Guide to the Human Genome
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Name: LOC100292824 Sequence: fasta or formatted (309aa) NCBI GI: 239757101
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         37           2
 C cysteine            2.6          8           1
 D aspartate           1.6          5           1
 E glutamate           5.2         16           1
 F phenylalanine       1.3          4           1
 G glycine            11.3         35           2
 H histidine           2.9          9           1
 I isoleucine          1.9          6           1
 K lysine              2.6          8           1
 L leucine             5.2         16           2
 M methionine          1.9          6           1
 N asparagine          2.6          8           1
 P proline            13.9         43           2
 Q glutamine           2.6          8           1
 R arginine           12.6         39           4
 S serine              7.4         23           2
 T threonine           5.8         18           2
 V valine              3.6         11           1
 W tryptophan          1.6          5           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
COL3A1                0.025   collagen type III alpha 1 preproprotein 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.025   PREDICTED: hypothetical protein LOC80164 
ZNF219                0.025   zinc finger protein 219 
ZNF219                0.025   zinc finger protein 219 
ZNF219                0.025   zinc finger protein 219 
HCN2                  0.022   hyperpolarization activated cyclic nucleotide-gated...
CECR2                 0.022   cat eye syndrome chromosome region, candidate 2 [Ho...
SRRM2                 0.022   splicing coactivator subunit SRm300 
LOC100291624          0.021   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.021   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.021   PREDICTED: hypothetical protein XP_002342583 
LOC100293112          0.019   PREDICTED: hypothetical protein 
LOC100132891          0.019   PREDICTED: hypothetical protein 
LOC100288817          0.019   PREDICTED: hypothetical protein 
LOC100132891          0.019   PREDICTED: hypothetical protein 
LOC100288817          0.019   PREDICTED: hypothetical protein XP_002343307 
LOC100132891          0.019   PREDICTED: hypothetical protein 
MICALL1               0.019   molecule interacting with Rab13 
WDR33                 0.019   WD repeat domain 33 isoform 1 
LOC100287771          0.017   PREDICTED: hypothetical protein XP_002343133 
NACA                  0.017   nascent polypeptide-associated complex alpha subuni...
MYLK3                 0.016   myosin light chain kinase 3 
C10orf95              0.016   hypothetical protein LOC79946 
LOC100289763          0.016   PREDICTED: hypothetical protein XP_002347867 
LOC100287771          0.016   PREDICTED: hypothetical protein 
LOC100289681          0.016   PREDICTED: hypothetical protein XP_002343623 
PCLO                  0.016   piccolo isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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