Guide to the Human Genome
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Name: MBL2 Sequence: fasta or formatted (248aa) NCBI GI: 4557739
Description:

soluble mannose-binding lectin precursor

Referenced in:

Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         18           2
 C cysteine            2.8          7           1
 D aspartate           4.4         11           1
 E glutamate           6.9         17           2
 F phenylalanine       4.0         10           2
 G glycine            12.5         31           1
 H histidine           0.4          1           1
 I isoleucine          3.2          8           1
 K lysine              7.7         19           2
 L leucine             9.3         23           4
 M methionine          1.6          4           1
 N asparagine          5.6         14           2
 P proline             8.1         20           2
 Q glutamine           4.0         10           1
 R arginine            2.4          6           1
 S serine              7.3         18           2
 T threonine           6.0         15           1
 V valine              4.4         11           1
 W tryptophan          1.2          3           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   soluble mannose-binding lectin precursor 
SFTPD                 0.303   pulmonary surfactant-associated protein D precursor ...
SFTPA1B               0.250   surfactant, pulmonary-associated protein A1B 
SFTPA2                0.250   surfactant protein A2 
SFTPA2B               0.250   surfactant, pulmonary-associated protein A2 
SFTPA1                0.234   surfactant protein A1 
COLEC11               0.176   collectin sub-family member 11 isoform a 
COLEC10               0.168   collectin sub-family member 10 
COLEC12               0.160   collectin sub-family member 12 
COLEC11               0.156   collectin sub-family member 11 isoform b 
CLEC3A                0.107   C-type lectin domain family 3 member A 
ADIPOQ                0.102   adiponectin precursor 
COL4A4                0.100   alpha 4 type IV collagen precursor 
COL14A1               0.100   collagen, type XIV, alpha 1 
COL5A1                0.098   alpha 1 type V collagen preproprotein 
COL11A2               0.098   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.098   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.098   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL3A1                0.094   collagen type III alpha 1 preproprotein 
COL21A1               0.094   collagen, type XXI, alpha 1 precursor 
COL4A3                0.092   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.092   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.092   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.092   alpha 3 type IV collagen isoform 1 precursor 
COL25A1               0.092   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.092   collagen, type XXV, alpha 1 isoform 2 
COL27A1               0.092   collagen, type XXVII, alpha 1 
COL9A2                0.092   alpha 2 type IX collagen 
COL5A2                0.092   alpha 2 type V collagen preproprotein 
COL7A1                0.092   alpha 1 type VII collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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