Guide to the Human Genome
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Name: LPO Sequence: fasta or formatted (712aa) NCBI GI: 40549418
Description:

lactoperoxidase isoform 1 preproprotein

Referenced in:

Mammary Tissues
Superoxide Pathway

Other entries for this name:
alt prot [629aa] lactoperoxidase isoform 3 preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         50           3
 C cysteine            2.2         16           1
 D aspartate           5.6         40           1
 E glutamate           4.8         34           2
 F phenylalanine       4.6         33           2
 G glycine             5.9         42           2
 H histidine           1.8         13           1
 I isoleucine          3.8         27           2
 K lysine              5.2         37           2
 L leucine            11.8         84           2
 M methionine          2.0         14           2
 N asparagine          4.5         32           2
 P proline             7.2         51           2
 Q glutamine           4.5         32           2
 R arginine            6.9         49           2
 S serine              7.4         53           2
 T threonine           5.6         40           2
 V valine              4.5         32           2
 W tryptophan          2.0         14           2
 Y tyrosine            2.7         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lactoperoxidase isoform 1 preproprotein 
LPO                   0.863   lactoperoxidase isoform 3 preproprotein 
MPO                   0.494   myeloperoxidase 
EPX                   0.488   eosinophil peroxidase 
TPO                   0.358   thyroid peroxidase isoform a 
TPO                   0.358   thyroid peroxidase isoform d 
TPO                   0.297   thyroid peroxidase isoform b 
PXDN                  0.296   peroxidasin 
PXDNL                 0.259   peroxidasin homolog-like 
TPO                   0.185   thyroid peroxidase isoform e 
DUOX1                 0.067   dual oxidase 1 precursor 
DUOX1                 0.067   dual oxidase 1 precursor 
DUOX2                 0.064   dual oxidase 2 precursor 
PTGS1                 0.017   prostaglandin-endoperoxide synthase 1 isoform 1 prec...
PTGS2                 0.015   prostaglandin-endoperoxide synthase 2 precursor [Homo...
PTGS1                 0.012   prostaglandin-endoperoxide synthase 1 isoform 2 prec...
TERF1                 0.004   telomeric repeat binding factor 1 isoform 1 
MCM4                  0.004   minichromosome maintenance complex component 4 [Homo...
MCM4                  0.004   minichromosome maintenance complex component 4 [Homo...
IGF1R                 0.004   insulin-like growth factor 1 receptor precursor [Homo...
ITSN1                 0.004   intersectin 1 isoform ITSN-s 
ITSN1                 0.004   intersectin 1 isoform ITSN-l 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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