Guide to the Human Genome
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Name: STC2 Sequence: fasta or formatted (302aa) NCBI GI: 4507267
Description:

stanniocalcin 2 precursor

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         25           3
 C cysteine            5.0         15           1
 D aspartate           4.0         12           1
 E glutamate           7.9         24           2
 F phenylalanine       3.3         10           1
 G glycine             8.6         26           2
 H histidine           5.0         15           2
 I isoleucine          4.0         12           1
 K lysine              4.6         14           1
 L leucine             8.6         26           3
 M methionine          1.7          5           1
 N asparagine          3.3         10           2
 P proline             5.0         15           2
 Q glutamine           6.0         18           2
 R arginine            7.0         21           2
 S serine              7.3         22           2
 T threonine           4.3         13           1
 V valine              4.6         14           1
 W tryptophan          0.7          2           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stanniocalcin 2 precursor 
STC1                  0.184   stanniocalcin 1 precursor 
C21orf58              0.020   hypothetical protein LOC54058 
COL6A6                0.020   collagen type VI alpha 6 
CECR6                 0.017   cat eye syndrome chromosome region, candidate 6 isof...
LOC100293235          0.017   PREDICTED: hypothetical protein 
LOC100291469          0.017   PREDICTED: hypothetical protein XP_002346693 
FLG                   0.015   filaggrin 
COL17A1               0.015   alpha 1 type XVII collagen 
COL25A1               0.015   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.015   collagen, type XXV, alpha 1 isoform 2 
COL13A1               0.015   alpha 1 type XIII collagen isoform 20 
COL13A1               0.015   alpha 1 type XIII collagen isoform 18 
COL13A1               0.015   alpha 1 type XIII collagen isoform 17 
COL13A1               0.015   alpha 1 type XIII collagen isoform 16 
COL13A1               0.015   alpha 1 type XIII collagen isoform 14 
COL13A1               0.015   alpha 1 type XIII collagen isoform 11 
COL13A1               0.015   alpha 1 type XIII collagen isoform 10 
COL13A1               0.015   alpha 1 type XIII collagen isoform 9 
COL13A1               0.015   alpha 1 type XIII collagen isoform 5 
COL13A1               0.015   alpha 1 type XIII collagen isoform 4 
COL13A1               0.015   alpha 1 type XIII collagen isoform 3 
COL13A1               0.015   alpha 1 type XIII collagen isoform 2 
COL13A1               0.015   alpha 1 type XIII collagen isoform 1 
COL13A1               0.015   alpha 1 type XIII collagen isoform 8 
LOC100292824          0.013   PREDICTED: hypothetical protein 
LOC388279             0.013   PREDICTED: hypothetical protein 
COL4A3                0.013   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.013   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.013   alpha 3 type IV collagen isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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