Guide to the Human Genome
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Name: THOP1 Sequence: fasta or formatted (689aa) NCBI GI: 4507491
Description:

thimet oligopeptidase 1

Referenced in:

Peptide-processing Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         54           2
 C cysteine            2.3         16           1
 D aspartate           5.5         38           1
 E glutamate           9.3         64           2
 F phenylalanine       4.1         28           1
 G glycine             5.8         40           2
 H histidine           2.9         20           2
 I isoleucine          2.8         19           1
 K lysine              5.5         38           3
 L leucine            11.2         77           2
 M methionine          2.8         19           1
 N asparagine          2.8         19           1
 P proline             4.4         30           2
 Q glutamine           5.5         38           2
 R arginine            6.8         47           2
 S serine              4.6         32           1
 T threonine           4.9         34           2
 V valine              6.2         43           2
 W tryptophan          1.0          7           1
 Y tyrosine            3.8         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thimet oligopeptidase 1 
NLN                   0.638   neurolysin 
MIPEP                 0.126   mitochondrial intermediate peptidase 
GOLGA4                0.011   golgi autoantigen, golgin subfamily a, 4 
MYO5C                 0.009   myosin VC 
SYCP1                 0.009   synaptonemal complex protein 1 
EVI1                  0.007   ecotropic viral integration site 1 isoform a 
EVI1                  0.007   ecotropic viral integration site 1 isoform b 
EVI1                  0.007   ecotropic viral integration site 1 isoform b 
ROCK1                 0.006   Rho-associated, coiled-coil containing protein kinase...
AKAP9                 0.006   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.006   A-kinase anchor protein 9 isoform 3 
SUPT6H                0.006   suppressor of Ty 6 homolog 
SYNE2                 0.005   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.005   spectrin repeat containing, nuclear envelope 2 isof...
NUCB1                 0.005   nucleobindin 1 
LOC653720             0.005   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.005   PREDICTED: similar to Golgin subfamily A member 8-l...
CEP164                0.005   centrosomal protein 164kDa 
MYH11                 0.005   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.005   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.005   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.005   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
LOC283767             0.005   golgi autoantigen, golgin subfamily a-like 
SP100                 0.005   nuclear antigen Sp100 isoform 1 
SP100                 0.005   nuclear antigen Sp100 isoform 2 
CALD1                 0.004   caldesmon 1 isoform 5 
CALD1                 0.004   caldesmon 1 isoform 4 
CALD1                 0.004   caldesmon 1 isoform 3 
CALD1                 0.004   caldesmon 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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