Guide to the Human Genome
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Name: C21orf58 Sequence: fasta or formatted (322aa) NCBI GI: 40068065
Description:

hypothetical protein LOC54058

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         33           2
 C cysteine            0.3          1           1
 D aspartate           3.4         11           2
 E glutamate           4.3         14           1
 F phenylalanine       0.9          3           2
 G glycine             6.5         21           3
 H histidine           4.0         13           8
 I isoleucine          2.5          8           2
 K lysine              2.8          9           1
 L leucine            14.0         45           4
 M methionine          1.2          4           1
 N asparagine          1.9          6           1
 P proline            16.5         53           3
 Q glutamine           7.8         25           2
 R arginine            7.1         23           3
 S serine              6.2         20           2
 T threonine           4.3         14           1
 V valine              3.4         11           1
 W tryptophan          2.5          8           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54058 
BRD4                  0.045   bromodomain-containing protein 4 isoform long 
RBM33                 0.037   RNA binding motif protein 33 
WIPF1                 0.031   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.031   WAS/WASL interacting protein family, member 1 
TRIM66                0.031   tripartite motif-containing 66 
PRR12                 0.031   proline rich 12 
MLL2                  0.029   myeloid/lymphoid or mixed-lineage leukemia 2 
GNAS                  0.028   GNAS complex locus alex 
FHOD1                 0.028   formin homology 2 domain containing 1 
RFX1                  0.026   regulatory factor X1 
WASF1                 0.026   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.026   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.026   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.026   Wiskott-Aldrich syndrome protein family member 1 [Hom...
WNK2                  0.026   WNK lysine deficient protein kinase 2 
MKL1                  0.026   megakaryoblastic leukemia 1 protein 
MYPOP                 0.026   Myb protein P42POP 
TTN                   0.026   titin isoform N2-A 
RAPH1                 0.026   Ras association and pleckstrin homology domains 1 is...
DAAM1                 0.026   dishevelled-associated activator of morphogenesis 1 ...
IQSEC2                0.025   IQ motif and Sec7 domain 2 isoform1 
SON                   0.025   SON DNA-binding protein isoform F 
SON                   0.025   SON DNA-binding protein isoform B 
SNX26                 0.023   sorting nexin 26 
KIAA1522              0.023   hypothetical protein LOC57648 
GATA6                 0.023   GATA binding protein 6 
MED15                 0.023   mediator complex subunit 15 isoform b 
FOXG1                 0.023   forkhead box G1 
SPEG                  0.023   SPEG complex locus 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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