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Search of human proteins with 4507267
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507267 stanniocalcin 2 precursor [Homo sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507267 stanniocalcin 2 precursor [Homo sapiens] 629 0.0
gi|4507265 stanniocalcin 1 precursor [Homo sapiens] 136 2e-32
gi|40068065 hypothetical protein LOC54058 [Homo sapiens] 37 0.021
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 37 0.028
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 35 0.081
gi|239752864 PREDICTED: hypothetical protein [Homo sapiens] 35 0.081
gi|239747416 PREDICTED: hypothetical protein XP_002346693 [Homo ... 35 0.081
gi|60097902 filaggrin [Homo sapiens] 34 0.14
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 34 0.14
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 34 0.14
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 34 0.14
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 34 0.18
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 34 0.18
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 34 0.18
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 34 0.18
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 34 0.18
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 34 0.18
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 34 0.18
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 34 0.18
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 34 0.18
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens] 34 0.18
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens] 34 0.18
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens] 34 0.18
gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens] 34 0.18
gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens] 34 0.18
gi|239757101 PREDICTED: hypothetical protein [Homo sapiens] 33 0.24
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens] 33 0.24
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 33 0.24
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 33 0.24
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 33 0.24
>gi|4507267 stanniocalcin 2 precursor [Homo sapiens]
Length = 302
Score = 629 bits (1622), Expect = 0.0
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MCAERLGQFMTLALVLATFDPARGTDATNPPEGPQDRSSQQKGRLSLQNTAEIQHCLVNA 60
MCAERLGQFMTLALVLATFDPARGTDATNPPEGPQDRSSQQKGRLSLQNTAEIQHCLVNA
Sbjct: 1 MCAERLGQFMTLALVLATFDPARGTDATNPPEGPQDRSSQQKGRLSLQNTAEIQHCLVNA 60
Query: 61 GDVGCGVFECFENNSCEIRGLHGICMTFLHNAGKFDAQGKSFIKDALKCKAHALRHRFGC 120
GDVGCGVFECFENNSCEIRGLHGICMTFLHNAGKFDAQGKSFIKDALKCKAHALRHRFGC
Sbjct: 61 GDVGCGVFECFENNSCEIRGLHGICMTFLHNAGKFDAQGKSFIKDALKCKAHALRHRFGC 120
Query: 121 ISRKCPAIREMVSQLQRECYLKHDLCAAAQENTRVIVEMIHFKDLLLHEPYVDLVNLLLT 180
ISRKCPAIREMVSQLQRECYLKHDLCAAAQENTRVIVEMIHFKDLLLHEPYVDLVNLLLT
Sbjct: 121 ISRKCPAIREMVSQLQRECYLKHDLCAAAQENTRVIVEMIHFKDLLLHEPYVDLVNLLLT 180
Query: 181 CGEEVKEAITHSVQVQCEQNWGSLCSILSFCTSAIQKPPTAPPERQPQVDRTKLSRAHHG 240
CGEEVKEAITHSVQVQCEQNWGSLCSILSFCTSAIQKPPTAPPERQPQVDRTKLSRAHHG
Sbjct: 181 CGEEVKEAITHSVQVQCEQNWGSLCSILSFCTSAIQKPPTAPPERQPQVDRTKLSRAHHG 240
Query: 241 EAGHHLPEPSSRETGRGAKGERGSKSHPNAHARGRVGGLGAQGPSGSSEWEDEQSEYSDI 300
EAGHHLPEPSSRETGRGAKGERGSKSHPNAHARGRVGGLGAQGPSGSSEWEDEQSEYSDI
Sbjct: 241 EAGHHLPEPSSRETGRGAKGERGSKSHPNAHARGRVGGLGAQGPSGSSEWEDEQSEYSDI 300
Query: 301 RR 302
RR
Sbjct: 301 RR 302
>gi|4507265 stanniocalcin 1 precursor [Homo sapiens]
Length = 247
Score = 136 bits (343), Expect = 2e-32
Identities = 65/173 (37%), Positives = 103/173 (59%)
Query: 36 DRSSQQKGRLSLQNTAEIQHCLVNAGDVGCGVFECFENNSCEIRGLHGICMTFLHNAGKF 95
D S +K R++ QN+AE+ CL +A VGCG F C EN++C+ G++ IC +FL++A KF
Sbjct: 25 DSVSPRKSRVAAQNSAEVVRCLNSALQVGCGAFACLENSTCDTDGMYDICKSFLYSAAKF 84
Query: 96 DAQGKSFIKDALKCKAHALRHRFGCISRKCPAIREMVSQLQRECYLKHDLCAAAQENTRV 155
D QGK+F+K++LKC A+ + + R+C + M++++Q ECY K ++C+ A+ N
Sbjct: 85 DTQGKAFVKESLKCIANGVTSKVFLAIRRCSTFQRMIAEVQEECYSKLNVCSIAKRNPEA 144
Query: 156 IVEMIHFKDLLLHEPYVDLVNLLLTCGEEVKEAITHSVQVQCEQNWGSLCSIL 208
I E++ + + Y LV LL C E+ I S+ + N SL IL
Sbjct: 145 ITEVVQLPNHFSNRYYNRLVRSLLECDEDTVSTIRDSLMEKIGPNMASLFHIL 197
>gi|40068065 hypothetical protein LOC54058 [Homo sapiens]
Length = 322
Score = 37.0 bits (84), Expect = 0.021
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 173 DLVNLLLTCGEEVKEAITHSVQVQCEQNWGSLCSILSFCTSAIQKPPTAPPERQPQVDRT 232
D+V LLL +V + + QNW +L A+Q PP PP R P+ R
Sbjct: 241 DMVELLLLQNAQVHQLVL--------QNW-----MLKALPPALQDPPHVPP-RVPRAARP 286
Query: 233 KLSRAHHGEAGHHLPEPSSRET 254
+L HH HH P T
Sbjct: 287 RLPAVHHHHHHHHAVWPPGAAT 308
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 36.6 bits (83), Expect = 0.028
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 17/76 (22%)
Query: 218 PPTAPPERQPQVDRTKLSRAHHGEAGHH-------LPEPSSRETGRGAKGERGSKSHPNA 270
PP P R+ A HG GH +P P E G KG +G + A
Sbjct: 1541 PPGTPGSRR--------KTAAHGRRGHTGPQGTAGIPGPDGLEGSLGLKGPQGPRGE--A 1590
Query: 271 HARGRVGGLGAQGPSG 286
+G GG+G++GP G
Sbjct: 1591 GVKGEKGGVGSKGPQG 1606
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 35.0 bits (79), Expect = 0.081
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 238 HHGEAGHHLPEPSSRETGRGAKGERGSKSHPNAHARGRVGGLGAQGPSG 286
HH HLP PS+ G A+G RG A G GGLGA +G
Sbjct: 268 HHAAPPLHLPAPSAATAGAKARGARGG-------AGGAGGGLGAAAAAG 309
>gi|239752864 PREDICTED: hypothetical protein [Homo sapiens]
Length = 386
Score = 35.0 bits (79), Expect = 0.081
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 206 SILSFCTSAIQKPPTAPPERQP--QVDRTKLSRAHHGEAGHHLPEPSSRETGRGAKGERG 263
S+L + +S + P + PP +Q +V RA HG G LP P S GRG +G
Sbjct: 95 SLLPWASSVL--PDSGPPRQQRLNKVAEVPPPRAAHGR-GTQLPAPGSGLRGRGQRGRLS 151
Query: 264 SKSHPNAHARGRVGGLG 280
+ + AR + G G
Sbjct: 152 AATWRRGPARAELAGSG 168
>gi|239747416 PREDICTED: hypothetical protein XP_002346693 [Homo
sapiens]
Length = 386
Score = 35.0 bits (79), Expect = 0.081
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 206 SILSFCTSAIQKPPTAPPERQP--QVDRTKLSRAHHGEAGHHLPEPSSRETGRGAKGERG 263
S+L + +S + P + PP +Q +V RA HG G LP P S GRG +G
Sbjct: 95 SLLPWASSVL--PDSGPPRQQRLNKVAEVPPPRAAHGR-GTQLPAPGSGLRGRGQRGRLS 151
Query: 264 SKSHPNAHARGRVGGLG 280
+ + AR + G G
Sbjct: 152 AATWRRGPARAELAGSG 168
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 34.3 bits (77), Expect = 0.14
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 230 DRTKLSRAHHGEAGHHLPEPSSRETGRGAKGERGSKSHPNAHARGRVGGLGAQGPSGS 287
D ++ S HH E+ H SS E R + GER H + R G+G + S +
Sbjct: 1324 DSSRQSGTHHTESSSHGQAVSSHEQARSSPGERHGSRHQQSADSSRHSGIGHRQASSA 1381
Score = 30.0 bits (66), Expect = 2.6
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 230 DRTKLSRAHHGEAGHHLPEPSSRETGRGAKGERGSKSHPNAHARGRVGGL----GAQGPS 285
DR++ S H E SS E R + GER H + R G+ +
Sbjct: 3269 DRSRQSGTRHAETSSGGQAASSHEQARSSPGERHGSRHQQSADSSRHSGIPRGQASSAVR 3328
Query: 286 GSSEWEDEQSEYSD 299
S W S+ SD
Sbjct: 3329 DSRHWGSSGSQASD 3342
Score = 29.6 bits (65), Expect = 3.4
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 230 DRTKLSRAHHGEAGHHLPEPSSRETGRGAKGERGSKSHP--------NAHARGR----VG 277
D ++ S H E SS E R + GER H +A RG+ V
Sbjct: 351 DSSRQSGTRHAETSSRGQTASSHEQARSSPGERHGSGHQQSADSSRHSATGRGQASSAVS 410
Query: 278 GLGAQGPSGSSEWEDE-QSEYSD 299
G +G SGS + E SE SD
Sbjct: 411 DRGHRGSSGSQASDSEGHSENSD 433
Score = 29.6 bits (65), Expect = 3.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 230 DRTKLSRAHHGEAGHHLPEPSSRETGRGAKGERGSKS 266
D S + HG+AGHH + S +E+ R GER +S
Sbjct: 756 DSDTQSVSGHGQAGHH--QQSHQESARDRSGERSRRS 790
Score = 29.3 bits (64), Expect = 4.5
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 230 DRTKLSRAHHGEAGHHLPEPSSRETGRGAKGERGSKSHPNAHARGRVGGL---------- 279
+ ++ S HH E SS E R + GER H + R G+
Sbjct: 2297 ESSRQSGTHHAENSSGGQAASSHEQARSSAGERHGSHHQQSADSSRHSGIGHGQASSAVR 2356
Query: 280 --GAQGPSGSSEWEDE-QSEYSD 299
G +G SGS + E SE SD
Sbjct: 2357 DSGHRGSSGSQASDSEGHSEDSD 2379
Score = 29.3 bits (64), Expect = 4.5
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 230 DRTKLSRAHHGEAGHHLPEPSSRETGRGAKGERGSKSHPNAHARGRVGGL---------- 279
+ ++ S HH E SS E R + GER H + R G+
Sbjct: 3593 ESSRQSGTHHAENSSGGQAASSHEQARSSAGERHGSHHQQSADSSRHSGIGHGQASSAVR 3652
Query: 280 --GAQGPSGSSEWEDE-QSEYSD 299
G +G SGS + E SE SD
Sbjct: 3653 DSGHRGSSGSQASDSEGHSEDSD 3675
Score = 28.5 bits (62), Expect = 7.6
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 235 SRAHHGEAGHHLPEPSSRETGRGAKGERGSKS-HPNAHARG------RVGGLGAQGPSGS 287
S A HG +G +R + G R S S H A +R +VG ++GP S
Sbjct: 2501 SDASHGHSGSRSASRQTRNDEQSGDGSRHSGSRHHEASSRADSSGHSQVGQGQSEGPRTS 2560
Query: 288 SEWEDEQSEYSD 299
W S+ SD
Sbjct: 2561 RNWGSSFSQDSD 2572
Score = 28.1 bits (61), Expect = 10.0
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 230 DRTKLSRAHHGEAGHHLPEPSSRETGRGAKGERGSKSHPNAHARGRVGGLGAQGPSG--- 286
D ++ S H E SS E R + GER H + R G+ + S
Sbjct: 1000 DSSRQSGTPHAETSSGGQAASSHEQARSSPGERHGSRHQQSADSSRHSGIPRRQASSAVR 1059
Query: 287 -SSEWEDEQSEYSD 299
S W S+ SD
Sbjct: 1060 DSGHWGSSGSQASD 1073
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 34.3 bits (77), Expect = 0.14
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 240 GEAGHHLPEPSSRETGRGAKGERGSKSHPNAHARGRVGGLGAQGPSGSS 288
G G P + G G KGERG+ P H G G G+ GP GSS
Sbjct: 624 GREGPMGPRGEAGPPGSGEKGERGAAGEPGPH--GPPGVPGSVGPKGSS 670
Score = 29.6 bits (65), Expect = 3.4
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 246 LPEPSSRETGRGAKGERGSKSHPNAHA----RGRVGGLGAQ---GPSGSSE 289
+P P +G KG++GS P RGR G +G + GP GS E
Sbjct: 592 IPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGE 642
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 34.3 bits (77), Expect = 0.14
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 236 RAHHGEAGHHLPEPSSRETGRGAKGERGSKSHPNAHARGRVGGLGAQGPSGSSEWEDEQ 294
R GE G P P ++ G +G +GSK RG G GAQGP G + +Q
Sbjct: 372 RGERGEPG--APGPKGKQGESGTRGPKGSKGD-----RGEKGDSGAQGPRGPPGQKGDQ 423
Score = 30.0 bits (66), Expect = 2.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 257 GAKGERGSKSHPNAHARGRVGGLGAQGPSGSS 288
G KGERG P RG G G +G G S
Sbjct: 359 GTKGERGEAGPPGRGERGEPGAPGPKGKQGES 390
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 34.3 bits (77), Expect = 0.14
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 236 RAHHGEAGHHLPEPSSRETGRGAKGERGSKSHPNAHARGRVGGLGAQGPSGSSEWEDEQ 294
R GE G P P ++ G +G +GSK RG G GAQGP G + +Q
Sbjct: 372 RGERGEPG--APGPKGKQGESGTRGPKGSKGD-----RGEKGDSGAQGPRGPPGQKGDQ 423
Score = 30.0 bits (66), Expect = 2.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 257 GAKGERGSKSHPNAHARGRVGGLGAQGPSGSS 288
G KGERG P RG G G +G G S
Sbjct: 359 GTKGERGEAGPPGRGERGEPGAPGPKGKQGES 390
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 513 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 572
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 573 EGPPGPPG 580
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 451 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 510
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 511 EGPPGPPG 518
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 453 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 512
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 513 EGPPGPPG 520
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 456 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 515
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 516 EGPPGPPG 523
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 460 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 519
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 520 EGPPGPPG 527
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 494 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 553
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 554 EGPPGPPG 561
Score = 30.8 bits (68), Expect = 1.5
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHH-------LPEPSSRETGRGAKGERGSKSHPNAHARGR 275
P+ + +D K + GE G P P G KGERGSK P
Sbjct: 568 PKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTG 627
Query: 276 VGGL-GAQGPSG 286
GL G GP G
Sbjct: 628 AAGLPGLHGPPG 639
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 472 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 531
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 532 EGPPGPPG 539
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 484 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 543
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 544 EGPPGPPG 551
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 491 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 550
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 551 EGPPGPPG 558
>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
Length = 698
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 494 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 553
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 554 EGPPGPPG 561
>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
Length = 700
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 496 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 555
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 556 EGPPGPPG 563
>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
Length = 705
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 501 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 560
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 561 EGPPGPPG 568
>gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens]
Length = 717
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 513 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 572
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 573 EGPPGPPG 580
>gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens]
Length = 705
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGR----GAKGERGSKSHPNAHARGRVGG 278
P+ P D + +G G + ETG+ G KGE G K +P A G G
Sbjct: 513 PQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP 572
Query: 279 LGAQGPSG 286
G GP G
Sbjct: 573 EGPPGPPG 580
Score = 30.8 bits (68), Expect = 1.5
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 223 PERQPQVDRTKLSRAHHGEAGHH-------LPEPSSRETGRGAKGERGSKSHPNAHARGR 275
P+ + +D K + GE G P P G KGERGSK P
Sbjct: 587 PKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTG 646
Query: 276 VGGL-GAQGPSG 286
GL G GP G
Sbjct: 647 AAGLPGLHGPPG 658
>gi|239757101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 309
Score = 33.5 bits (75), Expect = 0.24
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 217 KPPTAPPERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGRGAKGERGSKSHPNAHAR--- 273
KPP+ P+ QP DR ++ R AG P + RET G SH A AR
Sbjct: 18 KPPSMAPQSQP--DRGRVRRLVTNCAGSG-PPGAPRETESARTGTEDYNSHTTARARAIQ 74
Query: 274 GRVGG 278
GR GG
Sbjct: 75 GRAGG 79
>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 33.5 bits (75), Expect = 0.24
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 211 CTSAIQKPPTAPPERQPQVDRTKLSRAHHGEAGHHLPEPSSRETGRGAKGERGSKSHPN- 269
CT PP+AP + P R + R H A +P S GRG G R H +
Sbjct: 24 CTRVGSSPPSAPLPQTPPTKRPERFRLHSPRAPGS-AQPISAPEGRGGAGSRSRYCHGDG 82
Query: 270 ---AHARGRVG 277
A A G VG
Sbjct: 83 KLAAAAAGTVG 93
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 33.5 bits (75), Expect = 0.24
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 247 PEPSSRETGRGAKGERGSKSHPNAHAR-GRVGGLGAQGPSG 286
P P +GAKG+RG+ P R G +G G +GP+G
Sbjct: 1179 PGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTG 1219
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 33.5 bits (75), Expect = 0.24
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 247 PEPSSRETGRGAKGERGSKSHPNAHAR-GRVGGLGAQGPSG 286
P P +GAKG+RG+ P R G +G G +GP+G
Sbjct: 1179 PGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTG 1219
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 33.5 bits (75), Expect = 0.24
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 247 PEPSSRETGRGAKGERGSKSHPNAHAR-GRVGGLGAQGPSG 286
P P +GAKG+RG+ P R G +G G +GP+G
Sbjct: 1179 PGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTG 1219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,371,643
Number of Sequences: 37866
Number of extensions: 661039
Number of successful extensions: 3242
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 2746
Number of HSP's gapped (non-prelim): 629
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.