits (62), Expect = 7.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 153 WVKGSGVALMSNFEQLLRGVWKPETN 178
W+KGS V F +L+G+ +P+TN
Sbjct: 187 WLKGSTVVANDGFYVILKGLARPQTN 212
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 28.5 bits (62), Expect = 7.5
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 135 HHAHHHYHH 143
HHAHHH+HH
Sbjct: 30 HHAHHHHHH 38
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 28.5 bits (62), Expect = 7.5
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 135 HHAHHHYHH 143
HHAHHH+HH
Sbjct: 30 HHAHHHHHH 38
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 28.5 bits (62), Expect = 7.5
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 135 HHAHHHYHH 143
HHAHHH+HH
Sbjct: 30 HHAHHHHHH 38
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 28.1 bits (61), Expect = 9.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 245 CPVLFGSACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGS 290
C +A GG G +GGGPGA+ + A + ++EG+
Sbjct: 46 CAANSPAAGGGARDTQGDGEQSAGGGPGAEEAIPAAAAAAVVAEGA 91
>gi|82659115 distal-less homeobox 6 [Homo sapiens]
Length = 265
Score = 28.1 bits (61), Expect = 9.8
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 131 AVGIHHAHHHYHH 143
A G HH HHH HH
Sbjct: 54 AAGSHHHHHHQHH 66
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 28.1 bits (61), Expect = 9.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Query: 245 CPVLFGSACGGDHHHDNHGGSHSGGGPGAQ 274
CP C HGG GGGPG Q
Sbjct: 599 CPARRRGGCWPRRPRRRHGGGGGGGGPGLQ 628
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 28.1 bits (61), Expect = 9.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Query: 245 CPVLFGSACGGDHHHDNHGGSHSGGGPGAQ 274
CP C HGG GGGPG Q
Sbjct: 599 CPARRRGGCWPRRPRRRHGGGGGGGGPGLQ 628
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,529,935
Number of Sequences: 37866
Number of extensions: 504179
Number of successful extensions: 3365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3161
Number of HSP's gapped (non-prelim): 187
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.