Guide to the Human Genome
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Name: EVI1 Sequence: fasta or formatted (1051aa) NCBI GI: 157364945
Description:

ecotropic viral integration site 1 isoform b

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt mRNA [1051aa] ecotropic viral integration site 1 isoform b
alt prot [1115aa] ecotropic viral integration site 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         56           3
 C cysteine            2.5         26           1
 D aspartate           5.7         60           2
 E glutamate           8.4         88           3
 F phenylalanine       4.8         50           2
 G glycine             4.8         50           2
 H histidine           4.7         49           1
 I isoleucine          2.9         31           1
 K lysine              7.7         81           2
 L leucine             7.7         81           2
 M methionine          2.7         28           2
 N asparagine          4.1         43           2
 P proline             7.0         74           2
 Q glutamine           4.5         47           2
 R arginine            4.7         49           2
 S serine             12.1        127           3
 T threonine           4.9         52           2
 V valine              3.1         33           1
 W tryptophan          0.3          3           1
 Y tyrosine            2.2         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ecotropic viral integration site 1 isoform b 
EVI1                  1.000   ecotropic viral integration site 1 isoform a 
EVI1                  1.000   ecotropic viral integration site 1 isoform b 
PRDM16                0.483   PR domain containing 16 isoform 1 
PRDM16                0.467   PR domain containing 16 isoform 2 
LOC100290519          0.464   PREDICTED: hypothetical protein XP_002346939 
ZNF595                0.069   zinc finger protein 595 
ZNF569                0.067   zinc finger protein 569 
ZNF431                0.067   zinc finger protein 431 
ZNF429                0.067   zinc finger protein 429 
ZNF107                0.067   zinc finger protein 107 
ZNF107                0.067   zinc finger protein 107 
ZNF43                 0.067   zinc finger protein 43 
ZNF273                0.067   zinc finger protein 273 
ZNF761                0.067   zinc finger protein 761 
ZNF184                0.067   zinc finger protein 184 
ZNF714                0.066   zinc finger protein 714 
ZNF91                 0.066   zinc finger protein 91 
ZNF468                0.066   zinc finger protein ZNF468 isoform 1 
ZNF468                0.066   zinc finger protein ZNF468 isoform 2 
ZNF727                0.066   zinc finger protein 727 
ZNF493                0.066   zinc finger protein 493 isoform 1 
ZNF493                0.066   zinc finger protein 493 isoform 3 
LOC100294071          0.066   PREDICTED: similar to zinc finger protein 208 [Homo...
ZNF845                0.066   zinc finger protein 845 
ZNF502                0.066   zinc finger protein 502 
ZNF502                0.066   zinc finger protein 502 
ZNF502                0.066   zinc finger protein 502 
ZNF502                0.066   zinc finger protein 502 
ZNF728                0.066   PREDICTED: zinc finger protein 728 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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