Guide to the Human Genome
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Name: LOC100293235 Sequence: fasta or formatted (386aa) NCBI GI: 239752864
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         35           2
 C cysteine            1.3          5           1
 D aspartate           1.8          7           1
 E glutamate           3.6         14           1
 F phenylalanine       3.1         12           2
 G glycine            12.2         47           3
 H histidine           1.8          7           1
 I isoleucine          2.1          8           1
 K lysine              2.6         10           2
 L leucine            10.9         42           2
 M methionine          0.5          2           1
 N asparagine          2.8         11           1
 P proline            13.0         50           3
 Q glutamine           4.9         19           3
 R arginine           10.6         41           2
 S serine              8.3         32           2
 T threonine           2.8         11           1
 V valine              5.4         21           2
 W tryptophan          2.3          9           2
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291469          1.000   PREDICTED: hypothetical protein XP_002346693 
LOC338758             0.035   PREDICTED: hypothetical protein 
LOC338758             0.035   PREDICTED: hypothetical protein 
LOC338758             0.034   PREDICTED: hypothetical protein 
DACT3                 0.027   thymus expressed gene 3-like 
LOC100293375          0.023   PREDICTED: hypothetical protein 
CITED4                0.022   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
LOC100290946          0.022   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.022   PREDICTED: hypothetical protein XP_002344246 
FLJ37078              0.022   hypothetical protein LOC222183 
SRCAP                 0.019   Snf2-related CBP activator protein 
FLJ22184              0.019   PREDICTED: hypothetical protein LOC80164 
KDM6B                 0.019   lysine (K)-specific demethylase 6B 
SRRM1                 0.019   serine/arginine repetitive matrix 1 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
BAT2                  0.018   HLA-B associated transcript-2 
HCN4                  0.018   hyperpolarization activated cyclic nucleotide-gated p...
RANBP9                0.018   RAN binding protein 9 
LOC100131102          0.017   PREDICTED: hypothetical protein 
PAK4                  0.017   p21-activated kinase 4 isoform 1 
PAK4                  0.017   p21-activated kinase 4 isoform 1 
PAK4                  0.017   p21-activated kinase 4 isoform 1 
ZAR1                  0.017   zygote arrest 1 
LOC728046             0.017   PREDICTED: hypothetical protein 
CECR6                 0.015   cat eye syndrome chromosome region, candidate 6 isof...
DAAM2                 0.015   dishevelled associated activator of morphogenesis 2 ...
LOC100290372          0.015   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.015   PREDICTED: hypothetical protein XP_002342652 
SMR3A                 0.015   submaxillary gland androgen regulated protein 3 homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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